View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18489_low_32 (Length: 209)

Name: NF18489_low_32
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18489_low_32
NF18489_low_32
[»] chr2 (1 HSPs)
chr2 (13-191)||(9041950-9042125)
[»] chr3 (1 HSPs)
chr3 (13-190)||(41171083-41171260)
[»] chr6 (2 HSPs)
chr6 (13-191)||(8962601-8962779)
chr6 (13-191)||(8956578-8956756)
[»] chr8 (2 HSPs)
chr8 (13-190)||(9811893-9812070)
chr8 (153-191)||(9522552-9522590)
[»] chr1 (3 HSPs)
chr1 (13-150)||(1862601-1862738)
chr1 (13-150)||(1871779-1871916)
chr1 (64-175)||(34820731-34820842)
[»] chr4 (4 HSPs)
chr4 (13-116)||(34760221-34760324)
chr4 (48-190)||(36753299-36753440)
chr4 (18-190)||(39717896-39718057)
chr4 (161-191)||(34759940-34759970)
[»] chr7 (2 HSPs)
chr7 (13-104)||(37093066-37093157)
chr7 (33-189)||(38159560-38159716)
[»] chr5 (2 HSPs)
chr5 (101-167)||(16639587-16639653)
chr5 (46-89)||(14532880-14532923)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 9042125 - 9041950
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||   ||||||||    
T  9042125 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctgtctcccaacataactttataccaatcaac---gtttgaat 9042029  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaac 191  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9042028 ctcagcatgtaaaatatttgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaac 9041950  T

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Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 41171260 - 41171083
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||  ||| |||| ||||||    
T  41171260 tcatcaccaactgtaccacatgaagagagtcggagaaacacataagctttctataacctgttttccaacataactttataccagtcaaaaacgcttgaat 41171161  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaa 190  Q
    ||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  41171160 ctcagcatgtaaaatattcaagatccccatactaccaaagaaaccacgaaggaaacttccatcgtgcttgcgtattaa 41171083  T

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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 8962601 - 8962779
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||| ||||| ||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| |  |||||||| ||||||    
T  8962601 tcatcagcaactgtactacatgaagagagtcggagaaacatataagctttctataacttgtctcccaacataactttatactattcaacaacgcttgaat 8962700  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaac 191  Q
    || || |||||||||||| ||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  8962701 ctaagtatgtaaaatatttgagatccacacgctaccaaagaaaccaggaaggaatcttccatcgtgcttacgtattaac 8962779  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 8956756 - 8956578
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||| ||||| ||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| |  | |||||| ||||||    
T  8956756 tcatcagcaactgtactacatgaagagagtcggagaaacatataagctttctataacttgtctcccaacataactttatactattcgacaacgcttgaat 8956657  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaac 191  Q
    || || |||||||||||| ||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  8956656 ctaagtatgtaaaatatttgagatccacacgctaccaaagaaaccaggaaggaatcttccatcgtgcttacgtattaac 8956578  T

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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 9811893 - 9812070
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||| ||||| ||||| ||||| |||||| |||||||||||||| ||||||| ||||  || |||||||||||||| |  |  |||||||||||||||    
T  9811893 tcatcatcaactgtaccatatgaagagagtcaaagaaacacataagttttctatgacctgccttccaacataactttaaataagtcaacaacgtttgaat 9811992  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaa 190  Q
    || || |||||  ||||| ||||||||||| | |||||| |||||| |||||||||||||||||||||||||||||||    
T  9811993 cttagtatgtaggatatttgagatccccacacaaccaaagaaaccaagaaggaaacttccatcgtgcttacgtattaa 9812070  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 9522590 - 9522552
Alignment:
Q  153 aaaccacgaaggaaacttccatcgtgcttacgtattaac 191  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9522590 aaaccacgaaggaaacttccatcgtgcttacatattaac 9522552  T

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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 1862601 - 1862738
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| |||| |||| |||| || |||    
T  1862601 tcatcaccaactgtaccatatgaagagagtcggagaaacacataagctttctataacatgtctcccaacataactttagaccagccaataacgcttaaat 1862700  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaa 150  Q
    || | ||| |||||||||||||||||||||||||||||    
T  1862701 ctaaacatataaaatattcgagatccccacgctaccaa 1862738  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 1871779 - 1871916
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||||||  | ||||||||||| ||||||| |||||||||||| ||||||||||| | |||||||||||||||||| || | |||| |||| || |||    
T  1871779 tcatcaccagttgtaccacatgaagagagtcggagaaacacataaactttctataacttgtctcccaacataactttagactagccaataacgcttaaat 1871878  T
Q  113 ctcagcatgtaaaatattcgagatccccacgctaccaa 150  Q
    || | ||  |||||||||||||||||||||||||||||    
T  1871879 ctaaacaaataaaatattcgagatccccacgctaccaa 1871916  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 34820731 - 34820842
Alignment:
Q  64 tataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaag 163  Q
    |||||||| |||||||||||||||||||||||| ||||||   |||||||||||||||||  |||||| |||||||  | |||| ||| ||| || ||||    
T  34820731 tataacctgtctcccaacataactttataccaatcaacaaaacttgaatctcagcatgtaggatattcaagatccctccactactaaaaaaatcaagaag 34820830  T
Q  164 gaaacttccatc 175  Q
    |||||| |||||    
T  34820831 gaaactcccatc 34820842  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 34760324 - 34760221
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 112  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||||  |||| ||| ||||||    
T  34760324 tcatcaccaactgtaccacatgaagagagtcggagaaacacataagctttctataatctgcctcccaacataactttataccagtcaactacgcttgaat 34760225  T
Q  113 ctca 116  Q
    ||||    
T  34760224 ctca 34760221  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 36753440 - 36753299
Alignment:
Q  48 aaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaatattcgagatccccacgctac 147  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||  | | ||   |||||||||| ||||||  ||||||||||||||||| ||||    
T  36753440 aaacacataagctttctataacctacctcccaacataactt-acaccagtcgaaaatacttgaatctcaacatgtaggatattcgagatccccacactac 36753342  T
Q  148 caaataaaccacgaaggaaacttccatcgtgcttacgtattaa 190  Q
    |||| |||||| |||| |||||||| || |||| || ||||||    
T  36753341 caaagaaaccaagaagaaaacttccttcatgctaacatattaa 36753299  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39717896 - 39718057
Alignment:
Q  18 accaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcag 117  Q
    ||||||| ||| ||||||| ||||||  ||||||| |||| ||||||||||| |  || | |||||||||||| || |  |||||||  ||||||||||     
T  39717896 accaactatactacatgaagagagtcagagaaacatataaactttctataacatgcctactaacataactttacacgagtcaacaacacttgaatctcaa 39717995  T
Q  118 catgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaa 190  Q
    || ||| |||||| |||||           |||| |||||| ||||||||||||||| |||||||||||||||    
T  39717996 cacgtacaatattagagat-----------caaacaaaccaagaaggaaacttccattgtgcttacgtattaa 39718057  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 191
Target Start/End: Complemental strand, 34759970 - 34759940
Alignment:
Q  161 aaggaaacttccatcgtgcttacgtattaac 191  Q
    |||||||||||||||||||||||||||||||    
T  34759970 aaggaaacttccatcgtgcttacgtattaac 34759940  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 37093066 - 37093157
Alignment:
Q  13 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaac 104  Q
    ||||||| |||| ||||||||||| ||||||| |||||||    |||||||||||||||   ||| |||||||||||||||||| |||||||    
T  37093066 tcatcactaactgtaccacatgaagagagtcggagaaacatgcgagctttctataacctccttccgaacataactttataccaatcaacaac 37093157  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 38159560 - 38159716
Alignment:
Q  33 tgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaatattcg 132  Q
    |||| |||||||||| | || || |||||| |||| |||   |||||||| || |||||||||  ||| |  | |||||| ||||||||||  ||||| |    
T  38159560 tgaagagagtcgaagtagcatatgagctttttatatcctgcatcccaacacaattttataccagtcaatagagcttgaatttcagcatgtatgatatttg 38159659  T
Q  133 agatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtatta 189  Q
    |||||||  | |||||||||||| ||    | |||||||||||||||||||| ||||    
T  38159660 agatccctgcactaccaaataaatcaacttgaaaacttccatcgtgcttacgaatta 38159716  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 16639587 - 16639653
Alignment:
Q  101 caacgtttgaatctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaa 167  Q
    ||||| |||||||||| ||||||  ||||||||||||||||| |||||||| |||||| ||||||||    
T  16639587 caacgcttgaatctcaccatgtaggatattcgagatccccacactaccaaagaaaccaagaaggaaa 16639653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 14532923 - 14532880
Alignment:
Q  46 agaaacacataagctttctataacctatctcccaacataacttt 89  Q
    ||||||||||||| ||||||||||||| || |||||||||||||    
T  14532923 agaaacacataagttttctataacctaccttccaacataacttt 14532880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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