View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_high_1 (Length: 830)
Name: NF18488_high_1
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 206 - 634
Target Start/End: Complemental strand, 19293749 - 19293322
Alignment:
| Q |
206 |
tgcaaaaattacattaaagattaggaatttggtgagaaatagaaaatttatttatttaaaacatgtaaacatttgctnnnnnnnncatgtaacgtaaaaa |
305 |
Q |
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| T |
19293749 |
tgcaaaaattacattaaagattatgaatttggtgaaaaatagaaaatttatttatttaaaacatgtaa-cgtttgctaaaaaaaacatgtaacgtaaaaa |
19293651 |
T |
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| Q |
306 |
tatctcaattgcaaagnnnnnnnnnnnnnnagtttaaatggaaaatatatatcatatataaatcaaagtgagaacttgattacttagataacatgatcaa |
405 |
Q |
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| T |
19293650 |
tatctcaattgcaaagagttatttttttttagtttgaatggaaaatatatattatatataaatcaaagtgagaactttattacctagataacatgatcaa |
19293551 |
T |
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| Q |
406 |
agtctaaacttttacgaagagtattagtctaaacttttacaaacttctagttacaataatactaaaacctcatgtcacttgatgaaagtctaagataact |
505 |
Q |
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| T |
19293550 |
agtctaaacttttacgaagagtattagtctaaacttttacaaacttctagttacaataatactaaaacttcatgtcacttaatgaaagtctaagataact |
19293451 |
T |
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| Q |
506 |
agaatacaaggactttgaatccttaactcttgaaatcacattgtgagaattaagaactttagtaaaactcatttcactgtagcatatctgaaattattgg |
605 |
Q |
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| T |
19293450 |
agaatacaagaactttgaatccttaactcttgaaatcacattgtgagaactgagaactttagtaaaactcatttcaccgtagcatatatgaaattattgg |
19293351 |
T |
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| Q |
606 |
ttgcatgagaattaattcagacacgtaca |
634 |
Q |
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| T |
19293350 |
ttgcatgagaattaattcagatacgtaca |
19293322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 682 - 817
Target Start/End: Complemental strand, 19293324 - 19293189
Alignment:
| Q |
682 |
acattaaatcagagaaatggttgggaaaacttattctaatcgtgcatgacattagatgaatgataagatcattttaagaattcatgaaaatccatttaag |
781 |
Q |
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| T |
19293324 |
acattaaatcagagaaatggttgagaaaacttattctaatcgtgcatgatattagatgaatgataagatcattataaaaattcatgaaaatccatttaag |
19293225 |
T |
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| Q |
782 |
ttcatttcaagtgattttcacatccatgagtataat |
817 |
Q |
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| T |
19293224 |
ttcttttcaagtgattttcacatccatgagtataat |
19293189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 19293917 - 19293781
Alignment:
| Q |
16 |
cagttacacctatcttaaaatgtcttccaattgtacatgtaaaaaattacatataattcttatggtgacgcccctcaaaatttaaatttatatttaatgg |
115 |
Q |
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| T |
19293917 |
cagttacacctatcttaaaatgtcttccaattgtacatgtgaaaaattacaaatgattcttacagtgacgcccctcaaaatttaaatttatatataatgg |
19293818 |
T |
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| Q |
116 |
ttgaggtcgtctatcacaagtcaaactagattgtgat |
152 |
Q |
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| T |
19293817 |
ttgaggtcgtctatcacaagtcaaactagattgtgat |
19293781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 19293782 - 19293749
Alignment:
| Q |
187 |
atcaccttttgctcatacatgcaaaaattacatt |
220 |
Q |
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| T |
19293782 |
atcaccttttgcccatacatgcaaaaattacatt |
19293749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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