View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18488_high_4 (Length: 453)
Name: NF18488_high_4
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 31317086 - 31316655
Alignment:
| Q |
10 |
agaagaagccaccagagcaacaattatcccactc--agacgatagtggtttttcttctgacgaatatgagatgagagatattcagcacgacaacttggac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31317086 |
agaagaagccaccagagcaacaattatcccactctcagacgatagtggtttttcttctgacgaatatgagatgagagatattcagcacgacaacttggac |
31316987 |
T |
|
| Q |
108 |
gatgaggcctttggattccaaccgatgaacccaaaaaacattcaacattaaaaatcacatcctcaaatctctgaaggaaaaccaattataagggaagaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31316986 |
gatgaggcctttggattccaaccgatgaacccaaaaa-cattcaacattaaaaatcacatcctcaaatctctgaaggaaaaccaattatccgggaagaac |
31316888 |
T |
|
| Q |
208 |
tcaaaagattgcatagagcatctgacatattttttg--aaacttgaggcactgtatgtccacaaggagcattacaatccgacaaacatctttgattgctc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
31316887 |
tcaaaagattgcatagagcatctgacatatttttttttaaacttgaggcactatatgtccacaaggagcatcacaatccgacatacatctttgattgctc |
31316788 |
T |
|
| Q |
306 |
gtttactcattaagtggacaagcaaaagattggtcgaacgcgctttcaagtggcaccatttctactcaagaccaattggagagacaattccttgatggtt |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31316787 |
gtttactcattaagcggacaagcaaaagattggtcgaacgcgctttcaagtggcaccatttctactcaagaccaattggagagacaattccttgatggtt |
31316688 |
T |
|
| Q |
406 |
tctttcaacccacagagtatttggagaggaaac |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31316687 |
tctttcaacccacagagtatttggagaggaaac |
31316655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 13218323 - 13218254
Alignment:
| Q |
146 |
cattcaacattaaaaatcacatcctcaaatctctgaaggaaaaccaattataagggaagaactcaaaaga |
215 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||||| || ||||| | | ||| ||||||||||| |
|
|
| T |
13218323 |
cattcaacattaaaattcacgtcctcaaatttctgaaggacaatcaattctccgagaataactcaaaaga |
13218254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University