View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18489_high_3 (Length: 678)
Name: NF18489_high_3
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 25 - 410
Target Start/End: Complemental strand, 16060866 - 16060477
Alignment:
| Q |
25 |
ttccgacaccaaatcatttcaaatccgactctttgaaccatttcaagtttcttcagctttctatttgaatgtacgaaagtttgaatttgagcacttgttt |
124 |
Q |
| |
|
|||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16060866 |
ttccaacaccaaattgtctcaaatccaactctttgaaccatttcaagtttcttcagctttccatttcaatgtacgaaagtttgaatttgagcacttgttt |
16060767 |
T |
|
| Q |
125 |
gtggtagcattgcacaaatgtttcttgcaaaatgtgaatctagtaatggaattatgatgtttacatctagaaccgacaacaattgtacctctacaaattt |
224 |
Q |
| |
|
||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16060766 |
gtgttagcgttgcacagatgtttcttgcaaaatgtgaatctagtaatggaattatgatgtttacatctagaaccaacaacaattgtacctctacaaattt |
16060667 |
T |
|
| Q |
225 |
gaagtaagaactttaacatgttttccatttttcttagaaaatgcacacaacaataaatatc---accaattgctagtct------tatatgcttctttcc |
315 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
16060666 |
ggagtaagaactttaacatgttttccttttttcttagaaaatgcacacaacagtaaatatcattaccgattgctagtcttatatatatatgcttctttcc |
16060567 |
T |
|
| Q |
316 |
cttgacctcgatatacattggatgttgtcgatcctcatatcaatcaggttatacatatattttaatatccatttcattcaaaggtcttgtccatt |
410 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16060566 |
cgtgacctcgatatacatttgatgttgtcgatcctcatatcaatcagg-----catatattttaatatccatttcattcaaaggtcttgtccatt |
16060477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 405 - 661
Target Start/End: Complemental strand, 16060442 - 16060184
Alignment:
| Q |
405 |
tccatttaagatattgttccat--gagtcattcttgagcaatggaacaatatcaagacctttgaataaaatggatattaaaatatttgaagaaactgcta |
502 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
16060442 |
tccatttgagatattgttccatatgagtcattcttgagcaatggaacaatatcaagacctttgaattaaatgggtattaaaatatttgaagaaactgcta |
16060343 |
T |
|
| Q |
503 |
ctaaagatggaaccaaggatcgacaatgttaagcatatatctaatccaagggaagacagtgcatgagcctagcaattcgtaataatatatatagttgagc |
602 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16060342 |
ctaaagatggaaccaaggatcgacaatgtcaagcgtatatctaatccaagggaagacagtgtatgagcctagcaattcgtaataatatatacagttgagc |
16060243 |
T |
|
| Q |
603 |
acatttctaaaataagtagaataccttgttaaagttcttactacaatatgtgggggtac |
661 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16060242 |
acatttctaaaataaatagaaaaccttgttaaagttcttactacaatatgtgtgggtac |
16060184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 469 - 585
Target Start/End: Complemental strand, 16074316 - 16074200
Alignment:
| Q |
469 |
aaaatggatattaaaatatttgaagaaactgctactaaagatggaaccaaggatcgacaatgttaagcatatatctaatccaagggaagacagtgcatga |
568 |
Q |
| |
|
|||||||||||||||||||||| |||| | | |||||| ||||| || ||| || ||||||| |||| |||||| || ||||||||| ||||| || | |
|
|
| T |
16074316 |
aaaatggatattaaaatatttgtagaaccagatactaaggatggtacggagggtcaacaatgtcaagcgtatatcatatacaagggaaggcagtgtatta |
16074217 |
T |
|
| Q |
569 |
gcctagcaattcgtaat |
585 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
16074216 |
gactagcaattcgtaat |
16074200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 585
Target Start/End: Complemental strand, 16062921 - 16062805
Alignment:
| Q |
469 |
aaaatggatattaaaatatttgaagaaactgctactaaagatggaaccaaggatcgacaatgttaagcatatatctaatccaagggaagacagtgcatga |
568 |
Q |
| |
|
|||||||||||||||||||||| |||| | | |||||| ||||| | ||| || ||||||| |||| |||||| || ||||||||| ||||| || | |
|
|
| T |
16062921 |
aaaatggatattaaaatatttgtagaaccagatactaaggatggttcggagggtcaacaatgtcaagcgtatatcatatacaagggaaggcagtgtatta |
16062822 |
T |
|
| Q |
569 |
gcctagcaattcgtaat |
585 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
16062821 |
gactagcaattcgtaat |
16062805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 16097776 - 16097687
Alignment:
| Q |
187 |
acatctagaaccgacaacaattgtacctctacaaatttgaagtaagaactttaacatgttttccatttttcttagaaaatgcacacaacaata |
279 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||| |||||||||| |||||||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
16097776 |
acatcttgaaccatcaataattgtacctctaataatt-gaagtaagaattttaacattttttcc--ttttcttaagaaatgcacacaacaata |
16097687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 16062557 - 16062676
Alignment:
| Q |
36 |
aatcatttcaaatccgactctttgaaccatttcaagtttcttcagctttctatttgaatgtacgaaagtttgaatttgagcacttgtttgtggtagcatt |
135 |
Q |
| |
|
||||||| ||||| | ||||| |||||||| ||| |||||||||||||| ||||||||| |||| ||| ||||||| | |||||| || ||| || |
|
|
| T |
16062557 |
aatcattgcaaatttggctcttcgaaccattgcaattttcttcagctttcctattgaatgtatgaaa-ttttaatttgaactcttgttcatgtcagcgtt |
16062655 |
T |
|
| Q |
136 |
gcacaaatgtttcttgcaaaa |
156 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
16062656 |
gcacaaatgtttcatgcaaaa |
16062676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 16073952 - 16074071
Alignment:
| Q |
36 |
aatcatttcaaatccgactctttgaaccatttcaagtttcttcagctttctatttgaatgtacgaaagtttgaatttgagcacttgtttgtggtagcatt |
135 |
Q |
| |
|
||||||| ||||| | ||||| |||||||| || |||||||||||||| ||||||||| |||| ||| ||||||||| |||||| || ||| || |
|
|
| T |
16073952 |
aatcattacaaatttggctcttcgaaccattgtaattttcttcagctttcctattgaatgtatgaaatttt-aatttgagctcttgttcatgtcagcgtt |
16074050 |
T |
|
| Q |
136 |
gcacaaatgtttcttgcaaaa |
156 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
16074051 |
gcacaaatgtttcctgcaaaa |
16074071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 16075013 - 16074959
Alignment:
| Q |
161 |
aatctagtaatggaattatgatgtttacatctagaaccgacaacaattgtacctc |
215 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| || ||| |||||||||||| |
|
|
| T |
16075013 |
aatctagtaacggaattatgatgcctacatctagagccaacaccaattgtacctc |
16074959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 16060483 - 16060515
Alignment:
| Q |
455 |
caagacctttgaataaaatggatattaaaatat |
487 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
16060483 |
caagacctttgaatgaaatggatattaaaatat |
16060515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 563
Target Start/End: Complemental strand, 55446819 - 55446697
Alignment:
| Q |
441 |
caatggaacaatatcaagacctttgaataaaatggatattaaaatatttgaagaaactgctactaaagatggaaccaaggatcgacaatgttaagcatat |
540 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| || | || |||||| ||||||| || | |||| || || | ||||||||||||| |||||||| |
|
|
| T |
55446819 |
caatggaacaatatcaaggcctttggatgaaacggttgttcaaatatctgaagaacatgatgctaaggaagggattttggatcgacaatgtcaagcatat |
55446720 |
T |
|
| Q |
541 |
atctaatccaagggaagacagtg |
563 |
Q |
| |
|
|| ||||||||||||| ||||| |
|
|
| T |
55446719 |
gtcgaatccaagggaaggcagtg |
55446697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University