View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_high_16 (Length: 401)
Name: NF18489_high_16
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 38370378 - 38370750
Alignment:
| Q |
19 |
taccatctgcttcaattttaacaaagtagttccaaacattaaaccttttaagcttcttatttggtggttcatggtcaccctcagaatatgctgagttaca |
118 |
Q |
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| T |
38370378 |
taccatctgcttcaattttaacaaagtagttccaaacattaaaccttttaagcttcttatttggtggttcatgatcaccatcagaatatgctgagttaca |
38370477 |
T |
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| Q |
119 |
gctctcaccaataaaatccatactacatnnnnnnnnnnnnnnnnnnnntcaaacaaacaaacacactcaaactctaccacattcgaaactcattagcgtg |
218 |
Q |
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| T |
38370478 |
gctctcaccaataaaatccatactacataaaaaagaagaaaaaaaaaatcaaacaaataaacacactcaaactctaccacattcgaaactcattagcgtg |
38370577 |
T |
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| Q |
219 |
tatagcaatatacaaaaacgacaaccctgaggattaattttacttgcaatcaaagagataacagactcttgaagtggagttaatgaaaatgccaaaagaa |
318 |
Q |
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| T |
38370578 |
tatagcaatatacaaaaacgacaaccctgaggattaattttacttgctatcaaagagataacagactcttgaagtggaattaatgaaaatgccaaaagaa |
38370677 |
T |
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| Q |
319 |
ttgttttcattattttcaaaattgcat-atcgcttagctaacatttcattttctctacatcacaacggttcat |
390 |
Q |
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| T |
38370678 |
ttgttttcattattttcaaaattgcatcatcgcttagctaacatttcattttctctacattacaacggttcat |
38370750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 38375090 - 38375179
Alignment:
| Q |
32 |
aattttaacaaagtagttccaaacattaaaccttttaagcttcttatttggtggttcatggtcaccct---cagaatatgctgagttaca |
118 |
Q |
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| T |
38375090 |
aattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcagaatcaccgtcaccagaatatgctgagttaca |
38375179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 38380288 - 38380337
Alignment:
| Q |
39 |
acaaagtagttccaaacattaaaccttttaagcttcttatttggtggttc |
88 |
Q |
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| T |
38380288 |
acaaagtagttccaaacattaaaccttttaagccttttctttggaggttc |
38380337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 12573996 - 12574073
Alignment:
| Q |
312 |
aaaagaattgttttcattattttcaaaattgcat-atcgcttagctaacatttcattttctctacatcacaacggttca |
389 |
Q |
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| T |
12573996 |
aaaagaattgttttcattatttccataaatgcatcatc-catagctagcatttcatcttctctccatcacaatggttca |
12574073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 38217089 - 38217051
Alignment:
| Q |
307 |
atgccaaaagaattgttttcattattttcaaaattgcat |
345 |
Q |
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| T |
38217089 |
atgccaaaagaattgttttcattatttccaaaaatgcat |
38217051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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