View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18489_low_8 (Length: 541)
Name: NF18489_low_8
Description: NF18489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18489_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 24529953 - 24529690
Alignment:
| Q |
16 |
agagatgagcaagatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattag |
115 |
Q |
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| T |
24529953 |
agagatgagcaagatagttggagacaaggagctgcaccaaaaatatatagatgactttgttgattatgtggagctacatattcttacctctaagcattag |
24529854 |
T |
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| Q |
116 |
cactaattaggtctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtcccttggaatttcgatgttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24529853 |
cactaattaggtctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtccattggaatttcgatgttc |
24529754 |
T |
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| Q |
216 |
atttgcta-tttctttttgctatcatctaggatagactcaaagcattagcacaaaggttgtttt |
278 |
Q |
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| T |
24529753 |
atttgctattttatttttgctatcatctaggatagactcaaagtattagcacaaaggttttttt |
24529690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 259 - 433
Target Start/End: Complemental strand, 24529668 - 24529494
Alignment:
| Q |
259 |
attagcacaaaggttgttttgttgtcattgatgtaatgtcatcctcgacagattttatagtaatttttgtgttggtctttttatgtgatgcattattaaa |
358 |
Q |
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| T |
24529668 |
attagcacaaaggttgttttgttgtcattgatgtaatgtcatcctcgacagattttatagtaatttttgtgttggtctttttatgtgatgcattattaaa |
24529569 |
T |
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| Q |
359 |
atagaaattgatgtttgttactttgctccatgagttgatttggttgtgtttgaaacaagtattatattgataggt |
433 |
Q |
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| T |
24529568 |
atagaaattgatgtttgttactttgctccatgacttgatttggttgtgtttgaaacaagtattgtattgataggt |
24529494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 24543930 - 24544033
Alignment:
| Q |
16 |
agagatgagcaagatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattag |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||| | || ||||||||||| |
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| T |
24543930 |
agagatgagcaagatatttggagacaaggagctgcaccaaaagtatttggatgactttgttgattatatggagctccatatctctgccactaagcattag |
24544029 |
T |
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| Q |
116 |
cact |
119 |
Q |
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|||| |
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| T |
24544030 |
cact |
24544033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 437 - 523
Target Start/End: Complemental strand, 24528292 - 24528206
Alignment:
| Q |
437 |
cttgattcaaatctatagtctcatagttgtgtcggtgaaattctatgatatttatcacttcgtttagaaaaaattgaaagcattttt |
523 |
Q |
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|||||||||||| |||||||||| ||||||||| ||| || | || ||||||||||||||||||||||||||| ||||||||||| |
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| T |
24528292 |
cttgattcaaatatatagtctcacagttgtgtcattgagtttttgtggtatttatcacttcgtttagaaaaaattaaaagcattttt |
24528206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 523
Target Start/End: Complemental strand, 24529468 - 24529423
Alignment:
| Q |
478 |
tctatgatatttatcacttcgtttagaaaaaattgaaagcattttt |
523 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24529468 |
tctataatatttatcacttcgtttagaaaaaattgaaagcattttt |
24529423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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