View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18489_low_1 (Length: 785)

Name: NF18489_low_1
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18489_low_1
NF18489_low_1
[»] chr3 (10 HSPs)
chr3 (208-767)||(30717123-30717682)
chr3 (7-209)||(30717707-30717909)
chr3 (474-762)||(30705153-30705447)
chr3 (585-767)||(30698830-30699012)
chr3 (39-110)||(44717077-44717148)
chr3 (599-745)||(30708389-30708535)
chr3 (39-113)||(26007779-26007853)
chr3 (656-762)||(30799850-30799956)
chr3 (134-188)||(26007679-26007733)
chr3 (680-757)||(30791206-30791283)
[»] chr1 (5 HSPs)
chr1 (87-188)||(44901416-44901512)
chr1 (214-259)||(36495558-36495603)
chr1 (151-188)||(33185039-33185076)
chr1 (151-188)||(33858188-33858225)
chr1 (151-188)||(33922698-33922735)
[»] chr8 (1 HSPs)
chr8 (112-188)||(5124499-5124575)
[»] scaffold0004 (1 HSPs)
scaffold0004 (133-186)||(228047-228101)
[»] chr5 (1 HSPs)
chr5 (112-188)||(30874658-30874734)
[»] chr4 (1 HSPs)
chr4 (109-163)||(30496703-30496757)


Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 208 - 767
Target Start/End: Complemental strand, 30717682 - 30717123
Alignment:
Q  208 ccgctacccgctatcccactcttggggtcggccgctatccgggattgactacatagaaattaatacatatgaataagaaatgaactggctttgagggcag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717682 ccgctacccgctatcccacttttggggtcggccgctatccgggattgactacatagaaattaatacatatgaataagaaatgaactggctttgagggcag 30717583  T
Q  308 caacatggaaaatatgtacttatttgttatgacacataggtttggctctttaacatcttttttggatctgcacatgctctagtgtagtgtgttgtacctg 407  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30717582 caacatggaaaatatggacctatttgttatgacacataggtttggctctgtaacatctttcttggatctgcacatgctctagtgtagtgtgttgtacctg 30717483  T
Q  408 ctgtgtttgtgtaggtggtttgtttatctgtgtatggagggttttctgctatcataggctaattcattaagtgctgatgattcaaaacatatatgtgact 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717482 ctgtgtttgtgtaggtggtttgtttatctgtgtatggagggttttctgctatcataggctaattcattaagtgctgatgattcaaaacatatatgtgact 30717383  T
Q  508 gtaatgtcagtgtgctcatctgtagtattaatctattaatggcaatgttttgttcataacttgtgttgctaatttgtctttcttacagctaattgctaac 607  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717382 gtaatgttagtgtgctcatctgtagtattaatctattaatggcaatgttttgttcataacttgtgttgctaatttgtctttcttacagctaattgctaac 30717283  T
Q  608 gaagagtttgtgaatcaagtactatctcgaacaccaataaagcgtatagcagaaacacatgaagtgtcttccttggtgactttcctttgcctgccagctg 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717282 gaagagtttgtgaatcaagtactatctcgaacaccaataaagcgtatagcagaaacacatgaagtgtcttccttggtgactttcctttgcctgccagctg 30717183  T
Q  708 cttcctacatcactggccagattgtttctgttgatggaggatttactgtgaatgggtttc 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717182 cttcctacatcactggccagattgtttctgttgatggaggatttactgtgaatgggtttc 30717123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 30717909 - 30717707
Alignment:
Q  7 ggagcagcacagaggaaaatcgcaacggagaggatcccggccaatccttgacttttgttggagtttggaattggatgtaatgttttgattaagacttgtg 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30717909 ggagcagcccagaggaaaatcgcaacggagaggatcccggccaatccttgacttgtgttggagtttggaattggatgtaatgttttgattaagacttgtg 30717810  T
Q  107 aatgtttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatactttacctcattattgtaatttg 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  30717809 aatgtttttgatttatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttttttatactttacctcattcatgtaatttg 30717710  T
Q  207 tcc 209  Q
    |||    
T  30717709 tcc 30717707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 474 - 762
Target Start/End: Complemental strand, 30705447 - 30705153
Alignment:
Q  474 ttaagtgctgatgattcaaaa-catatatgtgactgtaatgtcagtgtgctcatctgtag-tattaatctattaatggcaatgttttgttcataacttgt 571  Q
    ||||||| |||||| |||||| ||||| ||| |||||| ||||| |||| |||||||||| |||||||| |  |||||||||||| ||| |||||||| |    
T  30705447 ttaagtgttgatgaatcaaaaacatatctgtaactgtactgtcactgtgatcatctgtagctattaatcca--aatggcaatgttatgtacataacttat 30705350  T
Q  572 gttgctaat------ttgtctttcttacagctaattgctaacgaagagtttgtgaatcaagtactatctcgaacaccaataaagcgtatagcagaaacac 665  Q
    |||||||||      ||  ||||||||||| | ||||||||| ||||||||||| || ||||| ||||||||||||| ||||| || |||||||||||||    
T  30705349 gttgctaataattctttacctttcttacagtttattgctaacaaagagtttgtggatgaagtattatctcgaacaccgataaaacggatagcagaaacac 30705250  T
Q  666 atgaagtgtcttccttggtgactttcctttgcctgccagctgcttcctacatcactggccagattgtttctgttgatggaggatttactgtgaatgg 762  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||| ||||||||||| || |||||    
T  30705249 atgaagtgtctgccttggtgactttcctttgcctgccagctgcttcctacatcactggacaaactgtttccgttgacggaggatttaccgtaaatgg 30705153  T

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Target: chr3; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 585 - 767
Target Start/End: Complemental strand, 30699012 - 30698830
Alignment:
Q  585 ctttcttacagctaattgctaacgaagagtttgtgaatcaagtactatctcgaacaccaataaagcgtatagcagaaacacatgaagtgtcttccttggt 684  Q
    ||||||||||| ||  ||||||| |||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  30699012 ctttcttacagttatatgctaacaaagagtttgtgaatgaagtactatctcgaacaccgataaaacggatagcagaaacacatgaagtgtcttccttggt 30698913  T
Q  685 gactttcctttgcctgccagctgcttcctacatcactggccagattgtttctgttgatggaggatttactgtgaatgggtttc 767  Q
    | |||||||||| |||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||| |||||| ||||    
T  30698912 ggctttcctttgtctgccagctgcttcttacatcactggacaagttatttctgttgatggaggatttactgcgaatggatttc 30698830  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 44717148 - 44717077
Alignment:
Q  39 gatcccggccaatccttgacttttgttggagtttggaattggatgtaatgttttgattaagacttgtgaatg 110  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  44717148 gatcccggccaatccttgaattttgttggtatttggaattggatgtaatgttttgattaagacttgggaatg 44717077  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 599 - 745
Target Start/End: Complemental strand, 30708535 - 30708389
Alignment:
Q  599 attgctaacgaagagtttgtgaatcaagtactatctcgaacaccaataaagcgtatagcagaaacacatgaagtgtcttccttggtgactttcctttgcc 698  Q
    |||||||||  ||||| ||| ||| ||||| ||||| ||||||| ||| | || |||||||||||  |||| || ||||  ||||||||||||||||||     
T  30708535 attgctaacttagagtctgtaaatgaagtattatctagaacaccgatacaacggatagcagaaacggatgacgtatcttaattggtgactttcctttgct 30708436  T
Q  699 tgccagctgcttcctacatcactggccagattgtttctgttgatgga 745  Q
    |||||||||||||| |||||| ||| || | | ||||||||||||||    
T  30708435 tgccagctgcttcccacatcattggacaaactatttctgttgatgga 30708389  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 26007853 - 26007779
Alignment:
Q  39 gatcccggccaatccttgacttttgttggagtttggaattggatgtaatgttttgattaagacttgtgaatgttt 113  Q
    ||||||||||||||||||| ||||||| |  |||| |||| ||||| ||||||||||||||||||||||||||||    
T  26007853 gatcccggccaatccttgatttttgtttgtatttgaaatttgatgtcatgttttgattaagacttgtgaatgttt 26007779  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 656 - 762
Target Start/End: Original strand, 30799850 - 30799956
Alignment:
Q  656 gcagaaacacatgaagtgtcttccttggtgactttcctttgcctgccagctgcttcctacatcactggccagattgtttctgttgatggaggatttactg 755  Q
    |||||| | |||||||| || || |||||| |||||||||| ||||||||||| || |||||||| || ||  || ||| ||||||||||||||| ||||    
T  30799850 gcagaatctcatgaagtttcatcgttggtggctttcctttgtctgccagctgcgtcttacatcaccggacaagttatttgtgttgatggaggattaactg 30799949  T
Q  756 tgaatgg 762  Q
    |||||||    
T  30799950 tgaatgg 30799956  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 26007733 - 26007679
Alignment:
Q  134 gagttttgagttatttgtttaattttatatcaaatatatggttgtttatacttta 188  Q
    ||||||| |||| ||||||||||||||| | ||||||||| ||||||||| ||||    
T  26007733 gagttttaagttgtttgtttaattttattttaaatatatgtttgtttatatttta 26007679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 757
Target Start/End: Original strand, 30791206 - 30791283
Alignment:
Q  680 ttggtgactttcctttgcctgccagctgcttcctacatcactggccagattgtttctgttgatggaggatttactgtg 757  Q
    |||||||||||||||||| | || ||||| || ||||||||||| ||  || ||| ||||||||| ||||| ||||||    
T  30791206 ttggtgactttcctttgcttacctgctgcatcatacatcactggacaagttatttgtgttgatgggggattaactgtg 30791283  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 44901512 - 44901416
Alignment:
Q  87 tgttttgattaagacttgtgaatgtttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatactt 186  Q
    ||||||||||||||||||||     ||||||| ||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  44901512 tgttttgattaagacttgtg-----ttttgatttatgaatgtttcatgagctttgagttatttgtttacttttatattaaatatatggttgtttatattt 44901418  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 36495603 - 36495558
Alignment:
Q  214 cccgctatcccactcttggggtcggccgctatccgggattgactac 259  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  36495603 cccgctatcccacttttggggttggccgctatccgggattgactac 36495558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 33185076 - 33185039
Alignment:
Q  151 tttaattttatatcaaatatatggttgtttatacttta 188  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33185076 tttaattttatattaaatatatgtttgtttatacttta 33185039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 33858225 - 33858188
Alignment:
Q  151 tttaattttatatcaaatatatggttgtttatacttta 188  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33858225 tttaattttatattaaatatatgtttgtttatacttta 33858188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 33922698 - 33922735
Alignment:
Q  151 tttaattttatatcaaatatatggttgtttatacttta 188  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33922698 tttaattttatattaaatatatgtttgtttatacttta 33922735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 5124499 - 5124575
Alignment:
Q  112 ttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatacttta 188  Q
    ||||||| ||||| |||| |||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  5124499 ttttgatttatgaatgtttcatgagtttttagttatttgtttaattttatactaaatatatgtttgtttatacttta 5124575  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 228047 - 228101
Alignment:
Q  133 tgagttttgagttatttgtttaattttatatcaaatatatgg-ttgtttatactt 186  Q
    |||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  228047 tgagttgtgagttgtttgtttaattttatattaaatatatggtttgtttatactt 228101  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 30874734 - 30874658
Alignment:
Q  112 ttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatatcaaatatatggttgtttatacttta 188  Q
    ||||||| ||||  |||| || |||||||| || || | ||||||||||||| ||||||||| ||||||||||||||    
T  30874734 ttttgatttatggatgtttcacgagttttgggtgatatatttaattttatattaaatatatgtttgtttatacttta 30874658  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 30496703 - 30496757
Alignment:
Q  109 tgtttttgatgtatgagtgttccatgagttttgagttatttgtttaattttatat 163  Q
    ||||||| || | ||| |||| |||||||||||||| ||||||||||||||||||    
T  30496703 tgtttttcatatgtgaatgtttcatgagttttgagtcatttgtttaattttatat 30496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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