View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_high_16 (Length: 223)
Name: NF18488_high_16
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_16 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 145922 - 146025
Alignment:
| Q |
22 |
aagcaagggtaaatatgctaataattcataaaattaatcaaagatatacattagagctcaaatatgacccgaagtttagaaacaggctaaaacgctaaaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||| | ||||||| |
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| T |
145922 |
aagcaagggtaaatatgctaataattcataaaattaatcaaagaaacacattagagctcaaacttgacccgaagtttagaaacaagctaagaagctaaaa |
146021 |
T |
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| Q |
122 |
ttag |
125 |
Q |
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|||| |
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| T |
146022 |
ttag |
146025 |
T |
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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 9529178 - 9529299
Alignment:
| Q |
35 |
tatgctaataattcataaaattaatcaaagatatacattagagctcaaatatgacccgaagtttagaaacaggctaaaacgctaaaattaggagtaaaaa |
134 |
Q |
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||||| ||||||||||||||||||| ||| | |||||||||| |||||| |||| ||||||||||||| | ||| ||| | ||||| ||||| |||| |
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| T |
9529178 |
tatgcaaataattcataaaattaataaaaaaaatacattagaattcaaatgtgactcgaagtttagaaataagctgaaaagataaaactaggaccgaaaa |
9529277 |
T |
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| Q |
135 |
gctttcaaacttttaaattaca |
156 |
Q |
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| T |
9529278 |
gctttcaaaattttaaattaca |
9529299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 25035231 - 25035160
Alignment:
| Q |
42 |
ataattcataaaattaatcaaagatatacattagagctcaaatatgacccgaagtttagaaacaggctaaaa |
113 |
Q |
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|||||||||||||||||||||||| ||| |||| ||||||| || |||| ||||||||||||| ||||||| |
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| T |
25035231 |
ataattcataaaattaatcaaagaaatatattaaagctcaagaataacccaaagtttagaaacaagctaaaa |
25035160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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