View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_high_14 (Length: 240)
Name: NF18488_high_14
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 338702 - 338489
Alignment:
| Q |
14 |
attatactacgaaagataagattgtagttttannnnnnngaaaggaataagattgtagttataatagtttaaaatgaaggaataattgaaagataaaaag |
113 |
Q |
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| T |
338702 |
attatactacgaaagataagattgtagtttttttttt---aaaggaataagattgtagttataatagtttaaaatgaaggaataattgaaagataaaaag |
338606 |
T |
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| Q |
114 |
tcaactcaaaattatatgcata--------ccctttatatataagtatattgagctgcagttttacatgcttatccataagctcaccactgatacatctg |
205 |
Q |
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| T |
338605 |
tcaactcaaaattatatgcatagttgcataccctttatatataagtatattgagctgcagttttacatgcttatccataagctcaccactgatacgtctg |
338506 |
T |
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| Q |
206 |
catttcaacaatgttca |
222 |
Q |
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||||||||||||||||| |
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| T |
338505 |
catttcaacaatgttca |
338489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 37071417 - 37071466
Alignment:
| Q |
76 |
aatagtttaaaatgaaggaataattgaaagataaaaagtcaactcaaaat |
125 |
Q |
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||||||||||| | |||| |||||||||||||||| ||||||| |||||| |
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| T |
37071417 |
aatagtttaaattaaaggtataattgaaagataaacagtcaacccaaaat |
37071466 |
T |
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