View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18488_low_19 (Length: 220)
Name: NF18488_low_19
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_low_19 |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21404025 - 21404227
Alignment:
| Q |
1 |
taacacagcaaaaccttgtggcgcgtcgggatcaagaccaacattgaaagggcacgagtttctggtgactaaagtgagacttcctccattgccggtgata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21404025 |
taacacagcaaaaccttgtggcgcgtcgggatcaagaccaacattgaaagggcacgagtttctggtgactaaagtgagacttcctccgttgccggtgata |
21404124 |
T |
|
| Q |
101 |
gcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgttaccaccaaaagccacacat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21404125 |
gcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgttaccaccaaaagccacacat |
21404224 |
T |
|
| Q |
201 |
tag |
203 |
Q |
| |
|
||| |
|
|
| T |
21404225 |
tag |
21404227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21798517 - 21798719
Alignment:
| Q |
1 |
taacacagcaaaaccttgtggcgcgtcgggatcaagaccaacattgaaagggcacgagtttctggtgactaaagtgagacttcctccattgccggtgata |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21798517 |
taacacagcaaaaccttgtggcgcgtcgggatcaagaccaacattgaaagggcacgagtttctggtgactaaagtgagacttcctccgttgccggtgata |
21798616 |
T |
|
| Q |
101 |
gcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgttaccaccaaaagccacacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21798617 |
gcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgttaccaccaaaagccacacat |
21798716 |
T |
|
| Q |
201 |
tag |
203 |
Q |
| |
|
||| |
|
|
| T |
21798717 |
tag |
21798719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 21370872 - 21370993
Alignment:
| Q |
82 |
tcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgtt |
181 |
Q |
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|||||||||||| ||||||||||| ||||||||||| ||||| || | |||||| ||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
21370872 |
tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaactgagctattgatgtcgtt |
21370971 |
T |
|
| Q |
182 |
accaccaaaagccacacattag |
203 |
Q |
| |
|
|| |||||| |||||||||| |
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|
| T |
21370972 |
gtcatcaaaagacacacattag |
21370993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 33889 - 33754
Alignment:
| Q |
65 |
gtgactaaagtgagacttcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaact |
164 |
Q |
| |
|
||||| |||||| || |||||| ||||| |||||||||||||| |||||||| |||||||| | |||||||||||| || ||||||||||||||||||| |
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| T |
33889 |
gtgaccaaagtggaacctcctccgttgcctgtgatagcaggtctaatgaagtattcctcatcgtcctcaacaggttcgccacttgtgtcgatgacaaact |
33790 |
T |
|
| Q |
165 |
gagctattgatgttgttaccaccaaaagccacacat |
200 |
Q |
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|
||||||||||||||||| ||| ||||||||| |||| |
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| T |
33789 |
gagctattgatgttgttgccatcaaaagccaaacat |
33754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 26224 - 26353
Alignment:
| Q |
71 |
aaagtgagacttcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagcta |
170 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| ||||||||||| ||||| || | |||||| ||||| || |||||||||||||||||||| |||| |
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| T |
26224 |
aaagtgaaacctcctccattgcctgtgatagcaggcctgatgaagtattcctcgtcgtcctcaacgggttcgccacttgtgtcgatgacaaactgggcta |
26323 |
T |
|
| Q |
171 |
ttgatgttgttaccaccaaaagccacacat |
200 |
Q |
| |
|
||||| ||||| ||| |||||||||||||| |
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| T |
26324 |
ttgattttgttgccatcaaaagccacacat |
26353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 15207 - 15348
Alignment:
| Q |
59 |
tttctggtgactaaagtgagacttcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatga |
158 |
Q |
| |
|
|||| |||||| |||||| || |||||||||||| ||||||||| ||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |
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|
| T |
15207 |
tttccggtgaccaaagtggaacctcctccattgcctccgatagcaggcctgatgaagtattcctcatcgtcctcaacgggttcaccacttgtgtcgatga |
15306 |
T |
|
| Q |
159 |
caaactgagctattgatgttgttaccaccaaaagccacacat |
200 |
Q |
| |
|
|||| || | |||||||||| || ||| |||||||||||||| |
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| T |
15307 |
caaattgcgatattgatgtttttgccatcaaaagccacacat |
15348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 17093 - 16964
Alignment:
| Q |
71 |
aaagtgagacttcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagcta |
170 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| || |||||||| ||||| || | |||||| ||||| || |||||||||||||||||||| |||| |
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|
| T |
17093 |
aaagtgaaacctcctccattgcctgtgatagcaggcctaatgaagtattcctcgtcgtcctcaacgggttcgccacttgtgtcgatgacaaactgggcta |
16994 |
T |
|
| Q |
171 |
ttgatgttgttaccaccaaaagccacacat |
200 |
Q |
| |
|
|||| ||||| ||| |||||||||||||| |
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| T |
16993 |
atgattttgttgccatcaaaagccacacat |
16964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 4286638 - 4286517
Alignment:
| Q |
59 |
tttctggtgactaaagtgagacttcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatga |
158 |
Q |
| |
|
||||||||||| ||| || || |||||||||||| ||||||||||| ||||||||||| |||||||| | |||||| ||||| || |||||||| |||| |
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|
| T |
4286638 |
tttctggtgaccaaaatggaacctcctccattgcctgtgatagcaggcctgatgaagtattcctcatcgtcctcaacgggttcgccacttgtgtctatga |
4286539 |
T |
|
| Q |
159 |
caaactgagctattgatgttgt |
180 |
Q |
| |
|
||| || |||| ||||||||| |
|
|
| T |
4286538 |
caatttgtgctactgatgttgt |
4286517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 4295109 - 4294988
Alignment:
| Q |
59 |
tttctggtgactaaagtgagacttcctccattgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatga |
158 |
Q |
| |
|
||||||||||| ||| || || ||||||||| || |||||||| || ||||||||||| |||||||| | |||||| ||||| || |||||||| |||| |
|
|
| T |
4295109 |
tttctggtgaccaaaatggaacctcctccattacctgtgatagcgggcctgatgaagtattcctcatcgtcctcaacgggttcgccacttgtgtctatga |
4295010 |
T |
|
| Q |
159 |
caaactgagctattgatgttgt |
180 |
Q |
| |
|
||| || |||| ||||||||| |
|
|
| T |
4295009 |
caatttgtgctactgatgttgt |
4294988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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