View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18488_low_14 (Length: 258)

Name: NF18488_low_14
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18488_low_14
NF18488_low_14
[»] chr2 (3 HSPs)
chr2 (42-240)||(40122598-40122795)
chr2 (1-44)||(39676226-39676269)
chr2 (1-49)||(5077085-5077132)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-43)||(67913-67955)
[»] chr5 (5 HSPs)
chr5 (1-42)||(7529670-7529711)
chr5 (1-42)||(35468115-35468156)
chr5 (2-48)||(27878589-27878635)
chr5 (1-42)||(11447326-11447367)
chr5 (3-44)||(38503509-38503550)
[»] chr8 (3 HSPs)
chr8 (1-42)||(26748052-26748093)
chr8 (1-38)||(27631495-27631532)
chr8 (1-44)||(2116610-2116653)
[»] chr3 (10 HSPs)
chr3 (1-42)||(43747696-43747737)
chr3 (1-46)||(36040320-36040365)
chr3 (1-44)||(27516325-27516368)
chr3 (1-44)||(50001961-50002004)
chr3 (1-44)||(52796838-52796881)
chr3 (2-44)||(39197962-39198004)
chr3 (1-42)||(29109235-29109276)
chr3 (2-42)||(1509354-1509394)
chr3 (3-47)||(4987016-4987060)
chr3 (1-41)||(38888497-38888537)
[»] scaffold0380 (1 HSPs)
scaffold0380 (1-47)||(40-86)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-39)||(28086-28124)
[»] chr4 (6 HSPs)
chr4 (1-38)||(6447016-6447053)
chr4 (1-42)||(49233383-49233424)
chr4 (1-36)||(45781970-45782005)
chr4 (4-42)||(8718616-8718654)
chr4 (3-44)||(8281592-8281633)
chr4 (1-30)||(53922052-53922081)
[»] chr1 (7 HSPs)
chr1 (1-42)||(30724587-30724628)
chr1 (1-42)||(2167805-2167846)
chr1 (1-42)||(4795858-4795899)
chr1 (1-42)||(8170326-8170367)
chr1 (1-46)||(10617335-10617380)
chr1 (1-42)||(25658913-25658954)
chr1 (1-41)||(45707960-45708000)
[»] chr6 (2 HSPs)
chr6 (2-46)||(3711422-3711466)
chr6 (1-44)||(251795-251838)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-44)||(46510-46553)
[»] chr7 (4 HSPs)
chr7 (1-46)||(20383935-20383980)
chr7 (1-46)||(37031199-37031244)
chr7 (1-42)||(45657788-45657829)
chr7 (1-42)||(48402504-48402545)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 40122598 - 40122795
Alignment:
Q  42 taagtgtttgggacacacccaattatatctacacatgactactcaatcatccgagactaaaatgacataaannnnnnngtcataaacttggtttcctctc 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  40122598 taagtgtttgggacacacccaattatatctacacatgactactcaatcatccgagactaaaatgacataaatttttta-tcataaacttggtttcctctc 40122696  T
Q  142 tcttttcaaaatgattgattatggtcgttgcaaaccttaattcacaaaaataaaggtcgaggaaaataactaaagaaacaaggatgatgttaaatgtta 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40122697 tcttttcaaaatcattgattatggtcgttgcaaaccttaattcacaaaaataaaggtcgaggaaaataactaaagaaacaaggatgatgttaaatgtta 40122795  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39676269 - 39676226
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  39676269 atttctctctttccaacttctcttctgaaccaaacacaccctaa 39676226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5077132 - 5077085
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaagtgtt 49  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  5077132 atttctctctttccaacttctc-tccaaaccaaacacaccctaaatgtt 5077085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 67913 - 67955
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacacccta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  67913 atttctctctttccaacttctcttccgaaccaaacacacccta 67955  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7529711 - 7529670
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7529711 atttctctctttccaacttctcttccgaaccaaacacaccct 7529670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35468115 - 35468156
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  35468115 atttctctctttccaacttctcttccgaaccaaacagaccct 35468156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 27878635 - 27878589
Alignment:
Q  2 tttctctctttccaacttctcttccgaaccaaacacaccctaagtgt 48  Q
    ||||||||||  ||| ||||||||| |||||||||||||||||||||    
T  27878635 tttctctcttcacaatttctcttccaaaccaaacacaccctaagtgt 27878589  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11447326 - 11447367
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  11447326 atttctctcttcacaacttctcttccaaaccaaacacaccct 11447367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 38503550 - 38503509
Alignment:
Q  3 ttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  38503550 ttctctcttctcaacttctcttccaaaccaaacacaccctaa 38503509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26748052 - 26748093
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  26748052 atttctctcttttcaacttctcttccgaaccaaacacaccct 26748093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27631532 - 27631495
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacaca 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27631532 atttctctttttccaacttctcttccgaaccaaacaca 27631495  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2116610 - 2116653
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  2116610 atttctctcttcacaacttctcttccaaaccaaacacaccctaa 2116653  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43747737 - 43747696
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  43747737 atttctctctttccagcttctcttccgaaccaaacacaccct 43747696  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36040365 - 36040320
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaagt 46  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||    
T  36040365 atttctctcttcacaacttctcttcctaaccaaacacaccctaagt 36040320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27516325 - 27516368
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  27516325 atttctctcttctcaacttctcttccaaaccaaacacaccctaa 27516368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50001961 - 50002004
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||    
T  50001961 atttctctctttacaacttctcttccaaaccaaacataccctaa 50002004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52796838 - 52796881
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  52796838 atttctctcttcacaacttctcttccaaaccaaacacaccctaa 52796881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 39197962 - 39198004
Alignment:
Q  2 tttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    ||||||||||| ||||||||||||  |||||||||||||||||    
T  39197962 tttctctctttacaacttctcttctaaaccaaacacaccctaa 39198004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29109276 - 29109235
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  29109276 atttctctcttcacaacttctcttccaaaccaaacacaccct 29109235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 1509354 - 1509394
Alignment:
Q  2 tttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    ||||||||||| ||||||||||||| ||||||||| |||||    
T  1509354 tttctctctttacaacttctcttcccaaccaaacaaaccct 1509394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 4987016 - 4987060
Alignment:
Q  3 ttctctctttccaacttctcttccgaaccaaacacaccctaagtg 47  Q
    |||||||||  ||||||||||||| ||||||||||||||| ||||    
T  4987016 ttctctcttctcaacttctcttccaaaccaaacacacccttagtg 4987060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38888497 - 38888537
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccc 41  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  38888497 atttctctcttttcaatttctcttctgaaccaaacacaccc 38888537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 86 - 40
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaagtg 47  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||    
T  86 atttctctcttcacaacttctcttccaaaccaaacacaccctaagtg 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28086 - 28124
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacac 39  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  28086 atttctctcttttcaacttctcttccgaaccaaacacac 28124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6447053 - 6447016
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacaca 38  Q
    |||||||||||| |||||||||||||||||||||||||    
T  6447053 atttctctcttttcaacttctcttccgaaccaaacaca 6447016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49233383 - 49233424
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  49233383 atttctctttttctaacttctcttccgaaccaaacacaccct 49233424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45781970 - 45782005
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaaca 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  45781970 atttctctctttccaacttctcttccaaaccaaaca 45782005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 8718654 - 8718616
Alignment:
Q  4 tctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  8718654 tctctcttcacaacttctcttccgaaccaaacacaccct 8718616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 8281592 - 8281633
Alignment:
Q  3 ttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  8281592 ttctctttttccaacttctctttcaaaccaaacacaccctaa 8281633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 53922052 - 53922081
Alignment:
Q  1 atttctctctttccaacttctcttccgaac 30  Q
    ||||||||||||||||||||||||||||||    
T  53922052 atttctctctttccaacttctcttccgaac 53922081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30724628 - 30724587
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  30724628 atttctctctttacaacttctcttccaaaccaaacacaccct 30724587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2167805 - 2167846
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  2167805 atttctctcttcacaacttctcttccaaaccaaacacaccct 2167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4795899 - 4795858
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||||||||||||||| | ||||||||| |||||    
T  4795899 atttctctctttccaacttctctttcaaaccaaacagaccct 4795858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8170367 - 8170326
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||| ||||||||||||||||||||| ||||||||| |||||    
T  8170367 atttttctctttccaacttctcttccaaaccaaacagaccct 8170326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10617335 - 10617380
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaagt 46  Q
    |||||||||||  |||||||||||||  ||||||||||||||||||    
T  10617335 atttctctcttcacaacttctcttccataccaaacacaccctaagt 10617380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25658954 - 25658913
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||| ||| |||||||| ||||||||||||||||    
T  25658954 atttctctcttttcaatttctcttcggaaccaaacacaccct 25658913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45708000 - 45707960
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccc 41  Q
    |||||||||||  ||||||||||||| ||||||||||||||    
T  45708000 atttctctcttcacaacttctcttccaaaccaaacacaccc 45707960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 3711466 - 3711422
Alignment:
Q  2 tttctctctttccaacttctcttccgaaccaaacacaccctaagt 46  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||    
T  3711466 tttctctcttcacaacttctcttccaaaccaaacacaccctaagt 3711422  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 251838 - 251795
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  251838 atttctctcttcacaacttctcttccaaaccaaacacaccctaa 251795  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46553 - 46510
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaa 44  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  46553 atttctctcttcacaacttctcttccaaaccaaacacaccctaa 46510  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20383935 - 20383980
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaagt 46  Q
    |||||||||||  ||||||||||||  |||||||||||||||||||    
T  20383935 atttctctcttcacaacttctcttctaaaccaaacacaccctaagt 20383980  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37031244 - 37031199
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccctaagt 46  Q
    |||||||||||| ||||||||||||   ||||||||||||||||||    
T  37031244 atttctctctttacaacttctcttctacaccaaacacaccctaagt 37031199  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45657788 - 45657829
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  45657788 atttctctcttcacaacttctcttccaaaccaaacacaccct 45657829  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48402545 - 48402504
Alignment:
Q  1 atttctctctttccaacttctcttccgaaccaaacacaccct 42  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  48402545 atttctctcttcacaacttctcttcctaaccaaacacaccct 48402504  T

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