View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_high_5 (Length: 433)
Name: NF18488_high_5
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 96 - 411
Target Start/End: Complemental strand, 45520111 - 45519815
Alignment:
| Q |
96 |
ctaagaaaaatgaagaagaagatcatatatagctagcaaaggacggaagccaagtaatgttcatttgaaaactaatgatggagggggtgcagtttaaatc |
195 |
Q |
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| T |
45520111 |
ctaagaaaaatgaagaagaagatcatatatagctagcaaaggacggaagccaagtaatgttcatttgaaaacgaatgatggagggggtgcagtttaaatc |
45520012 |
T |
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| Q |
196 |
taatactatatagaagatcgatgataacgacaccaaatgtcatcaatactacttgttaacgtcttcacgattcaagagtagctcatttaaattataccaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
45520011 |
taatactatatagaagatcgatgataacgacaccaaatgtcatcaatactacttgttaacgtcttcacgattcaagaggagttcatttaaattatac--- |
45519915 |
T |
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| Q |
296 |
ctgatttgtacttgtagcatactaa-ttaataacgttaattcattaataccattaaactattcagttcctcaatttttattaagctcattgttttcatag |
394 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45519914 |
-----------------catactaatttaataacgttaattcattaataccattaaactattcagttcctcaatttttattaagctcattgttttcatag |
45519832 |
T |
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