View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18488_low_6 (Length: 421)
Name: NF18488_low_6
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18488_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 41757255 - 41757666
Alignment:
| Q |
1 |
ttgctgcttatatttaatttacatgggacagagatatcaaagtcatttccaaacttgtacaaaaattaaatcctagctcattgcaataagaacacatcag |
100 |
Q |
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||||||||| | |||||||| || ||| |||||| |||||||||| ||||||||||||||||||||| ||||| ||| | ||||||| ||||||||||| |
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| T |
41757255 |
ttgctgcttctctttaatttccaggggccagagacatcaaagtcagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcag |
41757354 |
T |
|
| Q |
101 |
agggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757355 |
agggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatc |
41757454 |
T |
|
| Q |
201 |
agttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757455 |
agttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtac |
41757554 |
T |
|
| Q |
301 |
cttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757555 |
cttccaaagggtgtgtcttactatgatatgttaagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaa |
41757654 |
T |
|
| Q |
401 |
tatacacaggtt |
412 |
Q |
| |
|
|||||||||||| |
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|
| T |
41757655 |
tatacacaggtt |
41757666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 91 - 412
Target Start/End: Original strand, 41765428 - 41765749
Alignment:
| Q |
91 |
aacacatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccat |
190 |
Q |
| |
|
||||| ||||||||||||||||| | ||| ||||||||||||||||||| |||| ||| |||||| | ||| ||| | || ||||||| |||||||||| |
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|
| T |
41765428 |
aacacctcagagggattcaagccagtaaaagatgtatctattccagaaatcaatgttcgaaccggcataattgatgatcttcttggcggaccatcaccat |
41765527 |
T |
|
| Q |
191 |
ctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagt |
290 |
Q |
| |
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||||| ||||| |||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41765528 |
ctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagt |
41765627 |
T |
|
| Q |
291 |
tcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtg |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41765628 |
tcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagcaagttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtg |
41765727 |
T |
|
| Q |
391 |
gtggaagcaatatacacaggtt |
412 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
41765728 |
gtggaagcaatatacacaggtt |
41765749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
290 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
386 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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|
| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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