View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_10 (Length: 476)
Name: NF18489_low_10
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 7487916 - 7487459
Alignment:
| Q |
18 |
cagttcatacggcaatcgccattttgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487916 |
cagttcatacggcaatcgccattttgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgac |
7487817 |
T |
|
| Q |
118 |
tatcgcaactttgcatgggatggtgttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487816 |
tatcgcaactttgcatgggatggtgttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttggg |
7487717 |
T |
|
| Q |
218 |
tgatggatcaaagtggatggcacaaaaggtgcagcattggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttgg |
317 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487716 |
tgatggatcaaagtggatggcacaaaaagtgcaacattggcccacttgtgtcaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttgg |
7487617 |
T |
|
| Q |
318 |
aggaaaggttggagaaccgctcacatcgtatgactatcaaggcaaatcactttaccaatttcaaattgatgttgattatactaaatttcatgagtatgtg |
417 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487616 |
aggaaaggttggagaaccactcacatcgtatgactatcaaggcaaatcactttaccaatttcaaattgatgttgattatactaaatttcatgagtatgtg |
7487517 |
T |
|
| Q |
418 |
ccaagcatagctcccttgtcaatctagatagctaggacaccaaactaggatatatttt |
475 |
Q |
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| T |
7487516 |
ccaagcatagctcccttgtcaatctagatagctaggacaccaaactaggatatatttt |
7487459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 56 - 468
Target Start/End: Original strand, 7873472 - 7873887
Alignment:
| Q |
56 |
tatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgggatggtgttgccgagatcaa |
155 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||| | ||||| ||| | | |||| |||||||||||| || |
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| T |
7873472 |
tatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaagaccgcaaatttctacgcgatgatgttgccgagattaa |
7873571 |
T |
|
| Q |
156 |
aggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggatggcacaaaaggtgcagcatt |
255 |
Q |
| |
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| T |
7873572 |
gggttcccttgcttatgttgtgcagcatcacttcgattctcctgtcgtttcgaacatttgggtaatggatcaaagtggatggcacaaaaagtacaacatt |
7873671 |
T |
|
| Q |
256 |
---ggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccgctcacatcgtatgact |
352 |
Q |
| |
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||||||| |||| |||||| ||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||| |||||| |
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| T |
7873672 |
attggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctcaaatcatatgacc |
7873771 |
T |
|
| Q |
353 |
atcaaggcaaatcactttaccaatttcaaattgatgttgattatactaaatttcatgagtatgtgccaagcatagctcccttgtcaatctagatagctag |
452 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| || || | ||||||| | | |||||||||||||||||||| |||||||||| | |||||| ||| |
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| T |
7873772 |
atcaaggcaactcactttgccaatttcaaattgattttcataagactaaatattaagagtatgtgccaagcatagcccccttgtcaaccaagataggtag |
7873871 |
T |
|
| Q |
453 |
gacaccaaactaggat |
468 |
Q |
| |
|
|||||||||||||||| |
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| T |
7873872 |
gacaccaaactaggat |
7873887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 132 - 475
Target Start/End: Complemental strand, 7495277 - 7494925
Alignment:
| Q |
132 |
atgggatggtgttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagt |
231 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||| | || |||||||||| || |||||| ||||||||| |||||||||||| |
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| T |
7495277 |
atgggataatgttgccgagatcaagggttcccttgcttatgttgtgcagaatcacgtcaatgctcctgtcgtcttgcacatttgggtaatggatcaaagt |
7495178 |
T |
|
| Q |
232 |
ggatggcacaaaaggtgcagcattggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggag |
331 |
Q |
| |
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|||||| |||| || | |||||||||| || | |||||||||| |||| |||||||||||||||| || ||||| |||||||||||||| ||||| |
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| T |
7495177 |
ggatggagaaaaatgtataacattggcccagttttttcaatgtttcgcatgtttggcctttggaagaatagcaatcaactccttggaggaaagtttggaa |
7495078 |
T |
|
| Q |
332 |
aaccgctcacatcgtatgactatcaaggcaaatcactttaccaatttcaaattgatgttgattatactaaa---------tttcatgagtatgtgccaag |
422 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
7495077 |
aaccgctcacatcatatgaccatcaaggcaactcactttgccaatttcaaattgatgttgatgatactgaacatttttggattcatgagtatgtgccaag |
7494978 |
T |
|
| Q |
423 |
catagctcccttgtcaatctagatagctaggacaccaaactaggatatatttt |
475 |
Q |
| |
|
||||||||| ||||| | | ||||||||||||||||||||||||||||||||| |
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| T |
7494977 |
catagctcctttgtctaccaagatagctaggacaccaaactaggatatatttt |
7494925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 7475010 - 7474663
Alignment:
| Q |
42 |
tgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgggatggt |
141 |
Q |
| |
|
|||||||||||| ||||||||| |||| || |||| || ||||||||||| ||||| ||||||||||| | | | || |||| |||||||| |
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|
| T |
7475010 |
tgttgcaaatatcctatgctttaactttcgaaacaatcaatttcaccaact--gaggggcaaccttctcagttaaagaccgatgctttctatgggatgac |
7474913 |
T |
|
| Q |
142 |
gttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggatggcaca |
241 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| | || | || | ||| || |||||||| |||||||| ||||||||| | | |
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| T |
7474912 |
gttgccgagatcaaaggctccctttcttatgttgtgcattgtcattttactgattgcgt------gaaaatttgggtaatggatcatagtggatgggaga |
7474819 |
T |
|
| Q |
242 |
aaaggtgcagcattggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccgctcac |
341 |
Q |
| |
|
||| || || |||| || || ||||| |||||||||||||| | || |||||||||||||| |||||| ||||||||||||||| |||| | | ||| | |
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|
| T |
7474818 |
aaaagtacaacattagctcaattgtgccaatgtttcgtatgggcggtctttggaagaatggtgatcaactccttggaggaaaggatggaaagtccctcgc |
7474719 |
T |
|
| Q |
342 |
atcgtatgactatcaaggcaaatcactttaccaatttcaaattgatgttgattata |
397 |
Q |
| |
|
||| |||||| || ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
7474718 |
atcatatgaccatgaaggcaactcactttgccaatttcaaattgatgttgattata |
7474663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 403
Target Start/End: Original strand, 6944389 - 6944518
Alignment:
| Q |
274 |
tttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccgctcacatcgtatgactatcaaggcaaatcactttacc |
373 |
Q |
| |
|
||||| ||||| || ||||||||||| || |||||| |||||||||||| || |||||||| ||||| ||| |||||| |||||||||| ||||||| || |
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|
| T |
6944389 |
tttcgaatgtgcggtctttggaagaacggggatcaactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgcc |
6944488 |
T |
|
| Q |
374 |
aatttcaaattgatgttgattatactaaat |
403 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
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|
| T |
6944489 |
aatttcaaattgatgttgattatgctaaat |
6944518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 472
Target Start/End: Original strand, 7497068 - 7497122
Alignment:
| Q |
418 |
ccaagcatagctcccttgtcaatctagatagctaggacaccaaactaggatatat |
472 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
7497068 |
ccaaacatagctcccttgtcaatctagctagctaggacaccacactaggatatat |
7497122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 7483633 - 7483599
Alignment:
| Q |
405 |
tcatgagtatgtgccaagcatagctcccttgtcaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
7483633 |
tcatgagtatgtgccaagcatagctcccttgtcaa |
7483599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 6944160 - 6944225
Alignment:
| Q |
42 |
tgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaacctt |
107 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| || | || |||||||||||||||||||||||||| |
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| T |
6944160 |
tgttgcaaatatcttatgctttaactttcgcaacgatcaatttcaccaactcagagggccaacctt |
6944225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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