View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_4 (Length: 576)
Name: NF18489_low_4
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 558
Target Start/End: Original strand, 49942375 - 49942917
Alignment:
| Q |
17 |
cacttgccctccctttagaccatgtaactggaatgtctaggatcctttcaaatagctgcatagaactcaagccagacataaactgtttaagcatcc-gta |
115 |
Q |
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| T |
49942375 |
cacttgccctccctttagaccatgtaactggaatgtctaggatcctttcaaatagctgcatagcactcaagccagacataaactgtttaagcatcccgta |
49942474 |
T |
|
| Q |
116 |
caggatatatggcaaaatagaaagttgnnnnnnntttggaactttaagttactatataccggaacataaagattgtcaactttcaaattagtatgccatt |
215 |
Q |
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| T |
49942475 |
caggatatatggcaaaatagaaagttgaaaaaaatttggaactttaagttactatataccggaacataaagattgtcaactttcaaattagtatgccatt |
49942574 |
T |
|
| Q |
216 |
tctcctcagtagtgtcaacaaaaatatttgcagacaaccaaccaccatctttgcatgtaacatctgatctccacggtttacaatttccactcatctgtac |
315 |
Q |
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| T |
49942575 |
tctcctcagtagtgtcaacaaaaatatttgcggacaaccaaccaccatctttgcatgtaacatctgatctccacggtttacaatttccactcatctgtac |
49942674 |
T |
|
| Q |
316 |
attcatatggctgtagttgttatgaaacttcacatggccattgacattctccatctccctgaaagtaaggcatatagaacatataaattcatgcagatta |
415 |
Q |
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| T |
49942675 |
attcatatggctgtagttgttatgaaacttcacatggccattgacattctccatctccctgaaagtaagacatatagaacatataaattcatgcagatta |
49942774 |
T |
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| Q |
416 |
ccatttttcaaataagatttcgggttccaaatgtcgaacatagaagtatctaactaactctatcaaaaaagaagtatctaattagtatttacaagttacg |
515 |
Q |
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| T |
49942775 |
ccatttttcaaataagatttcgggttccaaatgtcgaacatagaagtatctaactacttctatcaaaaaagaagtatctaattagtatttacaagttacg |
49942874 |
T |
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| Q |
516 |
actactattacttcacaccccagccttaggattaaactcgata |
558 |
Q |
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| T |
49942875 |
actactattacttcacaccccagccttaggattaaactcgata |
49942917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 382
Target Start/End: Complemental strand, 1905397 - 1905198
Alignment:
| Q |
183 |
aaagattgtcaactttcaaattagtatgccatttctcctcagtagtgtcaacaaaaatatttgcagacaaccaaccaccatctttgcatgtaacatctga |
282 |
Q |
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|||||||||||| |||||| || |||||| || | ||| || |||||||||||| ||| |||||||||| || || |||| | || || |||||| |
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| T |
1905397 |
aaagattgtcaattttcaagttgacatgccaattttgttcaataatgtcaacaaaaacattaacagacaaccagcccccgtcttcggatagaatatctga |
1905298 |
T |
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| Q |
283 |
tctccacggtttacaatttccactcatctgtacattcatatggctgtagttgttatgaaacttcacatggccattgacattctccatctccctgaaagta |
382 |
Q |
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| T |
1905297 |
cctccaagtattacaatttccacttagatgcacatgtatgcgactatagtggttttgtaactttacatgcccattgacattctccatctccctggaagta |
1905198 |
T |
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