View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18489_low_20 (Length: 278)

Name: NF18489_low_20
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18489_low_20
NF18489_low_20
[»] chr1 (22 HSPs)
chr1 (12-260)||(35593856-35594106)
chr1 (22-226)||(37891561-37891765)
chr1 (14-221)||(23086226-23086433)
chr1 (14-226)||(39513282-39513494)
chr1 (12-226)||(2045275-2045492)
chr1 (22-221)||(29245323-29245522)
chr1 (14-226)||(45503559-45503771)
chr1 (14-226)||(38211020-38211232)
chr1 (22-226)||(50708744-50708948)
chr1 (14-226)||(48650879-48651091)
chr1 (14-226)||(13926328-13926536)
chr1 (111-209)||(2047543-2047641)
chr1 (111-209)||(36866954-36867052)
chr1 (111-226)||(7480470-7480585)
chr1 (111-226)||(9533846-9533961)
chr1 (111-226)||(49787383-49787498)
chr1 (37-212)||(23480935-23481110)
chr1 (111-226)||(42496554-42496669)
chr1 (129-226)||(26211630-26211727)
chr1 (14-134)||(5429226-5429346)
chr1 (165-226)||(45501314-45501375)
chr1 (40-92)||(42605380-42605432)
[»] chr3 (27 HSPs)
chr3 (12-260)||(18201231-18201479)
chr3 (14-226)||(18256107-18256319)
chr3 (12-226)||(36091454-36091671)
chr3 (14-226)||(36947183-36947394)
chr3 (15-226)||(49562435-49562646)
chr3 (15-221)||(35716184-35716390)
chr3 (14-226)||(31487098-31487310)
chr3 (12-226)||(26951376-26951593)
chr3 (22-226)||(18198585-18198789)
chr3 (22-226)||(36087616-36087820)
chr3 (14-226)||(38655949-38656161)
chr3 (14-226)||(52418821-52419032)
chr3 (12-121)||(26951001-26951113)
chr3 (12-121)||(36091934-36092046)
chr3 (111-226)||(13454909-13455024)
chr3 (111-209)||(12825171-12825269)
chr3 (83-209)||(16066876-16067002)
chr3 (111-226)||(16651391-16651506)
chr3 (112-226)||(4594084-4594198)
chr3 (111-209)||(12260798-12260896)
chr3 (119-226)||(854554-854661)
chr3 (111-226)||(26947819-26947934)
chr3 (40-176)||(16725940-16726076)
chr3 (172-226)||(859858-859912)
chr3 (157-219)||(33003918-33003980)
chr3 (165-226)||(11826501-11826562)
chr3 (33-65)||(29679418-29679450)
[»] chr6 (9 HSPs)
chr6 (12-260)||(3591083-3591331)
chr6 (14-226)||(25971066-25971278)
chr6 (22-226)||(25975506-25975710)
chr6 (54-217)||(34265195-34265358)
chr6 (22-226)||(2280814-2281015)
chr6 (111-226)||(33045807-33045922)
chr6 (19-101)||(17905868-17905950)
chr6 (157-226)||(29369539-29369608)
chr6 (165-226)||(33004798-33004859)
[»] chr7 (20 HSPs)
chr7 (15-232)||(3595417-3595635)
chr7 (12-226)||(7893612-7893829)
chr7 (12-226)||(22006836-22007052)
chr7 (39-226)||(35102862-35103048)
chr7 (14-226)||(45115690-45115902)
chr7 (14-226)||(26168704-26168916)
chr7 (14-185)||(32660087-32660258)
chr7 (12-121)||(7893237-7893349)
chr7 (12-121)||(22006461-22006573)
chr7 (111-209)||(17696872-17696970)
chr7 (111-209)||(27715901-27715999)
chr7 (112-226)||(29956435-29956549)
chr7 (111-209)||(16719857-16719955)
chr7 (111-209)||(31100097-31100194)
chr7 (111-226)||(7888824-7888939)
chr7 (127-226)||(32038416-32038515)
chr7 (14-131)||(11642484-11642601)
chr7 (165-226)||(46909359-46909420)
chr7 (37-212)||(16375717-16375892)
chr7 (14-131)||(45286372-45286489)
[»] chr8 (15 HSPs)
chr8 (14-217)||(37589444-37589647)
chr8 (22-226)||(19961497-19961701)
chr8 (14-226)||(22729913-22730125)
chr8 (12-219)||(14994513-14994723)
chr8 (22-185)||(23827637-23827800)
chr8 (111-209)||(406207-406305)
chr8 (111-209)||(18266042-18266140)
chr8 (112-209)||(41376464-41376561)
chr8 (111-209)||(18275055-18275153)
chr8 (14-215)||(604142-604343)
chr8 (14-158)||(4969614-4969758)
chr8 (14-158)||(9885693-9885837)
chr8 (157-226)||(37983473-37983542)
chr8 (35-89)||(43418595-43418649)
chr8 (14-99)||(44434243-44434328)
[»] chr5 (12 HSPs)
chr5 (14-226)||(16678791-16679002)
chr5 (22-226)||(38095537-38095741)
chr5 (12-226)||(32674753-32674970)
chr5 (111-226)||(3607965-3608080)
chr5 (111-226)||(20105120-20105235)
chr5 (111-226)||(30090380-30090495)
chr5 (111-226)||(12655177-12655292)
chr5 (111-226)||(23183962-23184077)
chr5 (111-226)||(23188229-23188344)
chr5 (111-226)||(34761223-34761338)
chr5 (111-226)||(39878057-39878172)
chr5 (14-209)||(19123112-19123307)
[»] chr4 (20 HSPs)
chr4 (14-226)||(36895680-36895891)
chr4 (102-260)||(41944000-41944158)
chr4 (12-226)||(41859899-41860116)
chr4 (12-226)||(52682589-52682806)
chr4 (14-226)||(30388056-30388268)
chr4 (14-226)||(21382511-21382723)
chr4 (29-226)||(28389279-28389476)
chr4 (22-185)||(16908934-16909097)
chr4 (12-121)||(52682214-52682326)
chr4 (14-144)||(29359311-29359441)
chr4 (111-209)||(19515271-19515369)
chr4 (111-209)||(21581661-21581759)
chr4 (138-219)||(37062400-37062483)
chr4 (40-176)||(4882107-4882243)
chr4 (40-134)||(9039315-9039409)
chr4 (157-226)||(31448485-31448554)
chr4 (165-226)||(53288321-53288382)
chr4 (37-101)||(2479423-2479487)
chr4 (165-226)||(42347751-42347812)
chr4 (32-92)||(29968198-29968258)
[»] chr2 (23 HSPs)
chr2 (14-221)||(35432206-35432413)
chr2 (12-226)||(40605225-40605442)
chr2 (12-226)||(13908118-13908334)
chr2 (12-226)||(26455763-26455980)
chr2 (14-226)||(5013593-5013806)
chr2 (22-226)||(207616-207820)
chr2 (14-226)||(1512634-1512846)
chr2 (12-121)||(13907743-13907855)
chr2 (12-121)||(26455388-26455500)
chr2 (111-226)||(13905287-13905402)
chr2 (150-226)||(23455721-23455797)
chr2 (111-209)||(2300779-2300877)
chr2 (111-209)||(6123670-6123768)
chr2 (111-226)||(184091-184206)
chr2 (111-226)||(976110-976225)
chr2 (111-226)||(2449325-2449440)
chr2 (160-226)||(27997517-27997583)
chr2 (160-226)||(28098887-28098953)
chr2 (157-226)||(42109496-42109565)
chr2 (127-226)||(31226738-31226837)
chr2 (165-226)||(19821916-19821977)
chr2 (165-226)||(19842137-19842198)
chr2 (40-176)||(33402123-33402259)
[»] scaffold0097 (3 HSPs)
scaffold0097 (14-226)||(51943-52155)
scaffold0097 (111-226)||(40471-40586)
scaffold0097 (134-226)||(49121-49213)
[»] scaffold0642 (1 HSPs)
scaffold0642 (111-209)||(3356-3454)
[»] scaffold0345 (1 HSPs)
scaffold0345 (111-209)||(13268-13366)
[»] scaffold0105 (1 HSPs)
scaffold0105 (111-209)||(25615-25713)
[»] scaffold0121 (1 HSPs)
scaffold0121 (127-226)||(45550-45649)
[»] scaffold0374 (1 HSPs)
scaffold0374 (165-226)||(1982-2043)
[»] scaffold0013 (2 HSPs)
scaffold0013 (19-131)||(104593-104705)
scaffold0013 (32-101)||(127255-127324)
[»] scaffold0059 (1 HSPs)
scaffold0059 (32-131)||(71360-71459)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 35594106 - 35593856
Alignment:
Q  12 atgaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  35594106 atgaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagtcagagtcagtcgttgaaacatgttggtgtttatctaccgtctcctgtt 35594007  T
Q  112 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35594006 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatggtttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 35593907  T
Q  212 catcaaatgtagt--cttcttttattgtcaggtagcctaacggctagaatt 260  Q
    |||||||||| ||   || |||| ||||||||||||||| |||||||||||    
T  35593906 catcaaatgtggttctttttttttttgtcaggtagcctagcggctagaatt 35593856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 37891765 - 37891561
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||    
T  37891765 tttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccgtcttctgttttttcacatg 37891666  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  37891665 gacaattgtacgtcgcaatatcgagggttacttcaagggatggtttaaagatgttgatcaatgacgaggacggccaagatactgatgtgacatcaaatgt 37891566  T
Q  222 agtct 226  Q
     ||||    
T  37891565 ggtct 37891561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 23086433 - 23086226
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||   |||||| || |||||| |||||||||||||||||||||||||||||||    
T  23086433 gaaggcagtttccgttgtctgtctcatttgcaatgactattaacaagagttggggtcaatctttgaaaaatgttggtgtctatctaccgtctcctgtttt 23086334  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||    
T  23086333 ttcacatggacaattgtacgtcgcaatatcgatggttacttcaagggatggtttaaagatattgatcaatgatgaggacgaccaagatactgatgtgaca 23086234  T
Q  214 tcaaatgt 221  Q
    ||||||||    
T  23086233 tcaaatgt 23086226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 39513494 - 39513282
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  39513494 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 39513395  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| ||||||||||| |||||||||||  ||    
T  39513394 ttcacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgaggacggcgatgataccgatgttgca 39513295  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  39513294 tcaaatgtggtct 39513282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 2045492 - 2045275
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  2045492 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 2045393  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  2045392 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 2045293  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  2045292 ttgcatcaaatgtggtct 2045275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 29245323 - 29245522
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  29245323 tttccgatatctgcctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 29245422  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    ||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| ||||||||||| |||||||||||  ||||||||||    
T  29245423 gacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgaggacggcgatgataccgatgttgcatcaaatgt 29245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 45503771 - 45503559
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  45503771 gaaggcagtttccgtaatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 45503672  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||| ||||||  ||    
T  45503671 ttcacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatgttgca 45503572  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  45503571 tcaaatgtggtct 45503559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 38211232 - 38211020
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |  |||||||||||||||| |||| ||||||| ||||    
T  38211232 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcaatcgctagaacatgttggtgtctacctactgtctcctatttt 38211133  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| |||||||||||||||||| | |||||||| |||| || ||||||||||||||| ||||| ||||||||||| |||||||||||  ||    
T  38211132 ttcacatggacagttgtacgtcgcaatatcacgagttacttcgaggggtggtttaaagatattgattaatgacgaggacggcgatgataccgatgttgca 38211033  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  38211032 tcaaatgtggtct 38211020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 50708744 - 50708948
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  50708744 tttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 50708843  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||| |||||||||||||||||| | ||||| || |||| || |||||| |||||||| ||||| || |||||||| |||||||||||  ||||||||||    
T  50708844 gacagttgtacgtcgcaatatcacgtgttacatcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgttgcatcaaatgt 50708943  T
Q  222 agtct 226  Q
     ||||    
T  50708944 ggtct 50708948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 48650879 - 48651091
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||| ||||||| ||||    
T  48650879 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctactgtctcctatttt 48650978  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| ||||||||||||||||||  ||||||||  |||| || |||||| |||||||| ||||| || ||| | || |||||||||||  ||    
T  48650979 ttcacatggacagttgtacgtcgcaatatcacaggttactttgagggctggtttaaaaatattgattaatgacgacgacagagatgataccgatgttgca 48651078  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  48651079 tcaaatgtggtct 48651091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 13926536 - 13926328
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||||||||| |  ||||||   |||||||||||||||||||| ||||    
T  13926536 gaaggcagtttccgacatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatg---gtgtctatctaccgtctcctatttt 13926440  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    | |||||| ||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || ||||| || |||||||||||  ||    
T  13926439 t-cacatgcacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggtgatgataccgatgttgca 13926341  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  13926340 tcaaatgtggtct 13926328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 2047641 - 2047543
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||| ||||    
T  2047641 tttttcacatggacagttgtacgtcacaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccaatgt 2047543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 36867052 - 36866954
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||| ||||    
T  36867052 tttttcacatggacagttgtacgtcacaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccaatgt 36866954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 7480470 - 7480585
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  7480470 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 7480569  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  7480570 gcatcaagtgtggtct 7480585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 9533846 - 9533961
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  9533846 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 9533945  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  9533946 gcatcaagtgtggtct 9533961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 49787498 - 49787383
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |  ||| | |||||||||||     
T  49787498 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacggtggcaatgataccgatgtt 49787399  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  49787398 gcatcaagtgtggtct 49787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 23481110 - 23480935
Alignment:
Q  37 tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcg 136  Q
    |||||||||||||| |||||||| || || || |||||| | |||||||||||||| ||||||||  | ||||| ||||| || ||||| ||||| || |    
T  23481110 tcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcaaggacagttgtatgttg 23481011  T
Q  137 caatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgac 212  Q
    | || ||||| ||||| || || || |   ||||||||||||||| |||||| || || ||||||||| |||||||    
T  23481010 ctatttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtgac 23480935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 42496554 - 42496669
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||| ||||||     
T  42496554 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgatatcgatgtt 42496653  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  42496654 gcatcaagtgtggtct 42496669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 26211630 - 26211727
Alignment:
Q  129 gtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||||||||||| |||||||||| |||| || || |||||||||||| ||||||||||||| |||  |||| |||||  |||||||||| ||||    
T  26211630 gtacgtcgcaatatcacgggttacttcgaggggtggttaaaagatattgattaatgatgaggacgacgataatactgatgttgcatcaaatgtggtct 26211727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 5429226 - 5429346
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    |||| |||||||| ||  |||| |||||||||||||| |||||||| || || || |||||| | |||||||||||||| ||||||||  | ||||| ||    
T  5429226 gaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtatt 5429325  T
Q  114 ttcacatggacaattgtacgt 134  Q
    ||| ||| |||| ||||||||    
T  5429326 ttctcatagacagttgtacgt 5429346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 45501375 - 45501314
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||| |||||||| ||||| ||||||||||| |||||||||||  |||||||||| ||||    
T  45501375 tttaaatatattgattaatgacgaggacggcgatgataccgatgttgcatcaaatgtggtct 45501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 42605432 - 42605380
Alignment:
Q  40 tttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgt 92  Q
    |||||||||||||| ||||| ||||| | ||| || |||||||||||||||||    
T  42605432 tttgcaatgactataaacaaaagccaagatcaatctttgaaacatgttggtgt 42605380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 18201231 - 18201479
Alignment:
Q  12 atgaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtt 111  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18201231 atgaaagcaatttctgttatctgtctcatttgcaataactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcctgtt 18201330  T
Q  112 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 211  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18201331 ttttcacatggacaattgtacgtcgcaatataaagggttacttcaaaggatggtttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 18201430  T
Q  212 catcaaatgtagtcttcttttattgtcaggtagcctaacggctagaatt 260  Q
    ||||||||||  |||| |||| |||||||||| |||| |||||||||||    
T  18201431 catcaaatgtgatcttttttttttgtcaggtaacctagcggctagaatt 18201479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 18256107 - 18256319
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  18256107 gaaggcagtttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccgtctcctgtttt 18256206  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||| |||||||||    
T  18256207 ttcacatggacaattgtacgtcgcaatatcgagggttacttcaagggatggtttaaagatgttgatcaatgacgaggacggccaagatactgatgtgaca 18256306  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  18256307 tcaaatgtggtct 18256319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 36091671 - 36091454
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  36091671 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 36091572  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  36091571 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtgttttaaaaatattgattaatgacgacgacggcgatgatatcgatg 36091472  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  36091471 ttgcatcaaatgtggtct 36091454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 36947394 - 36947183
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||||| ||    
T  36947394 gaaggcagtttccgatatgtgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctgt-tt 36947296  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| ||||||| ||| |||||||||||  ||    
T  36947295 ttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgaggacgacgatgataccgatgttgca 36947196  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  36947195 tcaaatgtggtct 36947183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 49562646 - 49562435
Alignment:
Q  15 aaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttt 114  Q
    |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| |||||    
T  49562646 aaggcaattttcgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttt 49562547  T
Q  115 tcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacat 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| ||| | || |||| ||| |||| ||||||  |||    
T  49562546 tcacatggacaattgtacgtcgcaatatcacgggttacttcaaggggtggtttaaaaatattgattaataacgacgacgacgatgatatcgatgttgcat 49562447  T
Q  215 caaatgtagtct 226  Q
    ||||||| ||||    
T  49562446 caaatgtggtct 49562435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 35716184 - 35716390
Alignment:
Q  15 aaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttt 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| |||||    
T  35716184 aaggcaatttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttt 35716283  T
Q  115 tcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacat 214  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||| |||  ||| ||||||  |||    
T  35716284 tcacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacgacgataatatcgatgttgcat 35716383  T
Q  215 caaatgt 221  Q
    |||||||    
T  35716384 caaatgt 35716390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 31487098 - 31487310
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  31487098 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 31487197  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| ||||||||||||||||||  ||||||||| |||| || |||||| |||||||| ||||| || ||| |||| |||||||||||  ||    
T  31487198 ttcacatggacagttgtacgtcgcaatatcacaggttacttcgagggctggtttaaaaatattgattaatgacgacgacagcgatgataccgatgttgca 31487297  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  31487298 tcaaatgtggtct 31487310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 26951376 - 26951593
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  26951376 atgaaggcaatttccgttatctgtcgtctcatttgcagtgactattaacaagagttagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 26951475  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| ||||     
T  26951476 gttttttcacatggacagttgtacgtcacaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgata 26951575  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  26951576 ttgcatcaaatgtggtct 26951593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 18198585 - 18198789
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| ||||| |||||||||||||||||||||||||||| || ||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  18198585 tttccgatatctttctcatttgcaatgactattaacaagagtcaaggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 18198684  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||| |||||||||||| ||||| ||| |||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||  ||||||||||    
T  18198685 gacagttgtacgtcgcactatcacgggctacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgttgcatcaaatgt 18198784  T
Q  222 agtct 226  Q
     ||||    
T  18198785 ggtct 18198789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 36087820 - 36087616
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| ||||||||||||||||||| |||||||||||||| | |||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  36087820 tttccgatatctgtctcatttgcaatcactattaacaagagtccgggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 36087721  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    ||||||| ||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || || ||||| |||| ||||||  ||||||||||    
T  36087720 gacaattttacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgatggcgatgatatcgatgttgcatcaaatgt 36087621  T
Q  222 agtct 226  Q
     ||||    
T  36087620 ggtct 36087616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 38656161 - 38655949
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||||||  ||||| ||||| |  |||||||||||||||| |||||||||||| ||||    
T  38656161 gaaggcagtttccgatatttgtctcatttgcaatgactattaacaagagttagggttagtcgctagaacatgttggtgtctacctaccgtctcctatttt 38656062  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| ||||||||   ||| || |||||||| |||| ||||||  ||    
T  38656061 ttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattgctgacgacgacggcgatgatatcgatgttgca 38655962  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  38655961 tcaaatgtggtct 38655949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 52419032 - 52418821
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| |  || ||||||||||||| ||||||| |||| ||||    
T  52419032 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagggtcagggtcagtcgctagaatatgttggtgtctacctaccgtttcctatttt 52418933  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    | ||||| |||| ||||||||| |||||||| |||||||||| |||| || ||||||||||||||| ||||| ||||||||||| | |||||||||  ||    
T  52418932 t-cacattgacagttgtacgtcacaatatcacgggttacttcgaggggtgttttaaagatattgattaatgacgaggacggcgatggtaccgatgttgca 52418834  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  52418833 tcaaatgtggtct 52418821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 26951001 - 26951113
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  26951001 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 26951100  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  26951101 gttttttcacatg 26951113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 36092046 - 36091934
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    ||||||||||||||| |||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||    
T  36092046 atgaaggcaatttccattatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctatcttctcct 36091947  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  36091946 gttttttcacatg 36091934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 13455024 - 13454909
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||| |||||||||  |||| || ||||||||||||||| |||||||| |||||||| |||||||||||     
T  13455024 tttttcacatggacagttgtacgtcgcaatatcacgggttactttgaggggtggtttaaagatattgattaatgatgacgacggcgatgataccgatgtt 13454925  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  13454924 gcatcaagtgtggtct 13454909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 12825171 - 12825269
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||    
T  12825171 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgt 12825269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 16066876 - 16067002
Alignment:
Q  83 atgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaa 182  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||| || | |||||||||||||| || ||| |||| ||| ||||| ||||| ||    
T  16066876 atgttggtgtctatttaccttctcctgttttttcacatggacaattgtatgttgtaatatcaagggttattttaagagatggtttgaagatcttgataaa 16066975  T
Q  183 tgatgaggacggcgaagataccgatgt 209  Q
    | |||| ||||| ||||||||| ||||    
T  16066976 ttatgaagacggtgaagataccaatgt 16067002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 16651391 - 16651506
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||| |||||||||  |||| || ||||||||||||||| |||||||| ||||| || |||||||||||     
T  16651391 tttttcacatggacagttgtacgtcgcaatatcacgggttactttgaggggtggtttaaagatattgattaatgatgacgacggtgatgataccgatgtt 16651490  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  16651491 gcatcaagtgtggtct 16651506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 4594084 - 4594198
Alignment:
Q  112 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 211  Q
    ||||||||| |||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||| ||| |||||||||||      
T  4594084 ttttcacatagacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacgacgatgataccgatgttg 4594183  T
Q  212 catcaaatgtagtct 226  Q
    |||||| ||| ||||    
T  4594184 catcaagtgtggtct 4594198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 12260798 - 12260896
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  12260798 tttttcacatggacagttgtacgttgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 12260896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 854554 - 854661
Alignment:
Q  119 atggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaa 218  Q
    |||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||| | ||||  |||||||    
T  854554 atggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgatatcaatgttgcatcaaa 854653  T
Q  219 tgtagtct 226  Q
    ||| ||||    
T  854654 tgtggtct 854661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 26947819 - 26947934
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  26947819 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 26947918  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  26947919 gcatcaagtgtggtct 26947934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 16726076 - 16725940
Alignment:
Q  40 tttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcgcaa 139  Q
    |||||||||||||| || || || || ||||| || |||||||||||||| || ||| | || || ||| | ||||| ||||| |||||||| || ||      
T  16726076 tttgcaatgactataaagaaaagtcaaggtcaatctttgaaacatgttggcgtatatttgccatcgcctatcttttctcatggtcaattgtatgtggctt 16725977  T
Q  140 tatcaagggttacttcaagggatgatttaaagatatt 176  Q
    | ||||||||||||||||| || | ||| ||||||||    
T  16725976 tgtcaagggttacttcaagagaaggtttgaagatatt 16725940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 859858 - 859912
Alignment:
Q  172 atattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||| ||||| ||||||||||| |||||||||||  |||||||||| ||||    
T  859858 atattgattaatgacgaggacggcgatgataccgatgttgcatcaaatgtggtct 859912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 33003980 - 33003918
Alignment:
Q  157 agggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaat 219  Q
    |||| ||||||||| |||||||| ||||| |||||||||||  ||||||||||  ||||||||    
T  33003980 aggggtgatttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaat 33003918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 11826501 - 11826562
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  11826501 tttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 11826562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 29679450 - 29679418
Alignment:
Q  33 tgtctcatttgcaatgactattaacaagagcca 65  Q
    |||||||||||||||||||||||| ||||||||    
T  29679450 tgtctcatttgcaatgactattaataagagcca 29679418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 3591083 - 3591331
Alignment:
Q  12 atgaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtt 111  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3591083 atgaaagcaatttccgttatctgtctcatttgcaataactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccatctcctgtt 3591182  T
Q  112 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3591183 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaaaggatggtttaaagatattgatcaatgatgaggacggcgaagatatcgatgtga 3591282  T
Q  212 catcaaatgtagtcttcttttattgtcaggtagcctaacggctagaatt 260  Q
    ||||||||||  |||| |||| |||||||||| |||| || ||||||||    
T  3591283 catcaaatgtgatcttttttttttgtcaggtaacctagcgactagaatt 3591331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 25971278 - 25971066
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  25971278 gaaggcagtttctgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccatctcctgtttt 25971179  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||| | ||||||| |||||||||    
T  25971178 ttcacatgaacaattgtacatcgcaatatcgagggttacttcaagggatggtttaaagatgttgatcaatgacgaggacgaccaagatactgatgtgaca 25971079  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  25971078 tcaaatgtggtct 25971066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 25975710 - 25975506
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||    
T  25975710 tttcagttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccatctactgttttttcacatg 25975611  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
     |||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||| | ||||||| |||||||||||||||||    
T  25975610 aacaattgtacatcgcaatatcgagggttacttcaagggatggtttaaagatgttgatcaatgacgaggacgaccaagatactgatgtgacatcaaatgt 25975511  T
Q  222 agtct 226  Q
     ||||    
T  25975510 ggtct 25975506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 34265358 - 34265195
Alignment:
Q  54 taacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcgcaatatcaagggttact 153  Q
    ||||||||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  34265358 taacaagagtcagggtcagtctttgtaaaatgttggtgtctatctaacgtctcctgttttttgacatggacaattgtacgtcgcaatattgagggttact 34265259  T
Q  154 tcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaa 217  Q
    |||||||||| ||||||||| |||||||||||||| |||||| ||||||  |||||||||||||    
T  34265258 tcaagggatggtttaaagatgttgatcaatgatgaagacggccaagatattgatgtgacatcaa 34265195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 2280814 - 2281015
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  2280814 tttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcggtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 2280913  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||| |||||||||||||||||| |||||||||| |||| || |||||| ||||||||   | |||| |||| ||| |||||||||||  ||||||||||    
T  2280914 gacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgat---taatgacgacgacgatgataccgatgttgcatcaaatgt 2281010  T
Q  222 agtct 226  Q
     ||||    
T  2281011 ggtct 2281015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 33045922 - 33045807
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  33045922 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 33045823  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  33045822 gcatcaagtgtggtct 33045807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 17905950 - 17905868
Alignment:
Q  19 caatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctacc 101  Q
    |||||||| ||  |||| |||||||||||||| |||||||| || || || |||||| | |||||||||||||| ||||||||    
T  17905950 caatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 17905868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 29369608 - 29369539
Alignment:
Q  157 agggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||| ||||||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  29369608 aggggtgatttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 29369539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 33004859 - 33004798
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||||||||||||| ||||| ||||||||| |  ||||||||||  |||||||||| ||||    
T  33004859 tttaaagatattgattaatgacgaggacggcaattataccgatgttgcatcaaatgtggtct 33004798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 3595635 - 3595417
Alignment:
Q  15 aaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  3595635 aaggcaatttccgttatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtatctatctactgtctcctgttttt 3595536  T
Q  115 tcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaag-atattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  3595535 tcacatggacaattgtacatcgcaatatcaagggttacttcaagggatggtttaaagtatattgatcaatgatgaggacggcgaagatacttatgtgaca 3595436  T
Q  214 tcaaatgtagtcttctttt 232  Q
    |||||||| ||||| ||||    
T  3595435 tcaaatgtggtcttttttt 3595417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 7893612 - 7893829
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  7893612 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 7893711  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  7893712 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 7893811  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  7893812 ttgcatcaaatgtggtct 7893829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 22006836 - 22007052
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||    
T  22006836 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtca-tcgttgaaacatgttggtgtttatctaccgtctcct 22006934  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  22006935 gttttttcacatggacaattgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 22007034  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  22007035 ttgcatcaaatgtggtct 22007052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 35102862 - 35103048
Alignment:
Q  39 atttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcgca 138  Q
    |||||||||||||||||||||||| || ||| |||  |||||| |||||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  35102862 atttgcaatgactattaacaagagtcaaggttagtttttgaaaaatgttggtgtttatctact-tctcctgttttttcacatggacaattgtacgtcgca 35102960  T
Q  139 atatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  35102961 atatcgagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggccaagatactgatgtgacatcaaatgtggtct 35103048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 45115690 - 45115902
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  45115690 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 45115789  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||  ||    
T  45115790 ttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgttgca 45115889  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  45115890 tcaaatgtggtct 45115902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 26168704 - 26168916
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  26168704 gaaggcagtttctgatatttgtctcatttgcaatgactattaacaagagttagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 26168803  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| ||||||||   ||| || |||||||| |||| ||||||  ||    
T  26168804 ttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattgctgacgacgacggcgatgatatcgatgttgca 26168903  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  26168904 tcaaatgtggtct 26168916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 32660087 - 32660258
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||| || ||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  32660087 gaaggcagtttccaatatctgtctcatttgcaatgactattaacaagagtcatggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 32660186  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatga 185  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| |  |||||| |||||||| |||||    
T  32660187 ttcacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtagtttaaaaatattgattaatga 32660258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 7893237 - 7893349
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  7893237 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 7893336  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  7893337 gttttttcacatg 7893349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 22006461 - 22006573
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  22006461 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 22006560  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  22006561 gttttttcacatg 22006573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 17696872 - 17696970
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  17696872 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 17696970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 27715901 - 27715999
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  27715901 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaatatattgattaatgacgacgacggcgatgataccgatgt 27715999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 29956435 - 29956549
Alignment:
Q  112 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtga 211  Q
    |||||||||||| | |||||||||||||||||| |||||||||  |||| || |||||||||||| || ||||| ||||||||||| |||||||||||      
T  29956435 ttttcacatggatagttgtacgtcgcaatatcacgggttactttgaggggtggtttaaagatattaattaatgacgaggacggcgatgataccgatgttg 29956534  T
Q  212 catcaaatgtagtct 226  Q
    |||||||||| ||||    
T  29956535 catcaaatgtggtct 29956549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 16719857 - 16719955
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  16719857 tttttcacatggacagttgtacgttgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 16719955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 31100097 - 31100194
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||| | |||||||||||||||||| |||||||||  |||| || ||||||||||||||| ||||| |||||| |||| |||||||||||    
T  31100097 tttttcacatggagagttgtacgtcgcaatatcatgggttactttgaggggtggtttaaagatattgattaatgacgaggac-gcgatgataccgatgt 31100194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 7888824 - 7888939
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || ||||| || |||||||||||     
T  7888824 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggtgatgataccgatgtt 7888923  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  7888924 gcatcaagtgtggtct 7888939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 32038416 - 32038515
Alignment:
Q  127 ttgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||| ||||||  |||||||||| ||||    
T  32038416 ttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatgttgcatcaaatgtggtct 32038515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 11642601 - 11642484
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    |||| |||||||| ||  |||| |||||||||||||| |||||||| |  || || |||||| | |||||||||||||| ||||||||  | ||||| ||    
T  11642601 gaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaattcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtatt 11642502  T
Q  114 ttcacatggacaattgta 131  Q
    ||| || ||||| |||||    
T  11642501 ttctcacggacagttgta 11642484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 46909359 - 46909420
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||||||||||||| ||||| ||||||| ||| |||||||||||  |||||||||| ||||    
T  46909359 tttaaagatattgattaatgacgaggacgacgatgataccgatgttgcatcaaatgtggtct 46909420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 16375892 - 16375717
Alignment:
Q  37 tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcg 136  Q
    |||||||||||||| ||||| || || || |  |||||| | |||||||||||||| ||||||||  | ||||| ||||| || ||||||||||| |  |    
T  16375892 tcatttgcaatgacaattaaaaaaagtcaagcgcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcaaggacaattgtatgatg 16375793  T
Q  137 caatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgac 212  Q
       | ||||| ||||| || || || |   ||||||||||||||| |||||| || || ||||||||| |||||||    
T  16375792 ttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagataccaatgtgac 16375717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 45286372 - 45286489
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    |||| |||||||| ||  |||| |||||||||||||| |||||||| ||  |  | |||||| | |||||||||||||| ||||||||  | ||||| ||    
T  45286372 gaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagttaaaggcagtcgcttaaacatgttggtgtatatctaccaacacctgtatt 45286471  T
Q  114 ttcacatggacaattgta 131  Q
    ||| || ||||| |||||    
T  45286472 ttctcacggacagttgta 45286489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 37589444 - 37589647
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||||| ||||||||||||||||||||||    
T  37589444 gaagacaatttccgttatctgtctcatttgcaatgactattaacaagagtcagggtcagtctatgaaaaatgttggtatctatctaccgtctcctgtttt 37589543  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  37589544 ttcacatggacaattgtatgttgcaatatcgatggttacttcaagggatgatttaaagatattgatcaatgatgaggacggccaagatactgatgtgaca 37589643  T
Q  214 tcaa 217  Q
    ||||    
T  37589644 tcaa 37589647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 19961497 - 19961701
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  19961497 tttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 19961596  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||| |||||||||||||||||| | ||||| || |||| || |||||| |||||||| ||||| || |||||||| |||||||||||  ||||||||||    
T  19961597 gacagttgtacgtcgcaatatcacgagttacatcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgttgcatcaaatgt 19961696  T
Q  222 agtct 226  Q
     ||||    
T  19961697 ggtct 19961701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 22730125 - 22729913
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  22730125 gaaggcagtttccgatatctgtctcatttgcaatgactactaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 22730026  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||| ||| |||| ||||||  ||    
T  22730025 ttcaaatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacgacgatgatatcgatgttgca 22729926  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  22729925 tcaaatgtggtct 22729913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 14994723 - 14994513
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  14994723 atgaaggcaatttccgttatctgtcgtctcatttgcaatgattattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 14994624  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| | ||||||  |||||||| |||||||||| || | || ||| || |||||||| ||||| || |||||||| |||| |||||    
T  14994623 gttttttcacatggacagtcgtacgtgacaatatcacgggttacttcgagaggtggttttaaaatattgattaatgacgacgacggcgatgatatcgatg 14994524  T
Q  209 tgacatcaaat 219  Q
    |  ||||||||    
T  14994523 ttgcatcaaat 14994513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 23827637 - 23827800
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  23827637 tttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcggtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 23827736  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatga 185  Q
    |||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| |||||    
T  23827737 gacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatga 23827800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 406305 - 406207
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||| || |||||||| |||||||||||    
T  406305 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagggatggtttaaagatattgattaatgacgacgacggcgatgataccgatgt 406207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 18266140 - 18266042
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||| |||| || ||||||||||||||| ||||| ||   |||||| |||||||||||    
T  18266140 tttttcacatggacagttgtacatcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacagcggcgatgataccgatgt 18266042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 41376561 - 41376464
Alignment:
Q  112 ttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    |||| |||||| || |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| ||| |||||||    
T  41376561 tttttacatgggcagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgatgccgatgt 41376464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 18275153 - 18275055
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||| |  |||||||| |||||||||| |||| || ||||||||||||||| ||||| ||   |||||| |||||||||||    
T  18275153 tttttcacatggacagttgtacataacaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacagcggcgatgataccgatgt 18275055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 604343 - 604142
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    |||| |||||||| ||  |||| |||||||||||||| |||||||| || || || |||||| | ||| |||||||||| ||||||||  | ||||| ||    
T  604343 gaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaatatgttggtgtatatctaccaacacctgtatt 604244  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||  | ||||| ||||| || ||  | ||||| ||||| || |  || |  |||||||||||||||| |||||| || || ||||||||| |||| |||    
T  604243 ttcttacggacagttgtatgttgctgtttcaagagttacatccaaagaaggattaaagatattgatcactgatgaagatggtgaagataccaatgtaaca 604144  T
Q  214 tc 215  Q
    ||    
T  604143 tc 604142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 4969614 - 4969758
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||||||||| ||  |||| || |||||||||||||||||||| ||  | || |||||  | |||||||| || || ||| | || || ||||||||    
T  4969614 gaaggcaatttccattggctgtttcttttgcaatgactattaacaaaagttaaggccagtctcttaaacatgtgggagtttatttgccatcgcctgtttt 4969713  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaag 158  Q
    ||| ||||| |||||||| || ||| | ||||| |||||||||||    
T  4969714 ttctcatggtcaattgtatgtggcattgtcaagagttacttcaag 4969758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 9885837 - 9885693
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||||||||| ||  |||| || |||||| ||||||||||||| || || || |||||  | |||||||| || || ||| | || || ||||||||    
T  9885837 gaaggcaatttccattggctgtttcttttgcagtgactattaacaaaagtcaaggccagtctcttaaacatgtgggagtttatttgccatcgcctgtttt 9885738  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaag 158  Q
    ||| ||||| |||||||| || ||| | ||||| |||||||||||    
T  9885737 ttctcatggtcaattgtatgtggcattgtcaagagttacttcaag 9885693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 37983542 - 37983473
Alignment:
Q  157 agggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||| ||||||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  37983542 aggggtgatttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 37983473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 43418649 - 43418595
Alignment:
Q  35 tctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttgg 89  Q
    |||||||||  |||||||||||||||||||| || || || ||||||||||||||    
T  43418649 tctcatttgtcatgactattaacaagagccaagggcaatcattgaaacatgttgg 43418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 44434243 - 44434328
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatcta 99  Q
    |||| |||||||| ||  |||| |||||||||||||  |||||||| || || || |||||| | |||||||||||||| ||||||    
T  44434243 gaagacaatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatcta 44434328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 16679002 - 16678791
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  16679002 gaaggcagttttcgttatctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccgtctcctgtttt 16678903  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    || |||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||    
T  16678902 tttacatggacaattgtacgttgcaatatcga-ggttacttcaagggatggtttaaagatattgatcaatgatgaggacgactaagatactgatgtgaca 16678804  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  16678803 tcaaatgtggtct 16678791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 38095741 - 38095537
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  38095741 tttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatattggtgtctatctaccgtctcttgttttttcacatg 38095642  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||    
T  38095641 gacaattgtatgtcgcaatatcgagggttacttcaagggatggtttaaagatgttgatcaatgatgaggacagccaagatactgatgtgacatcaaatgt 38095542  T
Q  222 agtct 226  Q
     ||||    
T  38095541 ggtct 38095537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 32674753 - 32674970
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  32674753 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 32674852  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  32674853 gttttttcacatggacagttgtacgtcgcaatatcaagggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 32674952  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  32674953 ttgcatcaaatgtggtct 32674970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 3608080 - 3607965
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||| |||||||||  |||| || ||||||||||||||| |||||||| |||||||| |||||||||||     
T  3608080 tttttcacatggacagttgtacgtcgcaatatcacgggttactttgaggggtggtttaaagatattgattaatgatgacgacggcgatgataccgatgtt 3607981  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  3607980 gcatcaagtgtggtct 3607965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 20105235 - 20105120
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  20105235 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 20105136  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  20105135 gcatcaagtgtggtct 20105120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 30090495 - 30090380
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||  |||||||||  |||| || ||||||||||||||| |||||||| ||||| || |||||||||||     
T  30090495 tttttcacatggacagttgtacgtcgcaatatcgcgggttactttgaggggtggtttaaagatattgattaatgatgacgacggtgatgataccgatgtt 30090396  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  30090395 gcatcaagtgtggtct 30090380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 12655177 - 12655292
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  12655177 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 12655276  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  12655277 gcatcaagtgtggtct 12655292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 23183962 - 23184077
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  23183962 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 23184061  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  23184062 gcatcaagtgtggtct 23184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 23188229 - 23188344
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  23188229 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 23188328  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  23188329 gcatcaagtgtggtct 23188344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 34761223 - 34761338
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  34761223 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 34761322  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  34761323 gcatcaagtgtggtct 34761338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 39878057 - 39878172
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  39878057 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 39878156  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  39878157 gcatcaagtgtggtct 39878172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 19123112 - 19123307
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    |||| |||||||| ||  |||| ||||||||||||||  ||||||| || || || |||||| | |||||||||||||| ||||||||  | ||||| ||    
T  19123112 gaagacaatttcctttgactgtatcatttgcaatgacagttaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtatt 19123211  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||| || ||||| ||||| || ||  | ||||| ||||  || || || |   ||||||||||||||| |||||| || || ||||||||| ||||    
T  19123212 ttctcacggacagttgtatgttgctgtttcaagagttatatccagagaaggactaaagatattgatcattgatgaagatggtgaagataccaatgt 19123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 36895891 - 36895680
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||  |||||||| || |||||| |||||||||||||||||||||||||||||||    
T  36895891 gaaggcagtttccgttgtctgtctcatttgcaatgactattaacaagattcagggtcaatctttgaaaaatgttggtgtctatctaccgtctcctgtttt 36895792  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    | ||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  36895791 t-cacatggccaattgtacgtcgcaatatcgagggtaacttcaagggatggtttaaagatattgatcaatgatgaggacggccaagatactgatatgaca 36895693  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  36895692 tcaaatgtggtct 36895680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 41944158 - 41944000
Alignment:
Q  102 gtctcctgttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41944158 gtctcctgttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatggtttaaagatattgatcaatgatgaggacggcgaagat 41944059  T
Q  202 accgatgtgacatcaaatgtagtcttcttttattgtcaggtagcctaacggctagaatt 260  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||    
T  41944058 accgatgtgacatcaaatgtggtcttttttttttgtcaggtagcctagcggctagaatt 41944000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 41860116 - 41859899
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  41860116 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 41860017  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  41860016 gttttttcacatggacagttgtacgtcgtaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 41859917  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  41859916 ttgcatcaaatgtggtct 41859899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 52682589 - 52682806
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  52682589 atgaaggcaatttccgttatctgtcgtctcatttgtaatgactattaacaagagtcagggtcagtcgttgaaacatgttcgtgtttatctaccgtctcct 52682688  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  52682689 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 52682788  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  52682789 ttgcatcaaatgtggtct 52682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 30388268 - 30388056
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  30388268 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcatggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 30388169  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||| ||| |||| ||||||  ||    
T  30388168 ttcacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacgacgacgatatcgatgttgca 30388069  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  30388068 tcaaatgtggtct 30388056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 21382511 - 21382723
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  21382511 gaaggcagtttccgatttctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 21382610  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| ||||||||||||||||||  ||||||||| |||| || |||||| |||||||| ||||| || ||| | || |||||||||||  ||    
T  21382611 ttcacatggacagttgtacgtcgcaatatcacaggttacttcgagggctggtttaaaaatattgattaatgacgacgacagtgatgataccgatgttgca 21382710  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  21382711 tcaaatgtggtct 21382723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 28389279 - 28389476
Alignment:
Q  29 tatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaatt 128  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| |  |||||||||||||||| |||||||||||| |||||||||||||||| ||    
T  28389279 tatctgtctcatttgcaatgactattaacaagagtcagggtcggtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagtt 28389378  T
Q  129 gtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||||||||||| |||||||||| |||| || ||| || |||||||| ||||| || |||| ||| |||||||||||  |||||||||| ||||    
T  28389379 gtacgtcgcaatatcacgggttacttcgaggggtggttttaaaatattgattaatgacgacgacgacgatgataccgatgttgcatcaaatgtggtct 28389476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 16908934 - 16909097
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||| |||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  16908934 tttccgatatctgtctcatttgcaatgactattaacaagagtcaaggtcggtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 16909033  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatga 185  Q
    |||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| |||||    
T  16909034 gacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatga 16909097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 52682214 - 52682326
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  52682214 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 52682313  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  52682314 gttttttcacatg 52682326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 29359441 - 29359311
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  29359441 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtgagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 29359342  T
Q  114 ttcacatggacaattgtacgtcgcaatatca 144  Q
    |||| ||||||| ||||||||||||||||||    
T  29359341 ttcatatggacagttgtacgtcgcaatatca 29359311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 19515369 - 19515271
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  19515369 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 19515271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 21581759 - 21581661
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  21581759 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 21581661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 37062400 - 37062483
Alignment:
Q  138 aatatcaagggttacttcaagggatga--tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaat 219  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||| | | ||||||| |||||||||||||||    
T  37062400 aatatcaagggttacttcaagggatatagtttaaagatattgatcaatgatgaggatgaccaagatactgatgtgacatcaaat 37062483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 4882243 - 4882107
Alignment:
Q  40 tttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcgcaa 139  Q
    |||||||||||||| ||||| || || ||||| || ||||||||||||||||| ||| | || || ||| | || || ||||| |||||||| || ||      
T  4882243 tttgcaatgactataaacaaaagtcaaggtcaatctttgaaacatgttggtgtatatttgccatcgcctatcttctctcatggtcaattgtatgtggctt 4882144  T
Q  140 tatcaagggttacttcaagggatgatttaaagatatt 176  Q
    | ||||||||||||||||| || | ||| ||||||||    
T  4882143 tgtcaagggttacttcaagagaaggtttgaagatatt 4882107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 9039315 - 9039409
Alignment:
Q  40 tttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgt 134  Q
    |||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||| | || || ||| | || || ||||| |||||||||||    
T  9039315 tttgcaatgactataaacaaaagccaaggtcaatctttgaaacatgttggtgtatatttgccatcgcctatcttctctcatggtcaattgtacgt 9039409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 31448554 - 31448485
Alignment:
Q  157 agggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||| ||||||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  31448554 aggggtgatttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 31448485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 53288321 - 53288382
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||||||||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  53288321 tttaaagatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 53288382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 2479487 - 2479423
Alignment:
Q  37 tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctacc 101  Q
    |||||||||||||| |||||||| ||||| || ||||||   |||||||||||||| ||||||||    
T  2479487 tcatttgcaatgacaattaacaaaagccaagggcagtcgcctaaacatgttggtgtatatctacc 2479423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 42347751 - 42347812
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||||||||||||| ||||| ||||||| |||  ||||||||||  |||||||||| ||||    
T  42347751 tttaaagatattgattaatgacgaggacgacgattataccgatgttgcatcaaatgtggtct 42347812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 29968198 - 29968258
Alignment:
Q  32 ctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgt 92  Q
    |||| |||||||||||||| |||||||| || || || |||||| | ||||||||||||||    
T  29968198 ctgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgt 29968258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 35432413 - 35432206
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  35432413 gaaggcagtttccgatatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 35432314  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| ||||||||||| |||| ||||||  ||    
T  35432313 ttcacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgaggacggcgatgatagcgatgttgca 35432214  T
Q  214 tcaaatgt 221  Q
    ||||||||    
T  35432213 tcaaatgt 35432206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 40605225 - 40605442
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  40605225 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagttagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 40605324  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  40605325 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 40605424  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  40605425 ttgcatcaaatgtggtct 40605442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 13908118 - 13908334
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||    
T  13908118 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtca-tcgttgaaacatgttggtgtttatctaccgtctcct 13908216  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| |||||    
T  13908217 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatg 13908316  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  13908317 ttgcatcaaatgtggtct 13908334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 26455763 - 26455980
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  26455763 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcggtcgttgaaacatgttggtgtttatctaccgtctcct 26455862  T
Q  109 gttttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatg 208  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||| ||| |||| |||||    
T  26455863 gttttttcacatggacagttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacgacgatgatatcgatg 26455962  T
Q  209 tgacatcaaatgtagtct 226  Q
    |  |||||||||| ||||    
T  26455963 ttgcatcaaatgtggtct 26455980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 5013806 - 5013593
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  5013806 gaaggcagtttccgatatctgtctcattttcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 5013707  T
Q  114 ttc-acatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgac 212  Q
    ||| |||||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||| ||| |||| ||||||  |    
T  5013706 ttctacatggacaattgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacgacgatgatatcgatgttgc 5013607  T
Q  213 atcaaatgtagtct 226  Q
    ||||||||| ||||    
T  5013606 atcaaatgtggtct 5013593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 207616 - 207820
Alignment:
Q  22 tttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatg 121  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||||||||||    
T  207616 tttccgatatctgtctcatttgcaatgattattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatg 207715  T
Q  122 gacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgt 221  Q
    |||||||||||||||||||||||  ||||||||| |||| || |||||| |||||||| ||||| || |||| ||| |||| ||||||  ||||||||||    
T  207716 gacaattgtacgtcgcaatatcacaggttacttcgaggggtggtttaaaaatattgattaatgacgacgacgacgatgatatcgatgttgcatcaaatgt 207815  T
Q  222 agtct 226  Q
     ||||    
T  207816 ggtct 207820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 1512634 - 1512846
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  1512634 gaaggcagtttccgatatttgtctcatttgcaatgactattaacaagagttagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 1512733  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| ||||||||   ||| || |||||||| |||| ||||||  ||    
T  1512734 ttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattgctgacgacgacggcgatgatatcgatgttgca 1512833  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  1512834 tcaaatgtggtct 1512846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 13907743 - 13907855
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  13907743 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctaccgtctcct 13907842  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  13907843 gttttttcacatg 13907855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 26455388 - 26455500
Alignment:
Q  12 atgaaggcaatttccgttatctgtc---tcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcct 108  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  26455388 atgaaggcaatttccgttatctgtcgtctcatttgcaatgactattaacaagagtcagggtcggtcgttgaaacatgttggtgtttatctaccgtctcct 26455487  T
Q  109 gttttttcacatg 121  Q
    |||||||||||||    
T  26455488 gttttttcacatg 26455500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 13905287 - 13905402
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  13905287 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 13905386  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  13905387 gcatcaagtgtggtct 13905402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 23455797 - 23455721
Alignment:
Q  150 tacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  23455797 tacttcaagggatggtttaaagatattgatcaatgatgaggatggccaagatactgatgtgacatcaaatgtagtct 23455721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 2300779 - 2300877
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||| | ||||||||| |||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||    
T  2300779 tttttcacatggacagttgtacatggcaatatcacgggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgt 2300877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 6123670 - 6123768
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  6123670 tttttcacatggacagttgtacgttgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 6123768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 184091 - 184206
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  184091 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 184190  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  184191 gcatcaagtgtggtct 184206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 976225 - 976110
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  976225 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 976126  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  976125 gcatcaagtgtggtct 976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 2449325 - 2449440
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||     
T  2449325 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgataccgatgtt 2449424  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  2449425 gcatcaagtgtggtct 2449440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 27997583 - 27997517
Alignment:
Q  160 gatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||  |||||||||| ||||    
T  27997583 gatggtttaaagatattgattaatgacgaggacggcgatgataccgatgtagcatcaaatgtggtct 27997517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 28098953 - 28098887
Alignment:
Q  160 gatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||  |||||||||| ||||    
T  28098953 gatggtttaaagatattgattaatgacgaggacggcgatgataccgatgtagcatcaaatgtggtct 28098887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 42109565 - 42109496
Alignment:
Q  157 agggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||| ||||||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  42109565 aggggtgatttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 42109496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 31226738 - 31226837
Alignment:
Q  127 ttgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||  |||||||||||||| ||||||| ||| |  ||  |||||||||| || |||||  |||| ||||||||  |||||||||||||||| ||||    
T  31226738 ttgtacgctgcaatatcaagggtcacttcaaaggaagggttgcagatattgataaacgatgaaaacggtgaagatactaatgtgacatcaaatgtggtct 31226837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 19821916 - 19821977
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  19821916 tttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 19821977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 19842137 - 19842198
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||| |||||||| ||||| |||||||||||  ||||||||||  |||||||||| ||||    
T  19842137 tttaaaaatattgattaatgacgaggacggcgattataccgatgttgcatcaaatgtggtct 19842198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 33402259 - 33402123
Alignment:
Q  40 tttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgtacgtcgcaa 139  Q
    |||||||||||||| ||||| ||  | ||||| || |||||||||||||| || ||| | || || ||| | || || ||||| |||||||| || ||      
T  33402259 tttgcaatgactataaacaaaagttaaggtcaatctttgaaacatgttggcgtatatttgccatcgcctatcttctctcatggtcaattgtatgtggctt 33402160  T
Q  140 tatcaagggttacttcaagggatgatttaaagatatt 176  Q
    | ||||||||||||||||| || | ||| ||||||||    
T  33402159 tgtcaagggttacttcaagagaaggtttgaagatatt 33402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 52155 - 51943
Alignment:
Q  14 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgtttt 113  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||| ||||    
T  52155 gaaggcagtttccgatttctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctatttt 52056  T
Q  114 ttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgaca 213  Q
    |||||||||||| ||||||||||||||||||  ||||||||| |||| || |||||| |||||||| | ||| || ||| |||| |||| ||||||  ||    
T  52055 ttcacatggacagttgtacgtcgcaatatcacaggttacttcgaggggtggtttaaaaatattgattattgacgacgacagcgatgatatcgatgttgca 51956  T
Q  214 tcaaatgtagtct 226  Q
    |||||||| ||||    
T  51955 tcaaatgtggtct 51943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 40586 - 40471
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtg 210  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||| |||| || ||||||||||||||| ||||| || |||||||| |||| ||||||     
T  40586 tttttcacatggacagttgtacattgcaatatcacaggttacttcgaggggtggtttaaagatattgattaatgacgacgacggcgatgatatcgatgtt 40487  T
Q  211 acatcaaatgtagtct 226  Q
     |||||| ||| ||||    
T  40486 gcatcaagtgtggtct 40471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 49213 - 49121
Alignment:
Q  134 tcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||||||||| |||||||||| || | || |||||| |||||||| ||||| || ||| |||| |||| ||||||  |||||||||| ||||    
T  49213 tcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacagcgatgatatcgatgttgcatcaaatgtggtct 49121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 3356 - 3454
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  3356 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 3454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 13268 - 13366
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  13268 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 13366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 25713 - 25615
Alignment:
Q  111 tttttcacatggacaattgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgt 209  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||| || |||||||| |||||||||||    
T  25713 tttttcacatggacagttgtacgtcgcaatatcacgggttacttcgaggggtggtttaaaaatattgattaatgacgacgacggcgatgataccgatgt 25615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 45550 - 45649
Alignment:
Q  127 ttgtacgtcgcaatatcaagggttacttcaagggatgatttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    |||||||||||||||||| |||||||||| || | || |||||| |||||||| ||||| || |||||||| |||| ||||||  |||||||||| ||||    
T  45550 ttgtacgtcgcaatatcacgggttacttcgagaggtggtttaaaaatattgattaatgacgacgacggcgatgatatcgatgttgcatcaaatgtggtct 45649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 1982 - 2043
Alignment:
Q  165 tttaaagatattgatcaatgatgaggacggcgaagataccgatgtgacatcaaatgtagtct 226  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||  |||||||||| ||||    
T  1982 tttaaagatattgattaatgacgaggacggcgatgataccgatgttgcatcaaatgtggtct 2043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 104593 - 104705
Alignment:
Q  19 caatttccgttatctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcac 118  Q
    |||||||| ||  |||| |||||||||||||| |||||||| || || || |||||| | |||||||||||||| ||||||||  | ||||| ||||| |    
T  104593 caatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctc 104692  T
Q  119 atggacaattgta 131  Q
    | ||||| |||||    
T  104693 acggacagttgta 104705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 127255 - 127324
Alignment:
Q  32 ctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctacc 101  Q
    |||| |||||||||||||| |||||||| || || || |||||| | |||||||||| ||| ||||||||    
T  127255 ctgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttgatgtatatctacc 127324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 71459 - 71360
Alignment:
Q  32 ctgtctcatttgcaatgactattaacaagagccagggtcagtcgttgaaacatgttggtgtctatctaccgtctcctgttttttcacatggacaattgta 131  Q
    |||| |||||||||||||| |||||||| || || || |||||| | |||||||||| ||| ||||||||  | ||||| ||||| || ||||| |||||    
T  71459 ctgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttgatgtatatctaccaacacctgtattttctcacggacagttgta 71360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University