View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18489_high_9 (Length: 491)
Name: NF18489_high_9
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 26155044 - 26154587
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26155044 |
tgagctgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
26154945 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26154944 |
tgatgatggtcacattaacaccatgctttgcaaatagtctagctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
26154845 |
T |
|
| Q |
211 |
aagtttgttatgggattgttgagactccattgttgcttggttctattactgctagagttgatatttaattgtaggtaccaatgaagtgtttaatggtatg |
310 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26154844 |
aagttggttatgggattgttgagactccattgttgcttggttctattactgctagagttgatatttagttgtaggtaccaatgaagtgtttaatggtatg |
26154745 |
T |
|
| Q |
311 |
taccaaaagtaatttttccttcatgtgtttaacagattcacatgaatgaagcacgaatttcaaaacacttccatgtgtaaggaagaatatacgctttaat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
26154744 |
taccaaaagtaatttttccttcatgtgtttaacagatccacatgaatgaaccacgaatttcataacactttcatgtgtagggaagaatatacgctttaat |
26154645 |
T |
|
| Q |
411 |
ttaatggtagtagtaggtaccaaaaggaatttttccttcatttgtttaacagatccacatg |
471 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26154644 |
ttaatggta---gtaggtaccgaaagtaatttttccttcatttgtttaacagatccacatg |
26154587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 26178924 - 26178681
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
26178924 |
tgagctgaagggaactgtataagatgagttttgatggagtatcctgaattgaagtcactgtctatagatttttggaatgttgaagcattggcatgtgtag |
26178825 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
||||||||| ||||||||||||||| | || ||||||||||||||||| ||||||||| ||||||| |||||| ||||| |||||||||| ||||| |
|
|
| T |
26178824 |
cgatgatggtaacattaacaccatgcatggcgaatagtcttgctgtgtctatcataggaatcatatgaccaggagttggaaatggaagaaaaacaacatg |
26178725 |
T |
|
| Q |
211 |
aagtttgttatgggattgttgagactccattgttgcttggttct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26178724 |
aagtttgttatgggattgttgagactccattgttgcttggttct |
26178681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 19103871 - 19104087
Alignment:
| Q |
29 |
ataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtagtgatgatggtcacattaa |
128 |
Q |
| |
|
||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| || ||||||| |
|
|
| T |
19103871 |
ataagttgagttttgatggagtatcctgaattgaagtcactgtctatggatttttggaatgtggaagcattggcatgagtagcaatgattgtaacattaa |
19103970 |
T |
|
| Q |
129 |
caccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatgaagtttgttatgggattg |
228 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19103971 |
caccatgtttggcaaatagtcttgctgtgtctatcataggaatcatatggcctggagttggatatggaagaaaagttacatgaagttggttatgggattg |
19104070 |
T |
|
| Q |
229 |
ttgagactccattgttg |
245 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
19104071 |
ttgagattccattgttg |
19104087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 26301652 - 26301429
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
26301652 |
tgagctgaagggaactgaataagttgagttttaatagggtatcctgaattgaagtcatcgtctatagatttttggaatgttgaagcattggcatgtgtag |
26301553 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||| ||||||| |
|
|
| T |
26301552 |
tgatgatggtaacattaacaccatgtttggcaaatagtcttgctgtgtctatcataggattcatatgaccaggagttggaaatggaagaaaaattacatg |
26301453 |
T |
|
| Q |
211 |
aagtttgttatgggattgttgaga |
234 |
Q |
| |
|
||||| ||||| |||||||||||| |
|
|
| T |
26301452 |
aagttggttattggattgttgaga |
26301429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 26082571 - 26082337
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||||||| ||||||| ||||| || |||||||| | |||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
26082571 |
tgagatgacgggaactgaataagctgagttttgatggagtatcctgaattgaagtcactgtcaatggctttttgaaatgttgaagcattggcatgtgtag |
26082472 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||| | ||||| |||||||||||||||||| |||||| ||||| |||| ||| || |
|
|
| T |
26082471 |
tgatgatggtaacattaacaccatgcatggcaaatagtcttgctgtggctatcattggattcatatggccaggagttggatatggaacaaaaattatctg |
26082372 |
T |
|
| Q |
211 |
aagtttgttatgggattgttgagactccattgttg |
245 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| |
|
|
| T |
26082371 |
aagttggttatgagattgttgagactccattgttg |
26082337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 26106358 - 26106124
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||||||| ||||||| ||||| || |||||||| | |||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
26106358 |
tgagatgacgggaactgaataagctgagttttgatggagtatcctgaattgaagtcactgtcaatggctttttgaaatgttgaagcattggcatgtgtag |
26106259 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||| | ||||| |||||||||||||||||| |||||| ||||| |||| ||| || |
|
|
| T |
26106258 |
tgatgatggtaacattaacaccatgcatggcaaatagtcttgctgtggctatcattggattcatatggccaggagttggatatggaacaaaaattatctg |
26106159 |
T |
|
| Q |
211 |
aagtttgttatgggattgttgagactccattgttg |
245 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| |
|
|
| T |
26106158 |
aagttggttatgagattgttgagactccattgttg |
26106124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 26191106 - 26190869
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||| | |||||||| |||||||| | ||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
26191106 |
tgagctgaagggaattcaataagatgagttttgatggagtatcctaaactgaagtcactgtctatggttttttggaatgttgaagcattggcatgtgtag |
26191007 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
26191006 |
taatgatggttacattaacaccatgtttggctaatagtcttgcagtgtcaatcataggaatcatatggccaggagatggaaatggaagaaaagttacatg |
26190907 |
T |
|
| Q |
211 |
aagtttgttatgggattgttgagactccattgttgctt |
248 |
Q |
| |
|
|||| |||||||||||||||||| | |||| |||||| |
|
|
| T |
26190906 |
aagtgggttatgggattgttgagatttcattattgctt |
26190869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 26203735 - 26203531
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
26203735 |
tgagctgaagggaactgaataagatgagtcttgatggagtatcctgaattgaagtcactgtctatcgctttttggaaggttgaagcattagcatgtgtag |
26203636 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
26203635 |
tgatgatggtaacattaacaccatgtttggcaaatagtcttgctgtgtctatcataggaatcatatggccaggagttggaaatggaagaaaagttacatg |
26203536 |
T |
|
| Q |
211 |
aagtt |
215 |
Q |
| |
|
|||| |
|
|
| T |
26203535 |
cagtt |
26203531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 38 - 254
Target Start/End: Complemental strand, 26297259 - 26297043
Alignment:
| Q |
38 |
gttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtagtgatgatggtcacattaacaccatgct |
137 |
Q |
| |
|
|||||||| | ||||||| || ||| |||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
26297259 |
gttttgatggagtatcctaaactgatgtcactatctatggatttttggaaccttgaagcattggcatgtgtagtgatgatggttacatcaacaccatgct |
26297160 |
T |
|
| Q |
138 |
ttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatgaagtttgttatgggattgttgagactc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| | ||||| ||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
26297159 |
ttgcaaatagtcttgctgtgtcaatcatagggttcatatgaccagcagatggatatggaagaaagacaacatgaagtttgttattggattgttgagactc |
26297060 |
T |
|
| Q |
238 |
cattgttgcttggttct |
254 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26297059 |
cattgttgcttggttct |
26297043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 26242232 - 26241957
Alignment:
| Q |
17 |
gaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtagtgatga |
116 |
Q |
| |
|
|||||||||| | ||| || |||||||| | ||||||| || ||| ||||| ||||||||||||||||| |||||||||| ||||| ||| |||| |
|
|
| T |
26242232 |
gaagggaactgaagaagttgagttttgatggagtatcctaaactgacatcactatctatggatttttggaaccttgaagcattggcatgtgtaagtatga |
26242133 |
T |
|
| Q |
117 |
tggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatgaagttt |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||| |||||||||| ||||||||||| |
|
|
| T |
26242132 |
tggtaacattaacaccatgctttgcaaatagtcttgcagtgtcaatcatagggttcatatggccaatagctggatatggaagaaaaacaacatgaagttt |
26242033 |
T |
|
| Q |
217 |
gttatgggattgttgagactccattgttgcttggttctattactgctagagttgatatttaattgtaggtaccaat |
292 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||| |
|
|
| T |
26242032 |
gttatgggattgttgagattccattgttgcttggttctattactaggagaattgatatttaagggtaggttccaat |
26241957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 26128408 - 26128164
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||| || | ||||||| || || |||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
26128408 |
tgagctgaagggaactgaataagttgagttttaatggagtatcctaaactggtgtcactgtctatggctttttggaatgttgaggcattagcatgtgtag |
26128309 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
26128308 |
tgatgatggtaacattaacaccatgcatggcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatatgaaagaaaaacaacatg |
26128209 |
T |
|
| Q |
211 |
aagtttgttatgggattg------ttgagactccattgttgcttg |
249 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
26128208 |
aagttggttatggaattgcagagattgagactccattgttgcttg |
26128164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 26250659 - 26250390
Alignment:
| Q |
38 |
gttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtagtgatgatggtcacattaacaccatgct |
137 |
Q |
| |
|
|||||||| | ||||||| || ||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
26250659 |
gttttgatggagtatcctaaactgatgtcactatctatggatttttggaaccttgaagcattagcatgtgtagtgatgatggtaacattaacaccatgtt |
26250560 |
T |
|
| Q |
138 |
ttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatgaagtttgttatgggattgtt------- |
230 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||| |||| | ||||| |||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
26250559 |
tagcaaatagtcttgcagtgtcaatcatagggttcatatgaccagcagatggatatggaagaaaaacaacatgaagttggttattggattgttgagattg |
26250460 |
T |
|
| Q |
231 |
--gagactccattgttgcttggttctattactgctagagttgatatttaattgtaggtaccaatgaagtg |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
26250459 |
aggagaatccattgttgcttggttctattactaagagagttgatatttaagggtaggtaccaatgaagtg |
26250390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 26223373 - 26223175
Alignment:
| Q |
11 |
tgagatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtag |
110 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| | |||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||| |
|
|
| T |
26223373 |
tgagctgaagggaactgtataagatgagttttgatggagtatcctgaattgaagtcacagtctacagatttttggaatgtggaagcattggcatgtgtag |
26223274 |
T |
|
| Q |
111 |
tgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacat |
209 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | ||||||| |||||| ||||| |||||||||||| |||| |
|
|
| T |
26223273 |
tgatgatggtaacattaacaccatgtttggcaaatagtcttgctgtgtcaatcattgaaatcatatgaccaggagttggaaatggaagaaaagtgacat |
26223175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 26185008 - 26184876
Alignment:
| Q |
116 |
atggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatgaagtt |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||| |||||| ||||| |||| |||||||||||| |
|
|
| T |
26185008 |
atggtgacattaacaccatgctttgcaaatagtcttgatgtggctatcatgggattcatatggccaggagttggatatggaacaaaaattacatgaagtt |
26184909 |
T |
|
| Q |
216 |
tgttatgggattgttgagactccattgttgctt |
248 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||| |
|
|
| T |
26184908 |
tgttatgggattattgggagtccattgttgctt |
26184876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 26207180 - 26207078
Alignment:
| Q |
107 |
gtagtgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagtta |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| | |
|
|
| T |
26207180 |
gtagtgatgatggtaacattaacaccatgctttgcaaatagtcttgctgtgtcaatcatagggttcatatggccaggagttggatatggtagaaaagtaa |
26207081 |
T |
|
| Q |
207 |
cat |
209 |
Q |
| |
|
||| |
|
|
| T |
26207080 |
cat |
26207078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 26259656 - 26259567
Alignment:
| Q |
95 |
gcattagcatgcgtagtgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccagga |
184 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26259656 |
gcattggcatgtgtagtgataatggtaacattaataccatgctttgcaaatagtcttgctgtgtcaatcatagggttcatatggccagga |
26259567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 26154631 - 26154528
Alignment:
| Q |
310 |
gtaccaaaagtaatttttccttcatgtgtttaacagattcacatgaatgaagcacgaatttcaaaacacttccatgtgtaaggaagaatatacgctttaa |
409 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || ||| | | |||||||||||||||| |
|
|
| T |
26154631 |
gtaccgaaagtaatttttccttcatttgtttaacagatccacatgaatgaaccacgaatttcaaaacactttcacgtgcaggaaagaatatacgctttac |
26154532 |
T |
|
| Q |
410 |
ttta |
413 |
Q |
| |
|
|||| |
|
|
| T |
26154531 |
ttta |
26154528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 26226715 - 26226613
Alignment:
| Q |
107 |
gtagtgatgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagtta |
206 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| || |||||| |||||||| | |
|
|
| T |
26226715 |
gtagtgatgatggtaacatcaacaccatgctttgcaaatagccttgctgtgtcaatcatagggttcatatgaccaggagttacatgtggtagaaaagtaa |
26226616 |
T |
|
| Q |
207 |
cat |
209 |
Q |
| |
|
||| |
|
|
| T |
26226615 |
cat |
26226613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 26239418 - 26239354
Alignment:
| Q |
349 |
cacatgaatgaagcacgaatttcaaaacacttccatgtgtaaggaagaatatacgctttaattta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
26239418 |
cacatgaatgaagcacgaatttcaaaacactttaatgtgtagtgaagaatatacgctttaattta |
26239354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 26240101 - 26240040
Alignment:
| Q |
38 |
gttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcatt |
99 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
26240101 |
gttttaatagggtatgctgaattgaagtcactctctatggctttttggaatgttgaagcatt |
26240040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 26178652 - 26178619
Alignment:
| Q |
264 |
agagttgatatttaattgtaggtaccaatgaagt |
297 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
26178652 |
agagttgatatttaatggtaggtaccaatgaagt |
26178619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 44903079 - 44902849
Alignment:
| Q |
14 |
gatgaagggaacttgataagatgtgttttgatagggtatcctgaattgaagtcactgtctatggatttttggaatgttgaagcattagcatgcgtagtga |
113 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| || ||||| ||||||| |
|
|
| T |
44903079 |
gatgaagggaactgaataagctgagttttgatagagtatcctgaattgaagtcactgtctatggattcttggaaagttgaagcgttggcatgtgtagtga |
44902980 |
T |
|
| Q |
114 |
tgatggtcacattaacaccatgctttgcaaatagtcttgctgtgtcaatcataggattcatatggccaggacttggatgtggaagaaaagttacatgaag |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
44902979 |
tgatggtaacattaacaccatgctttgcaaatagtcttgctgtgtctaccatgggaatcatatggccaggagttggatatggaagaaaaactacatgaag |
44902880 |
T |
|
| Q |
214 |
tttgttatgggattgttgagactccattgtt |
244 |
Q |
| |
|
|| ||||| |||||||||||| ||||||||| |
|
|
| T |
44902879 |
ttggttattggattgttgagaatccattgtt |
44902849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University