View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_6 (Length: 562)
Name: NF18489_low_6
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 141 - 549
Target Start/End: Complemental strand, 6468048 - 6467639
Alignment:
| Q |
141 |
tctcattttatctacggaataaaaatttattgtatgtaatattaattaaagggtcacacttacaaaatcaagaaataaagatttgcaaatcaaaatcttc |
240 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6468048 |
tctcattttatctacggaaaaaaaatt-attgtatgtaatattaattaaagggtcacacttacaaaatcaagaaataaagatttgcaaatcaaaatcttc |
6467950 |
T |
|
| Q |
241 |
cactagtggccttacggcctcctacaaaaactcttattttcctaaattgatttgctatgattttattttcatttatttcaatttcaccgtagaaacttta |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6467949 |
cactagtggccttacggcctcctacaaaaactcttattttcctaaattgatttgctatgattttattttcatttatttcaatttcaccgcagaaacttta |
6467850 |
T |
|
| Q |
341 |
aataatctcacaactcttataaaaccctcccctgactc--aaagaaataagaccctattctctaaccattgatctcaatttcaacccattgctttgtttg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6467849 |
aataatctcacaactcttataaaaccctcccctgactcagagagaaataagaccctattctctaaccattgatctcaatttcaacccattgctttgtttg |
6467750 |
T |
|
| Q |
439 |
aaacttgtagattcataatgtatttccacagagtgaaatctaacatggttagtgccaaactatcttgacattctcactttcattttctttgaatattatc |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6467749 |
aaacttgtagattcataatgtatttccacagagtgaaatctaacatggttagtgccaaactatcttgacattctcactttcattttctttgaatattatc |
6467650 |
T |
|
| Q |
539 |
tccttttatat |
549 |
Q |
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||||||||||| |
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| T |
6467649 |
tccttttatat |
6467639 |
T |
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