View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18489_low_2 (Length: 746)
Name: NF18489_low_2
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 425 - 714
Target Start/End: Original strand, 45545540 - 45545829
Alignment:
| Q |
425 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545540 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
45545639 |
T |
|
| Q |
525 |
tgaaagttgctaacaaaaatttcaaaactgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545640 |
tgaaagttgctaacaaaaatttcaaaactgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
45545739 |
T |
|
| Q |
625 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttacgtgaataagtctgagcttgttggtgagtgtttgttaga |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545740 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttatgtgaataagtctgagcttgttggtgagtgtttgttaga |
45545829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 142 - 350
Target Start/End: Original strand, 45545249 - 45545457
Alignment:
| Q |
142 |
caatggcgtttcagttctgctcctgcgagattggccatgactcgtagagtgcgtcctcttgtttcactgaatccttatatgggtggttggacaattaagg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545249 |
caatggcgtttcagttctgctcctgcgagattggccatgacccgtagagtgcgtcctcttgtttcactgaatccttatatgggtggttggacaattaagg |
45545348 |
T |
|
| Q |
242 |
tcagtgtcacaagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgaccgatgaagatgtaaggaacag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45545349 |
tcagtgtcacaagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatgtaaggaacag |
45545448 |
T |
|
| Q |
342 |
gatatttga |
350 |
Q |
| |
|
|||||||| |
|
|
| T |
45545449 |
aatatttga |
45545457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University