View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1848_high_3 (Length: 348)
Name: NF1848_high_3
Description: NF1848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1848_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 34038939 - 34039130
Alignment:
| Q |
1 |
acatagaattatttgaatcttctgagaatgttccaatggatgttgttgaatcactattagtttccttaaccatccacttcatgtttcttgcactatcatc |
100 |
Q |
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| T |
34038939 |
acatagaattatttgaatcttctgagaatgttccaatggatgttgttgaatcactattagttttcttaaccatccacttcatgtttcttgcactatcatc |
34039038 |
T |
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| Q |
101 |
acccattattcccttcacattcatttcaagaagaaata--nnnnnnngatttaagaaagaaatgaaacaagccttcaatgaaaaagcataga |
190 |
Q |
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| T |
34039039 |
acccattattcccttcacattcatttcaagaagaaatatttttttttgtattaagaaagaaatgaaacaagccttcaatgaaaaagcataga |
34039130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 34039130 - 34039248
Alignment:
| Q |
215 |
aatatgtcgaaacttatatatataagaataattggattggataacattgaccaattatatcctagattgtattataaatttttgtcactatccgaaaatg |
314 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34039130 |
aatatgttgaagcttatatatataagaataattggattggataacattgaccaattatatcctagattgtattataaatttttgtcactatccgaaaatg |
34039229 |
T |
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| Q |
315 |
ttatatatggtgggaaatg |
333 |
Q |
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||||||||||||||||||| |
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| T |
34039230 |
ttatatatggtgggaaatg |
34039248 |
T |
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