View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_high_12 (Length: 460)
Name: NF18489_high_12
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 42859345 - 42859446
Alignment:
| Q |
178 |
taatcgaaatttacattaacctctcttcaagatactagcgggcttgaacccaaaactttcaaatttaacatccatctttttaccactaaattaaacctag |
277 |
Q |
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| T |
42859345 |
taatcgaaatttacattaacctctcttgaagatactagcgggtttgaacccaagactttcaaatttaacatccatctttttaccactaaattaaacctag |
42859444 |
T |
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| Q |
278 |
ag |
279 |
Q |
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|| |
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| T |
42859445 |
ag |
42859446 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 449
Target Start/End: Original strand, 42859540 - 42859615
Alignment:
| Q |
369 |
tttcattttggtcacttagcttaaaaatatcagatgttttgatcttttaaactataaaatttagatatttcggtcattcat |
449 |
Q |
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| T |
42859540 |
tttcattttggtcacttaacttaaaaatattagatgttttgatcttttaa-----aaaatgtagacatttcggtcattcat |
42859615 |
T |
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