View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_low_12 (Length: 295)
Name: NF18488_low_12
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 44344566 - 44344725
Alignment:
| Q |
1 |
catgtcgtcaatgacctatgttatgcacgtgttacattttagttccatttgattttatttgatttgatttggttagctacactgaaataaacaatttcca |
100 |
Q |
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| T |
44344566 |
catgtcgtcaatgacctatgttatgcacgtgttacattttagttccatttgattttatttgatttgagttggttagctacactgaaataaacaatttcta |
44344665 |
T |
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| Q |
101 |
tgtagattaactttttataacggatcttgctaacaaatacatttaggacagtagttaagg |
160 |
Q |
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| T |
44344666 |
tgtagattagctttttataatgggtctagctaacaaatgcacttaggacagtagttaagg |
44344725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 44344792 - 44344840
Alignment:
| Q |
227 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaa |
275 |
Q |
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|||||||||||||| | ||||||||||| ||||||||| |||||||||| |
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| T |
44344792 |
tgaatacacaacttccgaaataaatgtttaactttaaacttcttatcaa |
44344840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 31752759 - 31752807
Alignment:
| Q |
227 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaa |
275 |
Q |
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| T |
31752759 |
tgaatacacaacttccaaaataaaccttttactttaaatttcttatcaa |
31752807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 46299495 - 46299447
Alignment:
| Q |
227 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaa |
275 |
Q |
| |
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|||||||| || ||||||||||||| || |||||||||||||||||||| |
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| T |
46299495 |
tgaatacataaatttcaaaataaatttttaactttaaatttcttatcaa |
46299447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 44529297 - 44529241
Alignment:
| Q |
227 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaaatgcccta |
283 |
Q |
| |
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||||||||||||||| || ||||| ||| |||||||| ||||||||||||| |||| |
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| T |
44529297 |
tgaatacacaacttttaagataaaacttccactttaaacttcttatcaaatgtccta |
44529241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 9050027 - 9049971
Alignment:
| Q |
227 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaaatgcccta |
283 |
Q |
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|||||||||||||||||||||||| ||| | |||||| || ||||||| ||||||| |
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| T |
9050027 |
tgaatacacaactttcaaaataaactttctattttaaactttttatcaagtgcccta |
9049971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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