View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_high_12 (Length: 286)
Name: NF18488_high_12
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 47193185 - 47192924
Alignment:
| Q |
9 |
acatcatcatggttcttattggttctaaacaaaaagaaccatacaaataaaattatggaaaactcaaacacccctatacctaatgctaaccaagtcaaga |
108 |
Q |
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| T |
47193185 |
acatcatcatggttcttattggttctaaacaaaaagaaccatacaaataaaattatggaaaactcaaacacccctatacctaatgctaaccaagtcaaga |
47193086 |
T |
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| Q |
109 |
aacttaatatggagtttttactcggtttttcgtagaatctattcaagggttgaaacaaagcaatggaacagttcaaaggtgaatgtttaaaaggaatggt |
208 |
Q |
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| T |
47193085 |
aacttaatatggagtttttacttggtttttcgtagaatctattcaagggttgaaacaaagcaatggaacagttcaaaggtgaatgtttaaaaggaatggt |
47192986 |
T |
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| Q |
209 |
ggaagataacaaagtatttttgggcaatttcaagtaaatatctccatcaatattgtgagaat |
270 |
Q |
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| T |
47192985 |
ggaagataacaaagtatttttgggcaatttcaagtaaatatctccatcaatattgtgagaat |
47192924 |
T |
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