View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18489_low_13 (Length: 456)
Name: NF18489_low_13
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 26640575 - 26640144
Alignment:
| Q |
10 |
ataattctgccggaaaattgatttctaaatccagtcttgcaaacattgttaccaaagcaatctgcacatcaacggaaataatctatttagtattttatca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26640575 |
ataattctgccggaaaattgatttctaaatccagtcttgcaaacattgttaccaaagcaatctgcacatcaacggaaataatctatttagtattttatca |
26640476 |
T |
|
| Q |
110 |
aagtctcattcttgactgcgttgataaaatggagtatgcagattatgcttgacnnnnnnntttatctgtaagaataatcatagaacagtatcaaatactt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26640475 |
aagtctcattcttgactgcgttgataaaatggagtatgcagattatgcttgacaaaaaaatttatctgtaagaataatcatagaacagtatcaaatactt |
26640376 |
T |
|
| Q |
210 |
ttagaaagtgccttttgatcattttgtaatgattcctcccaagatacttgtttgtcattcattgagaccaaggtgtcgaactgatatgcattacattgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26640375 |
ttagaaagtgccttttgatcattttgtaatgattcctcccaagatacttgtttgtcattcattgagaccaaggtgtcgaactgatatgcattacattgtt |
26640276 |
T |
|
| Q |
310 |
ttgctacctgcaaaattgaaagtgagtggaatgaatatgaaatcatcatttgttttacattttatcaagtaatgaaacttacttctgctatagcatggca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26640275 |
ttgctacctgcaaaattgaaagtgagtggaatgaatatgaaatcatcatttgttttacattttatcaagtaatgaaacttacttctgctatagcatggca |
26640176 |
T |
|
| Q |
410 |
tgcctcctcgagaacgtattctttgttgaaag |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26640175 |
tgcctcctcgagaacgtattctttgttgaaag |
26640144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 26661292 - 26661248
Alignment:
| Q |
395 |
tgctatagcatgg-catgcctcctcgagaacgtattctttgttga |
438 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
26661292 |
tgctatagcatgggcatgcctcctcgagaacagattctttgttga |
26661248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University