View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_high_24 (Length: 249)
Name: NF18489_high_24
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39556870 - 39556649
Alignment:
| Q |
18 |
catagtacataatgagtgataattaaagagattaaattaatcaattaccattacttgatatggaaattcaagaaaagtgcatggttgagcttgattcatc |
117 |
Q |
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| T |
39556870 |
catagtacataatgagtgataattaaagagattaaattaatcaattaccattacttgatatggaaattcaagaaaagtgcatggttgagcttgattcatc |
39556771 |
T |
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| Q |
118 |
atttcccttatttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccg |
217 |
Q |
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| T |
39556770 |
atttcccttatttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccg |
39556671 |
T |
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| Q |
218 |
ctcgcaaaaggattagtctctg |
239 |
Q |
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| T |
39556670 |
ctcgcgaaaggattagtctctg |
39556649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 32002004 - 32002047
Alignment:
| Q |
135 |
tcttctttttcttcttgtaagggatacccctagccttagcttga |
178 |
Q |
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| T |
32002004 |
tcttctttttcttcttgtaaggaattcctctagccttagcttga |
32002047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 4863408 - 4863330
Alignment:
| Q |
135 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagc |
213 |
Q |
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| T |
4863408 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagc |
4863330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 30942248 - 30942143
Alignment:
| Q |
129 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaagg |
228 |
Q |
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||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || |||||||| |
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| T |
30942248 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
30942149 |
T |
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| Q |
229 |
attagt |
234 |
Q |
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|||||| |
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| T |
30942148 |
attagt |
30942143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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