View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_18 (Length: 335)
Name: NF18489_low_18
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 34850179 - 34849876
Alignment:
| Q |
13 |
aatatcatttaaattagtgataatatctttttctcnnnnnnnnnntttaaaataaaatcatatatttggagtttttaatcaattcatgtccgtgagtaaa |
112 |
Q |
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| T |
34850179 |
aatatcatttaaattagtgataatatctttttctcaaaaaaaaaatt-aaaataaaatcatatatttggagtttttaatcaattcatgtccgtgagtaaa |
34850081 |
T |
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| Q |
113 |
taattaatctgcaacttggaagcgctgacaaagtttttgggaagaagctcacttcctccattcacaaacacgtcttcaaatttcaatcacaagtttttgg |
212 |
Q |
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| T |
34850080 |
taattaatctgcaacttggaagcgctgacaaagtttttgggaagaagctcacttcctccattcacaaacacgtcttcaaatttcaatcacaagtttttgg |
34849981 |
T |
|
| Q |
213 |
gaagataacttcatggctaaggaaaagttagaaattaatatgaaactaaagaaacaatttaaagtaaactaattagtcaaaatcagaaaaatgtggggca |
312 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34849980 |
gaagaaaacttcatggctaaggaaaagttagaaattaatatgaaactaaagaaacaatttaaagtaaactaattagtcaaaatcagaaaaatgtggggca |
34849881 |
T |
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| Q |
313 |
tcaat |
317 |
Q |
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||||| |
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| T |
34849880 |
tcaat |
34849876 |
T |
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