View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_high_19 (Length: 203)
Name: NF18488_high_19
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_19 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 137701 - 137896
Alignment:
| Q |
1 |
gatttggtttcattaatgggaaaacaccagaagatagcaatggaaattgcagtggaagagttcaacaaccaatctagttcttccaagctgaatttgcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
137701 |
gatttggtttcattaatgggaaaacaccagaagatagcaatggaaattgcagtggaagagttcaacaaccaatctagttcttccaagctgaatttgcaga |
137800 |
T |
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| Q |
101 |
taaaagattcacatggaaattctgctcaagtaattgcaagtggtaatttatcttctatcnnnnnnnnncttgtgacaaacttctatcttcttctct |
196 |
Q |
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| T |
137801 |
taaaagattcacatggaaattctgctcaagtaattgcaagtggtaatttatcttctatctttttttttcttgtgacaaacttctatcttcttctct |
137896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 146161 - 146308
Alignment:
| Q |
1 |
gatttggtttcattaatgggaaaacaccagaagatagcaatggaaattgcagtggaagagttcaacaaccaatctag---ttcttccaagctgaatttgc |
97 |
Q |
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| T |
146161 |
gatttgggttcattaatgggaaagcaccagaagatagcaatagaaattgcagtgcatgagttcaataaccaaacgagttcttcttctaagctggatttgc |
146260 |
T |
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| Q |
98 |
agataaaagattcacatggaaattctgctcaagtaattgcaagtggta |
145 |
Q |
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| T |
146261 |
agataaaagactctcatggagattctgctcaagtaattgcaaatggta |
146308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 24908211 - 24908359
Alignment:
| Q |
1 |
gatttggtttcattaatgggaaaacaccagaagatagcaatggaaattgcagtggaagagttcaacaaccaatctagttcttccaagctgaatttgcaga |
100 |
Q |
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| T |
24908211 |
gatttggtttcattaatgggaaaacatcaaaagatagcaatggaaattgcagtcaaagagttcaacaaccaattgagttcgtccaagctggatttgcaga |
24908310 |
T |
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| Q |
101 |
taaaagattcacatggaaattctgctcaagtaattgcaagtggtaattt |
149 |
Q |
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| T |
24908311 |
taaaagattcacatggcaattctgcacaagttatttcaagtggtaattt |
24908359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 24985746 - 24985894
Alignment:
| Q |
1 |
gatttggtttcattaatgggaaaacaccagaagatagcaatggaaattgcagtggaagagttcaacaaccaatctagttcttccaagctgaatttgcaga |
100 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||| |
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| T |
24985746 |
gatttggtttcattaatgggaaaacatcaaaagatagcaatggaaattgcagtcaaagagttcaacaaccaattgagttcgtccaagctggatttgcaga |
24985845 |
T |
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| Q |
101 |
taaaagattcacatggaaattctgctcaagtaattgcaagtggtaattt |
149 |
Q |
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| T |
24985846 |
taaaagattcacatggcaattctgcacaagttatttcaagtggtaattt |
24985894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 24895979 - 24896126
Alignment:
| Q |
1 |
gatttggtttcattaatgggaaaacaccagaagatagcaatggaaattgcagtggaagagttcaacaaccaatctagttcttccaagctgaatttgcaga |
100 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||| ||||| | ||||||| ||||||| | |
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| T |
24895979 |
gatttggtttcattaatgggaaagcatcagaagatagcaatggaaatcgcagtcaaagagttcaacaaccacatgagttcgtgcaagctggatttgca-a |
24896077 |
T |
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| Q |
101 |
taaaagattcacatggaaattctgctcaagtaattgcaagtggtaattt |
149 |
Q |
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| T |
24896078 |
taaaaaattcacatggaaattctgctcaagttatttcaagtggtaattt |
24896126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 21828 - 21945
Alignment:
| Q |
36 |
agcaatggaaattgcagtggaag--agttcaacaaccaatctagttcttccaagctgaattt-gcagataaaagattcacatggaaattct-gctcaagt |
131 |
Q |
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|||||||||||||||||| || |||||||||||||| | || ||||||||| |||| ||||||||||||||||||||| |||||| || ||||| |
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| T |
21828 |
agcaatggaaattgcagttcaaagaagttcaacaaccaaattgagtcgtccaagctggatttcgcagataaaagattcacatggcaattctcgcacaagt |
21927 |
T |
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| Q |
132 |
aattgcaagtggtaattt |
149 |
Q |
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||| ||||||||||||| |
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| T |
21928 |
tatttcaagtggtaattt |
21945 |
T |
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