View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_11 (Length: 470)
Name: NF18489_low_11
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 14 - 452
Target Start/End: Complemental strand, 33261762 - 33261315
Alignment:
| Q |
14 |
agatgaatccaattagggttgattgagggatagtattggagggtaaagttccacataacgttgt-ta--aagaaggaaattgtataacgaggaggggaat |
110 |
Q |
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| T |
33261762 |
agatgaatccaattagggttgattgagggatagtattggagggtaaagttccacataacgttgtataacaagaaggaaattgtataatgaggaggggaat |
33261663 |
T |
|
| Q |
111 |
ga--cccctaatttatgtgagagggtattctattttggcaaatgtataac--gaggaggggaatagatcctctaacgtatgattttcatgtgagaagata |
206 |
Q |
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| T |
33261662 |
gaatcctctaatttatgtaagagggtattctattttggcaaatgtataacgagaggaagggaatggatcctctaacgtataattttcacgtgagaagata |
33261563 |
T |
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| Q |
207 |
ttctattttgatttgttnnnnnnngaaaagtaaatcgctttacaaattaatattataatgttgagttagatgtaaaatatctaagataaaatattcataa |
306 |
Q |
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| T |
33261562 |
ttctattttagcttgttaaaaaaa-aagagtaaatcgctttacaaattaatattataatgttgagttagatgtaaaatatctaatataaaatattcatag |
33261464 |
T |
|
| Q |
307 |
ggagaagtaaatgannnnnnnnnnnnnnnnaatagggatacaaattcttttccactttattttctatcaatctcatac---acataacatttgaaatata |
403 |
Q |
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||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33261463 |
ggagaggtaaatgatttttatttattttttaatagggatacaaattctcttacactttattttctatcaatctcatactatgtgtcacatttgaaatata |
33261364 |
T |
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| Q |
404 |
cacacttcgtaaaaaattgtttatttatactaagtttcaatgcaagtta |
452 |
Q |
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| T |
33261363 |
cacacttcctaaaaaattgtttatttatactaagtttcaatgcaagtta |
33261315 |
T |
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