View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18489_high_21 (Length: 277)
Name: NF18489_high_21
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 15730776 - 15730530
Alignment:
| Q |
14 |
caatacatagagaagaggaagataagacaaagcgtgaagcacaagttacatagcttgaaactcaagtcacattttagttagttgcattatttcacttgta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15730776 |
caatacatagagaagaggaagataagacaaagcgtgaagcacaagttacatagcttgaaactcaagtcacattttagttagttgcatt---tcacttgta |
15730680 |
T |
|
| Q |
114 |
atttcattttcatttagcgctcatttagttaattacaacagttatgatgggttgacactgatcaagtgtatataagcttgtcacttgtaaattttctgtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15730679 |
atttcattttcatttagcgctcatttagttaattacaacagttatgatgggttgacactgatcaagtgtatataagcttgtcacttgtaaattttctgtt |
15730580 |
T |
|
| Q |
214 |
acaatgaattataattcggtttagcacattcagttcatcttcttctttct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15730579 |
acaatgaattataattcggtttagcacattcagttcatcttcttctttct |
15730530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 26967011 - 26967068
Alignment:
| Q |
102 |
atttcacttgtaatttcattttcatttagcgctcatttagttaattacaacagttatg |
159 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||| |||||| |||||||||||||| |
|
|
| T |
26967011 |
atttcatttgtaatttcattttaatttagcttacatgtagttagttacaacagttatg |
26967068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 25079610 - 25079550
Alignment:
| Q |
102 |
atttcacttgtaatttcattttcatttagcgctcatttagttaattacaacagttatgatg |
162 |
Q |
| |
|
|||||| ||| || |||| |||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
25079610 |
atttcatttgaaaattcagtttcatttcgcgctcatttagttagttatcacagttatgatg |
25079550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University