View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18488_low_3 (Length: 478)
Name: NF18488_low_3
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_low_3 |
 | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0302 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 21404040 - 21403566
Alignment:
| Q |
1 |
aggttttgctgtgttattatctccttttgtttccaatcgtgaggaggacgaggtaaggcttggcagagacttaagagtgatattccaagcaggcacgagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404040 |
aggttttgctgtgttattatctccttttgtttccaaccgtgaggaggacgaggtgaggcttggcagagacttaagagtgatattccaagcaggcacgagc |
21403941 |
T |
|
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21403940 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21403841 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21403840 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
21403741 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaataatctgaaggatggtgaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21403740 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaataatctgaaggatggtgaagt |
21403641 |
T |
|
| Q |
401 |
ttacttttagtggtgtacgattatgcactcttgttgttttcttgtttactcaataaatatggagtcatcgttcat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21403640 |
ttacttttagtggtgtacgattatgcactcttgttgttttcttgtttactcaataaatatggagtcatcgttcat |
21403566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 21798532 - 21798058
Alignment:
| Q |
1 |
aggttttgctgtgttattatctccttttgtttccaatcgtgaggaggacgaggtaaggcttggcagagacttaagagtgatattccaagcaggcacgagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798532 |
aggttttgctgtgttattatctccttttgtttccaaccgtgaggaggacgaggtgaggcttggcagagacttaagagtgatattccaagcaggcacgagc |
21798433 |
T |
|
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798432 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21798333 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798332 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
21798233 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaataatctgaaggatggtgaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798232 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaataatctgaaggatggtgaagt |
21798133 |
T |
|
| Q |
401 |
ttacttttagtggtgtacgattatgcactcttgttgttttcttgtttactcaataaatatggagtcatcgttcat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798132 |
ttacttttagtggtgtacgattatgcactcttgttgttttcttgtttactcaataaatatggagtcatcgttcat |
21798058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 2 - 416
Target Start/End: Complemental strand, 21370799 - 21370385
Alignment:
| Q |
2 |
ggttttgctgtgttattatctccttttgtttccaatcgtgaggaggacgaggtaaggcttggcagagacttaagagtgatattccaagcaggcacgagct |
101 |
Q |
| |
|
||||| ||| || |||| |||||||||| | || ||| || || |||||||| |||||| ||||||||||| ||||||||||||||| |||| | |
|
|
| T |
21370799 |
ggtttggctctggtattctctccttttgctccccatcacgatgacgacgaggtgaggcttaacagagacttaaaagtgatattccaagcttccacggctt |
21370700 |
T |
|
| Q |
102 |
gtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatgg |
201 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |||||||| || ||| |||||| ||||||||| | ||||||||||||| | ||| |
|
|
| T |
21370699 |
gtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgttatcattggaagagatagtggtacagttggatcctttgg |
21370600 |
T |
|
| Q |
202 |
taacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggact |
301 |
Q |
| |
|
||||||||||| |||||| ||||| || |||| ||||| |||||| |||||||| |||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
21370599 |
taacttctttaagattgtagaaactgcagttagaaatatctataacattcaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggact |
21370500 |
T |
|
| Q |
302 |
gttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaataatctgaaggatggtgaagtt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||| ||| |||||| |||||||||||||||||||| |||| || |
|
|
| T |
21370499 |
gttggtattgttcgtgagaatggtaagattttgttggctcttgatggcactccccttcccattgtgttccagaaagaataatctgaaggatgatgaactt |
21370400 |
T |
|
| Q |
402 |
tacttttagtggtgt |
416 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
21370399 |
taattttaatggtgt |
21370385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 336
Target Start/End: Complemental strand, 21934593 - 21934358
Alignment:
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
|||| ||| |||||||||||||| || ||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
|
|
| T |
21934593 |
tgtgtacaatcaacagaatggagattaggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
21934494 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
||||||||||||||||||| | || ||| | |||||| | ||| || |||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
21934493 |
gtaacttctttaggattgtagagaccccacttgaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaac |
21934394 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaagattctgtt |
336 |
Q |
| |
|
||||| ||| | |||||||||||||||| |||| |
|
|
| T |
21934393 |
tgttgatatgttgaatgagaatggtaagattttgtt |
21934358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 4286793 - 4287069
Alignment:
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| ||||||||||| |||||| ||| | ||| | |||||||||||| || || ||| ||||| ||| |
|
|
| T |
4286793 |
tgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttaccggaagagataatggtgcag---gatcacatg |
4286889 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
||||||| |||||||||||||| || | |||| | ||||||| |||||| |||||||| |||||||||| ||| || ||||||||| || |||||||||| |
|
|
| T |
4286890 |
gtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatggtgccctacagaggcgtgccctagttgtaaggttcaatgtgggac |
4286989 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaat |
380 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||| || |||||||| |||||||||| |||| |||||| ||||||| |
|
|
| T |
4286990 |
tgttggtgttattcgtgagaatggcaagattctgttggcccttgatggtggtgcccttccagttgtgttccagaaagaat |
4287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 4295264 - 4295540
Alignment:
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| ||||||||||| |||||| ||| | ||| | |||||||||||| || || ||| ||||| ||| |
|
|
| T |
4295264 |
tgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttaccggaagagataatggtgcag---gatcacatg |
4295360 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
||||||| |||||||||||||| || | |||| | ||||||| |||||| |||||||| |||||||||| ||| || ||||||||| || |||||||||| |
|
|
| T |
4295361 |
gtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatggtgccctacagaggcgtgccctagttgtaaggttcaatgtgggac |
4295460 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaat |
380 |
Q |
| |
|
||||||| || ||||||||||||| |||||||| || || |||||||| |||||||||| || | |||||| ||||||| |
|
|
| T |
4295461 |
tgttggtgttattcgtgagaatggcaagattcttttggcgcttgatggtggtgcccttcctgtcgtgttccagaaagaat |
4295540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 101 - 329
Target Start/End: Original strand, 44442840 - 44443068
Alignment:
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
||||| |||||| |||||||||| || || |||||||||||||||| ||| || ||| | |||| |||||||||||||||| ||||||||||||||| || |
|
|
| T |
44442840 |
tgtgggcagtcatcagaatggagattaggcgagagggacgcaacgagtggtaggaggcttattaccaccggaagagatgatggtacagttggatcatttg |
44442939 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
|||||||||||||||||||||| | | |||| ||||||| ||||||||||||||| |||| ||| ||||| || || ||| ||||||||||||||| |
|
|
| T |
44442940 |
gtaacttctttaggattgtgcagagccaaactcttggtatctataacatccaatggtgccctagagaagtgtgccctagctgttggtttgaatgtgggac |
44443039 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaaga |
329 |
Q |
| |
|
| |||||||| ||||||||||||| |||| |
|
|
| T |
44443040 |
tattggtattattcgtgagaatggcaaga |
44443068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 34044 - 34320
Alignment:
| Q |
101 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
200 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| |||| || ||||||| |||||| ||||| ||| | |||||||||||| | || ||| ||||| | | |
|
|
| T |
34044 |
tgtgggcagtcaacagactggagattgggcgagaaagatgcaacgagtggaaggaggttgattgttaccggaagagataacggtgcag---gatcacaag |
34140 |
T |
|
| Q |
201 |
gtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| |||| | |||| || |||||| || ||||| |||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
34141 |
gtaacttttttaggattgtgcagactcaaactggtggtacctataacattcagtggtgccctacagaggcttgtccaagttgtaaggtacaatgtgggac |
34240 |
T |
|
| Q |
301 |
tgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaat |
380 |
Q |
| |
|
||||||| || |||| |||||||| |||| |||||| || |||||||| ||||||||| |||| |||||| ||||||| |
|
|
| T |
34241 |
tgttggtgttattcgcgagaatggcaagaatctgttggcccttgatggtgatgcccttccagttgtgttccagaaagaat |
34320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 25976 - 25796
Alignment:
| Q |
200 |
ggtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtggga |
299 |
Q |
| |
|
|||||||| |||||||||||||| || | |||| |||||| || |||||| ||||||||||||| ||||||||| || |||||||| || ||||||||| |
|
|
| T |
25976 |
ggtaacttttttaggattgtgcagacccaaactggaggtaactataacattcaatggtgtcctaaagaggtgtgccctagttgtaatattcaatgtggga |
25877 |
T |
|
| Q |
300 |
ctgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaat |
380 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| |||| || || || || |||||||||| || | |||||| ||||||| |
|
|
| T |
25876 |
ctgttggtgttattcgtgagaatggcaagattttgttggccctcgacggtggtgcccttccagtcgtgttccagaaagaat |
25796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 380
Target Start/End: Original strand, 17353 - 17533
Alignment:
| Q |
200 |
ggtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtggga |
299 |
Q |
| |
|
|||||||| |||||||||||||| || | |||||| || | || |||||| |||||||| |||| ||||||||| || |||||||| || ||||||||| |
|
|
| T |
17353 |
ggtaacttttttaggattgtgcagacccaaactagtggcaactataacattcaatggtgccctaaagaggtgtgccctagttgtaatattcaatgtggga |
17452 |
T |
|
| Q |
300 |
ctgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaat |
380 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| |||| || || ||||| |||||||||| || | |||||| ||||||| |
|
|
| T |
17453 |
ctgttggtgttattcgtgagaatggcaagattttgttggccctcgatggtcgtgcccttccagtcgtgttccagaaagaat |
17533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 14959 - 14779
Alignment:
| Q |
200 |
ggtaacttctttaggattgtgcaaactccaactagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtggga |
299 |
Q |
| |
|
|||||||| |||||||||||||| || | |||||| || | || |||||| |||||||| |||||||||||||| || | ||||||| | ||||||| | |
|
|
| T |
14959 |
ggtaacttttttaggattgtgcagacccaaactagtggcaactataacattcaatggtgccctacagaggtgtgccctaattgtaagaatcaatgtggaa |
14860 |
T |
|
| Q |
300 |
ctgttggtattgttcgtgagaatggtaagattctgttagctcttgatggcagtgcccttcccgttgcgttccaaaaagaat |
380 |
Q |
| |
|
|||||||| || |||| |||||||| |||||| |||| || || ||||| |||||||||| || | |||||| ||||||| |
|
|
| T |
14859 |
ctgttggtcttattcgcgagaatggaaagattttgttggccctcgatggtggtgcccttccagtcgtgttccagaaagaat |
14779 |
T |
|
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