View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_low_10 (Length: 367)
Name: NF18488_low_10
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 445179 - 444847
Alignment:
| Q |
15 |
aatatcttctaacattttttgaccctatgtcttttccacatagttggcaatgggcatgtttgactatctaaatcaagcaactctatgcattaactatgtt |
114 |
Q |
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| T |
445179 |
aatatcttcaaacattttttgaccctatgtcttttccacatagttggcaatgggcatgtttg-ctatctaaatctagcaactctatgcattaactatgtt |
445081 |
T |
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| Q |
115 |
gttaatatttatgaacagtaaaaaagatatctatgcttcttctattcaagttgctttatgtacaaaacatataagtaggcatgatcatgctattatcata |
214 |
Q |
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| T |
445080 |
gttaatatttatgaacagtaaaaaagatatctatgcttcttctattcaagttgctttatgtacaaaacatataagtaggcatgatcatgctattatcata |
444981 |
T |
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| Q |
215 |
tcagtgtgactatttttaaaacatgttgaggaaactatacttgttaaatatctttagaactaggatggaaggcacaagttgattctgcaatcaagatatc |
314 |
Q |
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| T |
444980 |
tcagtgtgactatttttaaaacatgttgaggaaactatacttgttaaatatctttagaattaggatggaaggcacaagttgattctgcaatcaagatatc |
444881 |
T |
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| Q |
315 |
catttcaattacaattgagaagtgatgaacattc |
348 |
Q |
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| T |
444880 |
catttcaattacaattgagaagtgatgaacattc |
444847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 27150264 - 27150215
Alignment:
| Q |
36 |
accctatgtcttttccacatagttggcaatgggcatgtttgactatctaa |
85 |
Q |
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| T |
27150264 |
accctatgtcttttccacatagttggcaattggcatgtttgaccatctaa |
27150215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 39367113 - 39367068
Alignment:
| Q |
40 |
tatgtcttttccacatagttggcaatgggcatgtttgactatctaa |
85 |
Q |
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| T |
39367113 |
tatgtcttttccacatagttggcaattggcatgtttgaccatctaa |
39367068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 12190766 - 12190806
Alignment:
| Q |
45 |
cttttccacatagttggcaatgggcatgtttgactatctaa |
85 |
Q |
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| T |
12190766 |
cttttccacatagttggcaattggcatttttgaccatctaa |
12190806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 24557694 - 24557660
Alignment:
| Q |
308 |
agatatccatttcaattacaattgagaagtgatga |
342 |
Q |
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| T |
24557694 |
agatatccatttcaattacaattgagaaatgatga |
24557660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 37744108 - 37744070
Alignment:
| Q |
40 |
tatgtcttttccacatagttggcaatgggcatgtttgac |
78 |
Q |
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| T |
37744108 |
tatgtgttttccacatagttggcaattggcatgtttgac |
37744070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 24558050 - 24558009
Alignment:
| Q |
44 |
tcttttccacatagttggcaatgggcatgtttgactatctaa |
85 |
Q |
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| T |
24558050 |
tcttttccacatagttggcaattagcatgtttgaccatctaa |
24558009 |
T |
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