View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18488_low_7 (Length: 407)

Name: NF18488_low_7
Description: NF18488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18488_low_7
NF18488_low_7
[»] chr1 (2 HSPs)
chr1 (267-389)||(26033006-26033128)
chr1 (168-228)||(48469400-48469460)
[»] chr5 (1 HSPs)
chr5 (117-228)||(25954320-25954434)
[»] chr4 (2 HSPs)
chr4 (124-230)||(19023347-19023459)
chr4 (167-227)||(33717964-33718024)
[»] chr8 (1 HSPs)
chr8 (128-216)||(11863366-11863458)
[»] chr3 (1 HSPs)
chr3 (124-228)||(3731217-3731325)
[»] chr2 (3 HSPs)
chr2 (124-228)||(28492119-28492226)
chr2 (124-228)||(43377649-43377755)
chr2 (168-228)||(10110850-10110910)
[»] chr7 (2 HSPs)
chr7 (167-228)||(11471207-11471268)
chr7 (168-228)||(49077150-49077210)
[»] scaffold0385 (1 HSPs)
scaffold0385 (168-228)||(12824-12884)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 26033006 - 26033128
Alignment:
Q  267 tcttaatcacccggtaaacaactatagaatcaacatgcaattcaattgctatgaaactcaatcttatggtatacatcaattgctatgaaactcaatctcc 366  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26033006 tcttaatcacccggtaaacaactatataatcaacatgcaattcaattgttatgaaactcaatcttatggtatacttcaattgctatgaaactcaatctcc 26033105  T
Q  367 tcacagttcgttgatgcataatg 389  Q
    |||||||| ||||||||||||||    
T  26033106 tcacagtttgttgatgcataatg 26033128  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 48469460 - 48469400
Alignment:
Q  168 acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaagaattatt 228  Q
    |||||||||| | ||||||||||| ||| ||| |||| |||||||||| ||||||||||||    
T  48469460 acttttttgtgtgtgtgaccaaatagagggtccaaatccttgtgtccactcaagaattatt 48469400  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 25954320 - 25954434
Alignment:
Q  117 gtataacaaataataattaaataaatattagttttcaaatgattatagtat----acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgt 212  Q
    |||||| ||||||||||||||||   |||| ||||||||||||||||  ||    |||||||||| | ||||||||||| ||| |||  ||| |||||||    
T  25954320 gtataagaaataataattaaatatc-attaattttcaaatgattatatcatgtccacttttttgtgtgtgtgaccaaatagagggtcctaatccttgtgt 25954418  T
Q  213 ccattcaagaattatt 228  Q
    ||| ||||||||||||    
T  25954419 ccactcaagaattatt 25954434  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 19023459 - 19023347
Alignment:
Q  124 aaataataattaaataaatattagttttcaaatgattatagtat----acttt--tttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccatt 217  Q
    |||||||||||||||||  |||| ||||||||||||||||||||    |||||  | ||| | ||||||||||| ||  ||| |||||||||||||||      
T  19023459 aaataataattaaataataattaattttcaaatgattatagtatgtcaacttttgtgtgtgtgtgtgaccaaatagaaagtccaaattcttgtgtccacc 19023360  T
Q  218 caagaattatttt 230  Q
    ||| |||||||||    
T  19023359 caataattatttt 19023347  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 33718024 - 33717964
Alignment:
Q  167 tacttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaagaattat 227  Q
    ||||||||| | |||||||||||||  |  ||| |||| ||||||||||||||||||||||    
T  33718024 tacttttttttttatgtgaccaaataaatggtccaaatccttgtgtccattcaagaattat 33717964  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 11863366 - 11863458
Alignment:
Q  128 aataattaaataaatattagttttcaaatgattata----gtatacttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccat 216  Q
    ||||||| |||||  |||| ||||||||||||||||    || ||||||||| | | ||||||||||| ||| |||||||||||| |||||||    
T  11863366 aataatttaataatcattaattttcaaatgattataacatgtctacttttttttttgtgtgaccaaatagagggtctaaattcttatgtccat 11863458  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 3731217 - 3731325
Alignment:
Q  124 aaataataattaaataaatattagttttcaaatgattatagtat----acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattca 219  Q
    |||||| ||||||||||  |||| |||| |||||||||||| ||    |||||||||| | |||||| |||| ||| ||| |||||||||||||||   |    
T  3731217 aaataacaattaaataatcattaatttttaaatgattatagcatgtccacttttttgtgtgtgtgactaaatagagggtccaaattcttgtgtccaccta 3731316  T
Q  220 agaattatt 228  Q
    |||||||||    
T  3731317 agaattatt 3731325  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 28492226 - 28492119
Alignment:
Q  124 aaataataattaaataaatattagttttcaaatgattatagtat----acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattca 219  Q
    ||||||||||||||||  ||||| |||||||||||||| |  ||    |||||||||| | || |||||||| |||  ||||||| |||||||||| |||    
T  28492226 aaataataattaaatat-tattaattttcaaatgattacatcatgttcacttttttgtgtgtgcgaccaaatagaggatctaaatccttgtgtccactca 28492128  T
Q  220 agaattatt 228  Q
    |||||||||    
T  28492127 agaattatt 28492119  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 43377649 - 43377755
Alignment:
Q  124 aaataataattaaataaatattagttttcaaatgattatagtata--cttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaag 221  Q
    |||||| ||||||||||  |||| |||| |||||||||||  |||  |  |||| ||| |||||| |||| ||| ||| |||||||||||||||| ||||    
T  43377649 aaataacaattaaataatcattaatttttaaatgattataacatatccacttttttatgtgtgactaaatagagggtccaaattcttgtgtccatccaag 43377748  T
Q  222 aattatt 228  Q
    |||||||    
T  43377749 aattatt 43377755  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 10110850 - 10110910
Alignment:
Q  168 acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaagaattatt 228  Q
    |||||||||| ||||| ||||||| ||| ||| ||||  ||||||||| ||||||||||||    
T  10110850 acttttttgtgtatgtaaccaaatagagggtccaaatcattgtgtccactcaagaattatt 10110910  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 11471268 - 11471207
Alignment:
Q  167 tacttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaagaattatt 228  Q
    |||||||||| || ||||| ||||| || |||| |||||||||||||||||| | |||||||    
T  11471268 tacttttttgcatgtgtgatcaaatagaatgtccaaattcttgtgtccattcgaaaattatt 11471207  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 49077150 - 49077210
Alignment:
Q  168 acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaagaattatt 228  Q
    |||||||||||| | |||||||||  || ||| |||||||||| ||||| |||||||||||    
T  49077150 acttttttgtatgtatgaccaaataaagggtccaaattcttgtatccatccaagaattatt 49077210  T

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Target: scaffold0385 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 12824 - 12884
Alignment:
Q  168 acttttttgtatatgtgaccaaatcgagtgtctaaattcttgtgtccattcaagaattatt 228  Q
    |||||||||| |||||||||| || ||| ||| ||||  ||||||||| ||||||||||||    
T  12824 acttttttgtgtatgtgaccatatagagggtccaaatctttgtgtccactcaagaattatt 12884  T

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