View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_17 (Length: 335)
Name: NF18489_low_17
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 45686872 - 45686564
Alignment:
| Q |
19 |
tgaataactatagtgcaacaggtttctgacttataaagtttgttgccgcgcattttgttctttagctgcatgaatgctaatattttctttagaagtttat |
118 |
Q |
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| T |
45686872 |
tgaataactatagtgcaacaggtttctgacttataaagtttgttgccgcgcattttgttctttagctgcatgaatgctaatattttctttagaagtttat |
45686773 |
T |
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| Q |
119 |
ctttaaacatgacttactacatggcatcatcgcgtcatttgattcatgtgacttactcttaattggcagaaaaagactttgttgttatgtttttatggta |
218 |
Q |
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| T |
45686772 |
ctttaaacatgacttactacatggcatcatcgcgtcatttgattcatgtgacttactcttaattggcagaaaaagactttgttgttatgtttttatggta |
45686673 |
T |
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| Q |
219 |
tttaagcacaagcacaaaattcttttacaattcttataccttgacacttttatgcttccatctgtaggtaactagtgttggtataaatactgagtgggga |
318 |
Q |
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| T |
45686672 |
tttaagcacaagcacaaaattcttttacaattcttataccttgacacttttatgcttccatctgtaggtaactagtgttggtataaatactgagtgggga |
45686573 |
T |
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| Q |
319 |
ttgatgatg |
327 |
Q |
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| T |
45686572 |
ttgttgatg |
45686564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 1440098 - 1440142
Alignment:
| Q |
276 |
ccatctgtaggtaactagtgttggtataaatactgagtggggatt |
320 |
Q |
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| T |
1440098 |
ccatatgtaggtaactgctgttggtattaatactgagtggggatt |
1440142 |
T |
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