View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18488_high_15 (Length: 227)

Name: NF18488_high_15
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18488_high_15
NF18488_high_15
[»] chr7 (11 HSPs)
chr7 (19-219)||(7328105-7328305)
chr7 (20-221)||(7311151-7311352)
chr7 (41-170)||(35205916-35206045)
chr7 (45-168)||(21210475-21210598)
chr7 (39-147)||(21218723-21218831)
chr7 (39-147)||(20414826-20414937)
chr7 (92-168)||(13888088-13888164)
chr7 (64-124)||(36260225-36260285)
chr7 (39-139)||(20456449-20456552)
chr7 (64-144)||(36263025-36263105)
chr7 (36-107)||(22473213-22473284)
[»] scaffold0064 (1 HSPs)
scaffold0064 (93-179)||(24206-24292)
[»] scaffold0128 (3 HSPs)
scaffold0128 (72-147)||(4117-4192)
scaffold0128 (36-107)||(25562-25633)
scaffold0128 (36-128)||(8513-8605)
[»] chr5 (1 HSPs)
chr5 (72-147)||(42298091-42298166)
[»] chr1 (1 HSPs)
chr1 (72-128)||(31443005-31443061)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 7328105 - 7328305
Alignment:
Q  19 gagtcgacacattcatcaaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328105 gagtcgacacattcatcaaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaat 7328204  T
Q  119 ttggagatgaccggtcttggactcaattctttacgtttagctatcacaatctgcgaatgaatttcgattcaagagttgtttactcgtggatgaaattaaa 218  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||| || | | |||||||  |||||||| |||||||||||||| ||||||||||    
T  7328205 ttggagatgacaggtcttggactaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaa 7328304  T
Q  219 g 219  Q
    |    
T  7328305 g 7328305  T

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Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 7311352 - 7311151
Alignment:
Q  20 agtcgacacattcatcaaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatt 119  Q
    |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||    
T  7311352 agtcgacacatttatcaagtgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatt 7311253  T
Q  120 tggagatgaccggtcttggactcaattctttacgtttagctatcacaatctgcgaatgaatttcgattcaagagttgtttactcgtggatgaaattaaag 219  Q
    |||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||| || |||||||||||    
T  7311252 tggagacgaccggtcttggactcagttatttacatttagctatcacaatcttcgaatgaatttaaattcaagagttgtttactcgaggttgaaattaaag 7311153  T
Q  220 cc 221  Q
    ||    
T  7311152 cc 7311151  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 35206045 - 35205916
Alignment:
Q  41 tttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtcttggac 140  Q
    |||||||| ||| ||||||||| || |||| ||||||||||||   ||| ||||||||||||||||||||||||||||||||| |||||  |||||||||    
T  35206045 tttgtgtgctgaggaactccttttgtttttatcatgatttcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggac 35205946  T
Q  141 tcaattctttacgtttagctatcacaatct 170  Q
    ||||||| |||  |||||||||||||||||    
T  35205945 tcaattccttaaatttagctatcacaatct 35205916  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 21210598 - 21210475
Alignment:
Q  45 tgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtcttggactcaa 144  Q
    |||||| | ||||| ||||||| ||| |||||||||||||  ||| |||||||||||||||||||||||| | ||||||||||||  ||||||||||| |    
T  21210598 tgtgtttaggaacttcttatgcctttatcatgatttcaacggaactgattttgttatatggaagatgacaaagtttggagatgacaagtcttggactcta 21210499  T
Q  145 ttctttacgtttagctatcacaat 168  Q
    ||| |||  |||||||||||||||    
T  21210498 ttccttaaatttagctatcacaat 21210475  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 21218831 - 21218723
Alignment:
Q  39 tgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtcttgg 138  Q
    |||||||||||||||||||||||| || |||| ||| ||||||||   ||| ||||| ||||||||| | ||||| ||||||||||||||   |||||||    
T  21218831 tgtttgtgtgttgatgaactccttttgtttttatcacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataagtcttgg 21218732  T
Q  139 actcaattc 147  Q
    |||||||||    
T  21218731 actcaattc 21218723  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 20414826 - 20414937
Alignment:
Q  39 tgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaa---aacagattttgttatatggaagatgacagaatttggagatgaccggtct 135  Q
    |||||||||||| ||||||||||| || |||| |||| || | | |||   ||| |||||| |||||||||||||||   ||||||||||||||  ||||    
T  20414826 tgtttgtgtgttcatgaactccttttgtttttatcataatatgatcaacggaaccgattttattatatggaagatgatgaaatttggagatgacaagtct 20414925  T
Q  136 tggactcaattc 147  Q
    ||||||||||||    
T  20414926 tggactcaattc 20414937  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 13888164 - 13888088
Alignment:
Q  92 attttgttatatggaagatgacagaatttggagatgaccggtcttggactcaattctttacgtttagctatcacaat 168  Q
    |||||||||||||||| |||||| |||||||||| ||   |||||||||||||||| |||  |||||||||| ||||    
T  13888164 attttgttatatggaaaatgacaaaatttggagacgaaaagtcttggactcaattccttaaatttagctatcgcaat 13888088  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 36260225 - 36260285
Alignment:
Q  64 tgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggag 124  Q
    ||||||||| |||||| ||| ||||| |||||||||||||||||||||  |||||||||||    
T  36260225 tgcttttctaatgattacaagaaaactgattttgttatatggaagatggaagaatttggag 36260285  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 20456449 - 20456552
Alignment:
Q  39 tgtttgtgtgttgatgaactccttatgcttttctcatgatt---tcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtct 135  Q
    |||||||||||||||||||||||| || |||| |||| |     |||||  |||  ||||||||||||||||||||||| ||||||| ||||||  ||||    
T  20456449 tgtttgtgtgttgatgaactccttttgtttttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtct 20456548  T
Q  136 tgga 139  Q
    ||||    
T  20456549 tgga 20456552  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 36263025 - 36263105
Alignment:
Q  64 tgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtcttggactcaa 144  Q
    ||||||||| |||| |  || ||||| |||||||||||||||||||||  ||||||||||| |||   |||||||||||||    
T  36263025 tgcttttctaatgactataagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggactcaa 36263105  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 22473284 - 22473213
Alignment:
Q  36 aaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaa 107  Q
    |||||||||||| |||||||||||| | ||  ||| ||||||||| ||  |||| |||||||||||||||||    
T  22473284 aaatgtttgtgtattgatgaactccctgtgtgtttatcatgatttaaaagaaactgattttgttatatggaa 22473213  T

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Target: scaffold0064 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 24206 - 24292
Alignment:
Q  93 ttttgttatatggaagatgacagaatttggagatgaccggtcttggactcaattctttacgtttagctatcacaatctgcgaatgaa 179  Q
    |||||||||||||||||||||||||| |||||||||   |||||| ||||||||| |||  |||||||||||| |||| | ||||||    
T  24206 ttttgttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaatttagctatcacgatcttcaaatgaa 24292  T

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Target: scaffold0128 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 4117 - 4192
Alignment:
Q  72 tcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtcttggactcaattc 147  Q
    |||||||||||| || || ||||| ||||||||||||||||||||||||||| ||||    |||||||||||||||    
T  4117 tcatgatttcaagaagaccgatttggttatatggaagatgacagaatttggaaatgaaaattcttggactcaattc 4192  T

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Target: scaffold0128; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 25562 - 25633
Alignment:
Q  36 aaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaa 107  Q
    ||||||||||||||||||||||||| ||||  ||| ||| ||||| ||  |||| |||||||||||||||||    
T  25562 aaatgtttgtgtgttgatgaactccctatgtgtttatcacgatttaaaggaaactgattttgttatatggaa 25633  T

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Target: scaffold0128; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 8513 - 8605
Alignment:
Q  36 aaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatga 128  Q
    ||||||||||||||| ||||||||| ||||  ||| ||| ||||| ||  |||| |||||||||||||||||  |||  ||||||||| ||||    
T  8513 aaatgtttgtgtgttaatgaactccctatgtgtttatcaagatttaaaggaaactgattttgttatatggaaattgatggaatttggaaatga 8605  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 42298091 - 42298166
Alignment:
Q  72 tcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgaccggtcttggactcaattc 147  Q
    |||| ||||||| || || ||||| |||||||||||||||| |||||||||||||||    |||||||||||||||    
T  42298091 tcataatttcaagaatactgatttagttatatggaagatgatagaatttggagatgaaaattcttggactcaattc 42298166  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 31443061 - 31443005
Alignment:
Q  72 tcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatga 128  Q
    ||||||||| ||  |||| ||||| |||||||||||||||||| |||||||||||||    
T  31443061 tcatgatttgaatgaaaccgatttcgttatatggaagatgacaaaatttggagatga 31443005  T

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