View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1848_high_6 (Length: 248)

Name: NF1848_high_6
Description: NF1848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1848_high_6
NF1848_high_6
[»] chr5 (9 HSPs)
chr5 (1-233)||(4888424-4888656)
chr5 (1-233)||(26364877-26365109)
chr5 (1-233)||(38974431-38974654)
chr5 (11-233)||(41082432-41082654)
chr5 (14-91)||(22471566-22471643)
chr5 (5-63)||(26365732-26365790)
chr5 (5-63)||(38973750-38973808)
chr5 (5-61)||(4887732-4887786)
chr5 (5-63)||(38163390-38163448)
[»] chr4 (21 HSPs)
chr4 (1-233)||(38829546-38829778)
chr4 (1-233)||(1140105-1140336)
chr4 (1-233)||(51543949-51544178)
chr4 (4-233)||(31760911-31761140)
chr4 (1-233)||(29776342-29776574)
chr4 (1-208)||(8143319-8143526)
chr4 (1-233)||(33166913-33167144)
chr4 (108-232)||(6032831-6032955)
chr4 (108-233)||(53061385-53061510)
chr4 (5-88)||(53061544-53061629)
chr4 (1-63)||(44271645-44271707)
chr4 (4-56)||(8671714-8671766)
chr4 (1-57)||(55317770-55317826)
chr4 (5-63)||(31761518-31761576)
chr4 (5-63)||(53060698-53060756)
chr4 (1-63)||(6033578-6033643)
chr4 (5-63)||(8144092-8144150)
chr4 (5-63)||(33167778-33167836)
chr4 (5-63)||(51543271-51543329)
chr4 (6-62)||(29775649-29775705)
chr4 (1-41)||(14816540-14816580)
[»] chr1 (12 HSPs)
chr1 (1-233)||(49696398-49696630)
chr1 (1-233)||(50504284-50504518)
chr1 (1-233)||(7057860-7058092)
chr1 (1-233)||(50876667-50876899)
chr1 (1-233)||(4475036-4475268)
chr1 (4-233)||(51462526-51462737)
chr1 (5-63)||(49695704-49695762)
chr1 (5-63)||(4475914-4475972)
chr1 (5-63)||(7057262-7057320)
chr1 (5-63)||(21259712-21259770)
chr1 (9-63)||(50877534-50877588)
chr1 (5-58)||(39277306-39277359)
[»] scaffold0854 (2 HSPs)
scaffold0854 (1-233)||(2191-2423)
scaffold0854 (5-60)||(3036-3091)
[»] chr8 (11 HSPs)
chr8 (1-233)||(8952372-8952604)
chr8 (1-232)||(42074111-42074333)
chr8 (1-233)||(12279124-12279355)
chr8 (1-233)||(8347897-8348129)
chr8 (6-233)||(305536-305763)
chr8 (112-233)||(45308574-45308695)
chr8 (5-63)||(45309332-45309390)
chr8 (5-63)||(8951663-8951721)
chr8 (5-63)||(12280005-12280063)
chr8 (5-59)||(42074955-42075009)
chr8 (5-41)||(8348695-8348731)
[»] chr3 (26 HSPs)
chr3 (1-233)||(33446117-33446349)
chr3 (1-232)||(55227602-55227833)
chr3 (1-233)||(40989129-40989362)
chr3 (14-233)||(2181598-2181817)
chr3 (1-233)||(46985168-46985399)
chr3 (1-233)||(55093436-55093666)
chr3 (1-232)||(17257616-17257847)
chr3 (1-233)||(5636222-5636454)
chr3 (1-233)||(54476811-54477043)
chr3 (1-233)||(36316117-36316349)
chr3 (1-233)||(51225962-51226193)
chr3 (1-222)||(50381119-50381336)
chr3 (108-233)||(33944093-33944218)
chr3 (1-159)||(50763800-50763958)
chr3 (142-233)||(32771038-32771129)
chr3 (1-71)||(32770937-32771007)
chr3 (5-63)||(36316993-36317051)
chr3 (5-63)||(54476393-54476451)
chr3 (6-63)||(49002008-49002065)
chr3 (5-63)||(33446941-33446999)
chr3 (5-63)||(5635690-5635748)
chr3 (5-63)||(32771765-32771823)
chr3 (5-63)||(51225268-51225326)
chr3 (1-63)||(55094288-55094350)
chr3 (7-63)||(17256924-17256980)
chr3 (12-63)||(35494852-35494903)
[»] chr2 (14 HSPs)
chr2 (1-233)||(44077338-44077570)
chr2 (1-233)||(21632811-21633043)
chr2 (1-233)||(28719645-28719878)
chr2 (1-233)||(23686305-23686537)
chr2 (1-233)||(23049306-23049536)
chr2 (1-220)||(43891168-43891386)
chr2 (1-233)||(16144421-16144653)
chr2 (5-63)||(44078193-44078249)
chr2 (5-63)||(11364170-11364228)
chr2 (5-63)||(21632134-21632191)
chr2 (5-63)||(43890448-43890506)
chr2 (5-57)||(51953-52003)
chr2 (5-56)||(23686165-23686216)
chr2 (5-63)||(23048625-23048683)
[»] chr7 (5 HSPs)
chr7 (4-233)||(30504686-30504915)
chr7 (1-233)||(24278412-24278643)
chr7 (5-63)||(24279279-24279337)
chr7 (5-63)||(42437684-42437742)
chr7 (6-63)||(30503994-30504051)
[»] scaffold0286 (2 HSPs)
scaffold0286 (1-233)||(20982-21212)
scaffold0286 (5-63)||(20387-20442)
[»] chr6 (12 HSPs)
chr6 (1-233)||(2172829-2173059)
chr6 (1-233)||(22516284-22516516)
chr6 (1-233)||(4793313-4793543)
chr6 (1-233)||(11623846-11624072)
chr6 (121-233)||(29874090-29874202)
chr6 (142-233)||(2017457-2017536)
chr6 (5-63)||(2018184-2018242)
chr6 (5-63)||(29873389-29873447)
chr6 (5-63)||(2173598-2173654)
chr6 (5-63)||(4792621-4792679)
chr6 (5-63)||(11623508-11623566)
chr6 (5-63)||(22517143-22517201)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-41)||(23131-23171)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4888656 - 4888424
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  4888656 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 4888557  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4888556 gaaaaatgatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacaaaagtttcgtttttatcaaaagaaaaatgagcatatca 4888457  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  4888456 catgcactttgacatatataaagggcacaaaac 4888424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26364877 - 26365109
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||| |||||||             
T  26364877 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaatttgctccattgacagaagcatgaaaaaagtg 26364976  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26364977 gaaaaatgatgagtagctcaatgcaagcacgataatgaaataatgttttattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 26365076  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  26365077 catgcactttgacatatataaagggcacaaaac 26365109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38974654 - 38974431
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||| |||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||| |||||||             
T  38974654 aattgtgttccaaaatctgattatagcccttcttcctctcatcactctctaaaacactaattcaagaacctgctccattgacagaagcatggaaaaag-- 38974557  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38974556 -------gatgagtagctcagtgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 38974464  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  38974463 catgcactttgacatatataaagggcacaaaac 38974431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 41082432 - 41082654
Alignment:
Q  11 caaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnnnnnnnnngat 110  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||| |||||||||||||| |||||||                 ||    
T  41082432 caaaatctgattctagctattcttcctctcatctctctctaaaacactaattcaagaatctgctccattgacagaagcatggaaaaagtggaaaatgaat 41082531  T
Q  111 gagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcacttt 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41082532 gagtagctcaatgcaagcacgataataaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatcacatgcacttt 41082631  T
Q  211 gacatatataaagggcacaaaac 233  Q
    |||||| ||||||||||||||||    
T  41082632 gacatacataaagggcacaaaac 41082654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 22471566 - 22471643
Alignment:
Q  14 aatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatg 91  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  22471566 aatctgattctagctcttcttcctctcatctctctctaaaacattgattcaagaacctgctccattgacataagcatg 22471643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 26365790 - 26365732
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||||||||| |||  |||||| |||||||||||||    
T  26365790 gtgttccaaaatctgattctccctcttcttcctttcatctctctccaaaacactgattc 26365732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 38973750 - 38973808
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||| |||||||||  |||||||| |||||||||||    
T  38973750 gtgttccaaaatctgattctccctcttattcctctcatctctctctataacactgattc 38973808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 4887732 - 4887786
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgat 61  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||| ||||    
T  4887732 gtgttccaaaatctgattctccctcttcttcctctca--tctctctaaaacattgat 4887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 38163448 - 38163390
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||   |||||||||| |||  ||||||||||| ||||||||    
T  38163448 gtgttccaaaatctgattctccatcttcttcctttcatctctctctaaaaaactgattc 38163390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38829778 - 38829546
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||| ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  38829778 aattttgttccaaaatctgattttagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 38829679  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38829678 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 38829579  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  38829578 catgcactttgacatatataaagggcacaaaac 38829546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1140336 - 1140105
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||             
T  1140336 aattgtgttctaaaatctgattctaactcttcttcctctcatctctctctaaaacactgattcaataacctgctccattgacaaaagcatggaaaagtgg 1140237  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1140236 aaaaag-gatgagtagctcaatgcaagcacgataatgaaataatgtcctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgaacatatca 1140138  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  1140137 catgcactttgacatatataaagggcacaaaac 1140105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 51544178 - 51543949
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||             
T  51544178 aattgtgttccaaattctgattctagctcttcttcctctcatttctctataaaacactgattcaagaacctgctccattgatagaagcatggaaaaagga 51544079  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  51544078 tatat---atgagtagctcaatgcaagcacgataatgaaataatgttctattgaatgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 51543982  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||| |||||||    
T  51543981 catgcactttgacatatataaagggtacaaaac 51543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 31760911 - 31761140
Alignment:
Q  4 tgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnnnnn 103  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||||||||| |||||||                
T  31760911 tgtgttccacaatctgattctagctcttcttcctctcatctctctctaaaacactaattcaagaacttgctccattgacagaagcatggaaaaagtggaa 31761010  T
Q  104 nnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacat 203  Q
        ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31761011 aaaggatgagtagctcaatgcaagcgcgataatgaaataatgttctatttaacgaaacgaaagtttcatttttatcaaaagaaaaaggagcatatcacat 31761110  T
Q  204 gcactttgacatatataaagggcacaaaac 233  Q
    |||| |||||||| ||||||||||||||||    
T  31761111 gcaccttgacatacataaagggcacaaaac 31761140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29776574 - 29776342
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||| ||||||              
T  29776574 aattgtgttccaaaatctgatcatagctcttcttcctctcatctctctctaaaacactgattcaagaacttgctccactgacagaagcattgaaaaagtg 29776475  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  29776474 gaaaaaggatgactagctcaatgcaagcacgataatgaaataatgttctattgaacgaaatgaatgtttcgtttttatcaaaagaaaaaagagcatatca 29776375  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||| ||| ||||||    
T  29776374 catgcactttgacatatataaatggcgcaaaac 29776342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8143319 - 8143526
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||| ||| |||             
T  8143319 aattgtattccaaaatctgattctagctcttcttcctctcatctctctcaaaaacactgattcaagaacctgctccattgacagaagtatgaaaaaagtg 8143418  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8143419 gaaaaaggatgagtagctcaatgcaagcacgatattgaaataatattctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 8143518  T
Q  201 catgcact 208  Q
    ||||||||    
T  8143519 catgcact 8143526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 33166913 - 33167144
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||| |||||||| | || ||||             
T  33166913 aattgtgttccaaaatctgattgtatctcttcttcctctcatctctctctaaaacactgattcaagaacctggtccattgatagaaacatggaaaaagtg 33167012  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||| || ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  33167013 gaaaaatgattagcagctcaatgcaag-acgataataaaataatgttctatttaacgaaacgaaagtttcatttttatcaaaagaaaaaagagtatatca 33167111  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  33167112 catgcactttgacatatataaagggcacaaaac 33167144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 6032831 - 6032955
Alignment:
Q  108 gatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcac 207  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  6032831 gatgagtagctcaatgcaagtacgataatgaaataatgttctattgaatgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatcacatgcat 6032930  T
Q  208 tttgacatatataaagggcacaaaa 232  Q
    |||||||||||||||||||||||||    
T  6032931 tttgacatatataaagggcacaaaa 6032955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 53061510 - 53061385
Alignment:
Q  108 gatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcac 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  53061510 gatgagcagctcaatgcaagcacgataatgaaataatgttctattgaacaaaacgaaagtttcatttttatcaaaagaaaaaggagcatatcacatgcac 53061411  T
Q  208 tttgacatatataaagggcacaaaac 233  Q
    ||||||||| ||||||||||||||||    
T  53061410 tttgacatacataaagggcacaaaac 53061385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 53061629 - 53061544
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaat---tctctctaaaacactgattcaagaacctgctccattgacaaaagc 88  Q
    ||||||||||||||||||||  ||||||||||| | |||   |||||||||||||||||||||||||||||||||||||||| ||||    
T  53061629 gtgttccaaaatctgattctccctcttcttcct-ttaatctctctctctaaaacactgattcaagaacctgctccattgacagaagc 53061544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44271707 - 44271645
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||| ||||||    
T  44271707 aattgtgttccaaaatctgattctagcccttcttcttctcatctctctctaaaacagtgattc 44271645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 8671766 - 8671714
Alignment:
Q  4 tgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaaca 56  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||||    
T  8671766 tgtgttccaaaatctgattctaactcttcttcctctcatctctctctaaaaca 8671714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55317826 - 55317770
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacac 57  Q
    ||||||||||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  55317826 aattgtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacac 55317770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 31761576 - 31761518
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||||||||||||   ||||||||||||||||||||    
T  31761576 gtgttccaaaatctgattctccctcttcttcctctcgtctctctctaaaacactgattc 31761518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 53060698 - 53060756
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||| ||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  53060698 gtgttacaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 53060756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6033643 - 6033578
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttctt---cctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||||||  ||||||||   |||||||  ||||||||||||||||||||    
T  6033643 aattgtgttccaaaatctgattctcactcttcttcctcctctcatctctctctaaaacactgattc 6033578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 8144150 - 8144092
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||| |||||||||||||  |||||||||||||||  ||||||||||| ||||||||    
T  8144150 gtgttctaaaatctgattctccctcttcttcctctcatctctctctaaaaaactgattc 8144092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 33167836 - 33167778
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||||| |||||||||||   ||||||||||||||  ||||||||||||||||||||    
T  33167836 gtgttccacaatctgattctccatcttcttcctctcatctctctctaaaacactgattc 33167778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 51543271 - 51543329
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||   | ||||||||||||  ||||||||||||||||||||    
T  51543271 gtgttccaaaatctgattctcctttttcttcctctcatctctctctaaaacactgattc 51543329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 29775649 - 29775705
Alignment:
Q  6 tgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgatt 62  Q
    |||||||||| ||||||||   ||||||||||||||  |||||||||||||||||||    
T  29775649 tgttccaaaaactgattctccatcttcttcctctcatctctctctaaaacactgatt 29775705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14816580 - 14816540
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctca 41  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  14816580 aattgtattacaaaatctgactctagctcttcttcctctca 14816540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 49696630 - 49696398
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||             
T  49696630 aattgtgttccaaaatctgattatagctcttctttctctcatctctctctaaaacactgattcaagaacctgctccattgacaaaagcatggaaaaagtg 49696531  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  49696530 aaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcttttttatcaaaagaaaaaggagcatatca 49696431  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  49696430 catgcactttgacatatataaagggcacaaaac 49696398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 50504518 - 50504284
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||             
T  50504518 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacattgattcaagaacctgctccattgacagaagcatggaaaatgtg 50504419  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttt--tatcaaaagaaaaatgagcatat 198  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||    
T  50504418 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacaaaagtttcgtttttatatcaaaagaaaaaggagcatat 50504319  T
Q  199 cacatgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||||    
T  50504318 cacatgcactttgacatatataaagggcacaaaac 50504284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7058092 - 7057860
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||| || |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  7058092 aattgtgttccaatatttgattctaactcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 7057993  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||     
T  7057992 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacataacgaaagtttcgtttttatcaaaagaaaaaggagcatgtcg 7057893  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  7057892 catgcactttgacatatataaagggcacaaaac 7057860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 50876667 - 50876899
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||| ||||||||||||||| ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||| |||||||             
T  50876667 aattgtgtttcaaaatctgattctaactcttcttcctttcatctctctctaaaacactgattcatgaacctgctccattgacagaagcatggaaaaagtg 50876766  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  50876767 gaaaaaggatgagtagttcaatgcaagcacgataatgaaataatgttctcttgaacgaaacgaaagtttcatttttatcaaatgaaaaatgagcatatca 50876866  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  50876867 catgcactttgacatatataaagggcacaaaac 50876899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4475036 - 4475268
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||| ||||||||||| | ||||||              
T  4475036 aattgtgtttcaaaatctgattctacctcttcttcctctcatctctctctaaaacactgatttaagaacatgctccattgaaagaagcatagaaaaagtg 4475135  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4475136 gaaaaaggatgactacctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 4475235  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||| |||||||    
T  4475236 catgcactttgacatatataaagggaacaaaac 4475268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 51462526 - 51462737
Alignment:
Q  4 tgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnnnnn 103  Q
    ||||||| ||||||||||||||||||||||||||||||  | | ||||||||||| |||||||||||| |||| |||||| |||||||                
T  51462526 tgtgttctaaaatctgattctagctcttcttcctctcatctttatctaaaacactaattcaagaacctcctcccttgacagaagcatggaaaaag----- 51462620  T
Q  104 nnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacat 203  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||           
T  51462621 ----gatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacaaaattttcgtttttatcaaaagaaaaaggagcat------- 51462709  T
Q  204 gcactttgacatatataaagggcacaaaac 233  Q
      ||||||||||||||||||||||||||||    
T  51462710 --actttgacatatataaagggcacaaaac 51462737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 49695704 - 49695762
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  49695704 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 49695762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 4475972 - 4475914
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||    
T  4475972 gtgttccaaaatctgattctccatcttcttcctctcatctctctctaaaacactgattc 4475914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 7057262 - 7057320
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  | |||||||||||||  ||||||||||||||||||||    
T  7057262 gtgttccaaaatctgattctcccccttcttcctctcatctctctctaaaacactgattc 7057320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 21259770 - 21259712
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||| ||||||||||||||  |||||||||||||||   |||||||||| ||||||||    
T  21259770 gtgtttcaaaatctgattctccctcttcttcctctcatcactctctaaaaaactgattc 21259712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 50877588 - 50877534
Alignment:
Q  9 tccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||| |||||||||||   ||||||||||||||  ||||||||||||||||||||    
T  50877588 tccataatctgattctccatcttcttcctctcatctctctctaaaacactgattc 50877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 39277306 - 39277359
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacact 58  Q
    ||||||||||||| ||||||   ||||||||||||||  |||||||||||||||    
T  39277306 gtgttccaaaatccgattctccgtcttcttcctctcatctctctctaaaacact 39277359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2191 - 2423
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| | |||||||             
T  2191 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaaaactgattcaagaacctgctccattgatagaagcatggaaaaagtg 2290  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2291 gaaaaaggatgagtagctcaaagcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaagagcatatca 2390  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  2391 catgcactttgacatatataaagggcacaaaac 2423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 3091 - 3036
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactga 60  Q
    |||||||||||||| |||||  |||||||||||||||  |||||||||||||||||    
T  3091 gtgttccaaaatcttattctccctcttcttcctctcatctctctctaaaacactga 3036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 8952604 - 8952372
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||||||||             
T  8952604 aattgtgttccaaaatctgattctagctcttcttcctctcaactctctctaaaacactgattcaagaatcttcttcattgacaaaagcatgaaaaaagtg 8952505  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8952504 gaaaaaggatgagtagctcaatgcaagcacaataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 8952405  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
     ||||||||||||||||||||||||||||||||    
T  8952404 tatgcactttgacatatataaagggcacaaaac 8952372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42074111 - 42074333
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| | |||||||             
T  42074111 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacactgatttaagaacctgctccattgatagaagcatggaaaaag-- 42074208  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  42074209 -------gatgagtagctcaatgcaagcacgataatgaaataatattctattgaacgaaacgaaagtatcgtttttatcaaaagaaaaaggagcatatca 42074301  T
Q  201 catgcactttgacatatataaagggcacaaaa 232  Q
     |||||||||||||||||||||||||||||||    
T  42074302 gatgcactttgacatatataaagggcacaaaa 42074333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 12279124 - 12279355
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  12279124 aattgtgttccaaaatctgattctaactctttttcctctcatgtctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 12279223  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  12279224 gaaaaaatatgagtagctcaatgcaagcaggataatgaaataatgttctattgaacgaaacgaaagttttgtttttatcaaaag-aaaaggagcatatca 12279322  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||| ||||||||||||||||||||    
T  12279323 catgcactttgatatatataaagggcacaaaac 12279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8347897 - 8348129
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||| |||||||||  |||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||| |||||||             
T  8347897 aattgtgttccataatctgattacagctcttcttcctctcatctctctttaaaacactgaatcaagaacctgctccattgacagaagcatgaaaaaaggg 8347996  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  8347997 gaaaaaggatgagtagctcaatgcaagcacggtaataaaataatgttctattgaacgaaatgaaagtttcgtttttatcaaaagaaaaaggagcatatca 8348096  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||| |||||    
T  8348097 catgcactttgacatatataaagggcataaaac 8348129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 305536 - 305763
Alignment:
Q  6 tgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnnnnnnn 105  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||||||||||||||||||| || |||||||                  
T  305536 tgttccaaaatctgattctaactcttcttcctctcatctctctctaaaacattaattcaagaacctgctccattggcagaagcatggaaaaagtggataa 305635  T
Q  106 nngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgc 205  Q
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||     
T  305636 aggatgagtagctcaatgcaagcacgataataaaataatgttctattaaacgaaacgaaagtttcatttttatcaaaagaaaaaggagcatatcacatgt 305735  T
Q  206 actttgacatatataaagggcacaaaac 233  Q
    ||||||||||| ||||||||||||||||    
T  305736 actttgacatacataaagggcacaaaac 305763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 45308574 - 45308695
Alignment:
Q  112 agtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcactttg 211  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45308574 agtagctgaatgcaagaacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatcacatgcactttg 45308673  T
Q  212 acatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||    
T  45308674 acatatataaagggcacaaaac 45308695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 45309390 - 45309332
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  45309390 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 45309332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 8951663 - 8951721
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||| ||||    
T  8951663 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacactaattc 8951721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 12280063 - 12280005
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||| ||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  12280063 gtgtttcaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 12280005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 42075009 - 42074955
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactg 59  Q
    |||||| |||||||||||||  ||||||||||| |||  ||||||||||||||||    
T  42075009 gtgttctaaaatctgattctccctcttcttcctgtcatctctctctaaaacactg 42074955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 8348731 - 8348695
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctca 41  Q
    ||||||||||||||||||||  |||||||||||||||    
T  8348731 gtgttccaaaatctgattctccctcttcttcctctca 8348695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 33446117 - 33446349
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||             
T  33446117 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacaaaaacatggaaaaagtg 33446216  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33446217 gaaaaaggatgagtagctcaatgcaagcacgataaagaaataatgttctattgaatgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 33446316  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||| ||||||||    
T  33446317 catgcactttgacatatataaaggacacaaaac 33446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 55227833 - 55227602
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||             
T  55227833 aattgtgttccaaaatatgattctagctcttcttcctctcatccctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagta 55227734  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55227733 gaaaaaggatgagtagctcaatgcaagcacgataataaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 55227634  T
Q  201 catgcactttgacatatataaagggcacaaaa 232  Q
    ||||||||||||||||||||||||||||||||    
T  55227633 catgcactttgacatatataaagggcacaaaa 55227602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40989362 - 40989129
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  40989362 aattgtgttcgaaaatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaggtg 40989263  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaaga-aaaatgagcatatc 199  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  40989262 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaaggaacatatc 40989163  T
Q  200 acatgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||||||||||    
T  40989162 acatgcactttgacatatataaagggcacaaaac 40989129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 2181598 - 2181817
Alignment:
Q  14 aatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnnnnnnnnngatgag 113  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||                ||||||    
T  2181598 aatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtggaaaaatgatgag 2181697  T
Q  114 tagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcactttgac 213  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  2181698 tagttcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaagagcatatcagatgcactttgac 2181797  T
Q  214 atatataaagggcacaaaac 233  Q
    ||||||||||||||||||||    
T  2181798 atatataaagggcacaaaac 2181817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 46985168 - 46985399
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  46985168 aattgtgttccaaaatctgattctaactcttcttcctct-atctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 46985266  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||    
T  46985267 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaaatttcatttttatcaaaataaaaaggagcatatca 46985366  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  46985367 catgcactttgacatatataaagggcacaaaac 46985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 55093436 - 55093666
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  55093436 aattgtgttccaaaatctgattctagttcttcttcctctca--tctctctaaaacactgattcaagaacctgctccattgacagaagcatgaaaaaagtg 55093533  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  55093534 gaaaaatgatgagtatctcaatgcaaacacgataatgaaataatgttctattgaacgaaacgaaaatttagtttttatcaaaagaaaaaggagcatatca 55093633  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
     ||||||||||||||||||||||||||||||||    
T  55093634 aatgcactttgacatatataaagggcacaaaac 55093666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17257847 - 17257616
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||| ||||||||| ||||||||||||  ||| ||||||||||||||||| ||| |||||||||||||| |||||||             
T  17257847 aattgtgttccaaaatcttattctagcttttcttcctctcatctctatctaaaacactgattcaggaatctgctccattgacagaagcatgtaaaaagtg 17257748  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17257747 aaaaaaggatgagtagctcaatgcaaccacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaattgagcatatca 17257648  T
Q  201 catgcactttgacatatataaagggcacaaaa 232  Q
    |||||||||||||||||||||| |||||||||    
T  17257647 catgcactttgacatatataaatggcacaaaa 17257616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5636454 - 5636222
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | || ||||             
T  5636454 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacattgattcaagaacctgctccattgatagaaacatggaaaaagtg 5636355  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||    
T  5636354 gaaaaaagatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagttttgtttttatcaaaagaaaaaggaacatatca 5636255  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
     |||||||||| |||||||||||| ||||||||    
T  5636254 gatgcactttgtcatatataaaggacacaaaac 5636222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 54477043 - 54476811
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||| ||| |||||||||||||||||||| |||||||             
T  54477043 aattgtgttccaaaatctgattctaactcttcttcctctcatctctctctaaagcactaatttaagaacctgctccattgacagaagcatggaaaaagtg 54476944  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |    
T  54476943 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaatggagcatataa 54476844  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||| |||||||| |||||||    
T  54476843 catgcactttgacatacataaagggaacaaaac 54476811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 36316117 - 36316349
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||||||||||||||| | ||||||||| |||  |||||||||||||||||||||||||||||||||||||||  |||||||             
T  36316117 aattgtgttccaaaatctgattctatcgcttcttcctatcatctctctctaaaacactgattcaagaacctgctccattgactgaagcatggtaaaagtg 36316216  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  36316217 gaaaaatgatgagtaactcaatgtaagcacgataatgaaataatgttctattgagcgaaacaaaagtttcgtttttatcaaaagaaaaaggagcatatca 36316316  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||| |||||    
T  36316317 catgcactttgacatatataaagggcagaaaac 36316349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 51226193 - 51225962
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||| ||||||||||| ||||||  |||||||||| ||||||||||||||||| ||||||||| | |||||||             
T  51226193 aattgtgttccaaaatctgattatagctcttctttctctcatctctctctaaagcactgattcaagaacctactccattgatagaagcatggaaaaagtg 51226094  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  51226093 gaaaaaggatgagtagctcaatgcaagcaccataatgaaataatgttctattgaacgaaacgatagtttcgtttttatcaaaa-aaaaaggagcatatca 51225995  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||| ||||||    
T  51225994 catgcactttgacatatataaagggcccaaaac 51225962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 50381336 - 50381119
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||             
T  50381336 aattgtgttccaaaatttgattatagctcttcttcctctcatatctctctaaaacactgattcaagaatctgctccattgacagaagcatggaaaaaa-- 50381239  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacg-----aaacgaaagtttcgtttttatcaaaagaaaaatgagca 195  Q
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||||    
T  50381238 -------gataagtagctcaatgcaagcacgataataaaataatgttctattgaacggaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagca 50381146  T
Q  196 tatcacatgcactttgacatatataaa 222  Q
    |||||||||||||||||||||||||||    
T  50381145 tatcacatgcactttgacatatataaa 50381119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 33944218 - 33944093
Alignment:
Q  108 gatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcac 207  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  33944218 gatgagtagctcaattcaagcacgataatgaaaaaatgttttattgaacgaaacgaaagttttgtttttatcaaaagaaaaaagagcatatcacatgcac 33944119  T
Q  208 tttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||    
T  33944118 tttgacatatataaagggcacaaaac 33944093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 50763958 - 50763800
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||| |||||||             
T  50763958 aattgtgttccaaaatttgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacatactccattgacagaagcatggaaaaagtg 50763859  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaa 159  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50763858 gaaaaatgatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaa 50763800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 32771038 - 32771129
Alignment:
Q  142 aatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||||    
T  32771038 aatgttctatcgaacgaagcgaaagtttcgtttttatcaaaagaaaaaggagcatattacatgcactttggtatatataaagggcacaaaac 32771129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 32770937 - 32771007
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacct 71  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  32770937 aattgtgttccaaaatctgattttagctcttcttcctctcacctctctctaaaacactgattcaagaacct 32771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 36317051 - 36316993
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  36317051 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 36316993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 54476393 - 54476451
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  54476393 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 54476451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 49002008 - 49002065
Alignment:
Q  6 tgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  49002008 tgttccaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 49002065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 33446999 - 33446941
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||| ||||  ||||||||||||||||||||    
T  33446999 gtgttccaaaatctgattctccctcttcttccactcatctctctctaaaacactgattc 33446941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 5635690 - 5635748
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||| ||  ||||||||||||| ||||||    
T  5635690 gtgttccaaaatctgattctccctcttcttcctcccatctctctctaaaacattgattc 5635748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 32771823 - 32771765
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||||||||||| |||||   ||||||||||||||  ||||||||||||||||||||    
T  32771823 gtgttccaaaatctaattctccatcttcttcctctcatctctctctaaaacactgattc 32771765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 51225268 - 51225326
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||| ||||||||||||||  |||||||||||| ||  ||||||||||||||||||||    
T  51225268 gtgtttcaaaatctgattctccctcttcttcctcccatctctctctaaaacactgattc 51225326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 55094350 - 55094288
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||||||| ||||||| |||||  |||||||||||||||  |||||||||||||| |||||    
T  55094350 aattgtgttctaaaatctaattctccctcttcttcctctcatctctctctaaaacaccgattc 55094288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 17256924 - 17256980
Alignment:
Q  7 gttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||||| | ||||||    
T  17256924 gttccaaaatctgattctccctcttcttcctctcatctctctctaaaatattgattc 17256980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 35494903 - 35494852
Alignment:
Q  12 aaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||||||||||  |||||||||||||||  ||||||||||| ||||||||    
T  35494903 aaaatctgattctccctcttcttcctctcatctctctctaaaaaactgattc 35494852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 44077338 - 44077570
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  44077338 aattgtgttctaaaatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 44077437  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  44077438 gaaaaaggatgagtagctcaatgcaagcacaataatgaaataatgttctattgaacgaaatgaaagtttcatttttatcaaaagaaaaatgagcatatca 44077537  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  44077538 catgcactttgacatatataaagggcacaaaac 44077570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21633043 - 21632811
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||  |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  21633043 aattgtgttccaaaatcatattctagctcttcttcctctaatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 21632944  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21632943 gaaaaaggatgagtagttcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 21632844  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  21632843 catgcactttgacatatataaagggcacaaaac 21632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 28719645 - 28719878
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  28719645 aattgtgctccaaaatctgattctagctcttcttcctctcatctctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtg 28719744  T
Q  101 nnnnnnn-gatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatc 199  Q
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28719745 aaaaaaatgatgagtagctcaatgcaagcacgataatgaaataatcttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatc 28719844  T
Q  200 acatgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||  |||||||||    
T  28719845 acatgcactttgacatatataaaatgcacaaaac 28719878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 23686537 - 23686305
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||| |||||||||||||| |||||||||||||||  ||||||||||| | |||||||||||||||||||||||||| || ||||             
T  23686537 aattgtgttctaaaatctgattctacctcttcttcctctcatctctctctaaaagagtgattcaagaacctgctccattgacagaaacatggaaaaagtg 23686438  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23686437 gaaaaatgacgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 23686338  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
     ||||||||||||||||||||||||||||||||    
T  23686337 aatgcactttgacatatataaagggcacaaaac 23686305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 23049536 - 23049306
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||| |||  |||||||||||||||||||  |||||  |||||||||||||||||||||||||| ||||| ||||||| |||||||             
T  23049536 aattgtgttacaatgtctgattctagctcttctttatctca--tctctctaaaacactgattcaagaacatgctctattgacagaagcatggaaaaagtg 23049439  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23049438 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttatattgaaccaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 23049339  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  23049338 catgcactttgacatatataaagggcacaaaac 23049306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43891386 - 43891168
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  43891386 aattgtgttccaaaatctgattctatctcttcttcctctca--tctctctaaaacactgattcaagaacctgctccattgacagaagcatgaaaaaagtg 43891289  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacg-aaagtttcgtttttatcaaaagaaaaatgagcatatc 199  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||     
T  43891288 gaaaaatgatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaaactttcgtttttatcaaaagaaaaaggagcatatt 43891189  T
Q  200 acatgcactttgacatatata 220  Q
    ||||||||||||| |||||||    
T  43891188 acatgcactttgatatatata 43891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 16144653 - 16144421
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||| |||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||| ||| ||||||||| |||||||             
T  16144653 aattatgttccaaaatctgattctagctcttcttcctctcttctctctctaaaacactaattcaagaacttgccccattgacataagcatggaaaaagtg 16144554  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  16144553 aaaaaaagatgagtagctcaatgtaagcacgataatgaaataatgttctattaaacgaaacaaaagtttcgtttttatcaaaagaaaaaggagcatatca 16144454  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    ||| |||||||||| | ||||||||||||||||    
T  16144453 cattcactttgacaaacataaagggcacaaaac 16144421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 44078249 - 44078193
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  44078249 gtgttccaaaatctgattctccctcttcttcctctca--tctctctaaaacactgattc 44078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 11364170 - 11364228
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||||||||||| |  ||||||||||||||||||||    
T  11364170 gtgttccaaaatctgattctccctcttcttcctctaatctctctctaaaacactgattc 11364228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 21632134 - 21632191
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  |||||||||| |||||||||    
T  21632134 gtgttccaaaatctgattctc-ctcttcttcctctcatctctctctaaaccactgattc 21632191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 43890448 - 43890506
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||| ||||||   ||||||||||||||  ||||||||||||||||||||    
T  43890448 gtgttccaaaatccgattctctatcttcttcctctcatctctctctaaaacactgattc 43890506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 52003 - 51953
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacac 57  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  52003 gtgttccaaaatctgattctccctcttcttcctctca--tctctctaaaacac 51953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 23686165 - 23686216
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaaca 56  Q
    ||||||||||||||||||||  |||||||| ||||||  |||||||||||||    
T  23686165 gtgttccaaaatctgattctccctcttcttgctctcatctctctctaaaaca 23686216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 23048625 - 23048683
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||| |||||||||||||  ||| |||||||||||  ||||| ||||||||||||||    
T  23048625 gtgttcaaaaatctgattctccctcctcttcctctcatctctctttaaaacactgattc 23048683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 30504915 - 30504686
Alignment:
Q  4 tgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnnnnn 103  Q
    ||||||||||||||||||| || |||||||||||||||  |||||||||||||||||||||||||| |||| ||||||||||| ||||                
T  30504915 tgtgttccaaaatctgattttaactcttcttcctctcatctctctctaaaacactgattcaagaacatgcttcattgacaaaaacatgaaaaaagtggaa 30504816  T
Q  104 nnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacat 203  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30504815 aaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatctcacat 30504716  T
Q  204 gcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||||||    
T  30504715 gcactttgacatatataaagggcacaaaac 30504686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24278412 - 24278643
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||||||| |||||||| |||||||             
T  24278412 aattgtgttccaaaatctgatactagctcttcttcctctcatctctctctaaaacaccgattcaagaacctgcttcattgacagaagcatggaaaagtgt 24278511  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24278512 aaaaat-gatgagtagctcaatgcaagcatgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaggagcatatca 24278610  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  24278611 catgcactttgacatatataaagggcacaaaac 24278643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 24279337 - 24279279
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||    
T  24279337 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaatactgattc 24279279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 42437742 - 42437684
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||    
T  42437742 gtgttccaaaatctgattctccctcttcttcctctcatctctctctaaaaaactgattc 42437684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 30503994 - 30504051
Alignment:
Q  6 tgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||| |||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  30503994 tgttctaaaatctgattctccctcttcttcctctcatctctctctaaaacactgattc 30504051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21212 - 20982
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  21212 aattgtgttccaaaatttgattctaactcttcttcctctca--tctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtt 21115  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||    
T  21114 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacaaaacgaaagtttcgtttttatcaaaagaaaaaggagcatgtca 21015  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    | |||||||||||||||||||||||||||||||    
T  21014 cttgcactttgacatatataaagggcacaaaac 20982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 20387 - 20442
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||| |||||||||  ||||||||||||||||||||    
T  20387 gtgttccaaaatctgattctccctctt-ttcctctca--tctctctaaaacactgattc 20442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2172829 - 2173059
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||             
T  2172829 aattgtgttccaaaatttgattctaactcttcttcctctca--tctctctaaaacactgattcaagaacctgctccattgacagaagcatggaaaaagtt 2172926  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||    
T  2172927 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacaaaacgaaagtttcgtttttatcaaaagaaaaaggagcatgtca 2173026  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    | |||||||||||||||||||||||||||||||    
T  2173027 cttgcactttgacatatataaagggcacaaaac 2173059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 22516284 - 22516516
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||| ||||||||||| |||||||             
T  22516284 aattgtgttccaaaatctgattctagctcttcttcctctcatctctctctaaaacactaattcaagaaccttctccattgacagaagcatgaaaaaagtg 22516383  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaag-aaaaatgagcatatc 199  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  22516384 aaaaag-gatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaaaggaacatatc 22516482  T
Q  200 acatgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||||||||||    
T  22516483 acatgcactttgacatatataaagggcacaaaac 22516516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4793543 - 4793313
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| |||||||             
T  4793543 aattgtgttgcaaaatctgattctagctcttcttcctctca--tctctctaaaacactaattcaagaacctgctccattgacagaagcatgaaaaaagtg 4793446  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  4793445 gaaaaaggatgagtagctcaatgcaagcacgataatgaaataatgttctattgagcgaaatgaaagtttcgtttttatcaaaagaaaaaggagcatatca 4793346  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||| ||||||||||||||| ||||||||||    
T  4793345 catgcattttgacatatataaatggcacaaaac 4793313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11624072 - 11623846
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattcaagaacctgctccattgacaaaagcatgnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||      ||  ||||||||||||||||||||||||||||||| |||||| | ||| |||             
T  11624072 aattgtgttccaaaatctgattctagctcttct------catctctctctaaaacactgattcaagaacctgcttcattgatagaagtatgaaaaaagtg 11623979  T
Q  101 nnnnnnngatgagtagctcaatgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatca 200  Q
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  11623978 aaaaaaggatgagtagctcaatgcaaacacgatgatgaaataatgttctattgaacgaaatgaaagtttcgtttttatcaaaagaaaaaggagcatatca 11623879  T
Q  201 catgcactttgacatatataaagggcacaaaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  11623878 catgcactttgacatatataaagggcacaaaac 11623846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 29874202 - 29874090
Alignment:
Q  121 atgcaagcacgataatgaaataatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcactttgacatatata 220  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  29874202 atgcatgcatgataatgaaataatgttctattgaacgacacgaaagtttcgtttttatcaaaagaaaaagaagcatatcacatgcactttgacatatata 29874103  T
Q  221 aagggcacaaaac 233  Q
    |||||||||||||    
T  29874102 aagggcacaaaac 29874090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 2017457 - 2017536
Alignment:
Q  142 aatgttctattgaacgaaacgaaagtttcgtttttatcaaaagaaaaatgagcatatcacatgcactttgacatatataaagggcacaaaac 233  Q
    ||||||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  2017457 aatgttctattgaacgaaacgaaagtttcgtt------------aaaaggagcatatcacatgcactttgacatatatagaggacacaaaac 2017536  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 2018242 - 2018184
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||| ||||||    
T  2018242 gtgttccaaaatctgattctctctcttcttcctctcatctctctctaaaacagtgattc 2018184  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 29873389 - 29873447
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||    
T  29873389 gtgttccaaaatctgattctccctcttcttcctttcatctctctctaaaacactgattc 29873447  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 2173654 - 2173598
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||| |||||||||  ||||||||||||||||||||    
T  2173654 gtgttccaaaatctgattctccctctttttcctctca--tctctctaaaacactgattc 2173598  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 4792621 - 4792679
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  ||||||||  |||||  ||||||||||||||||||||    
T  4792621 gtgttccaaaatctgattctccctcttctttttctcatctctctctaaaacactgattc 4792679  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 11623508 - 11623566
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    ||||||||||||||||||||  || ||||| ||||||  | ||||||||||||||||||    
T  11623508 gtgttccaaaatctgattctcccttttctttctctcatctttctctaaaacactgattc 11623566  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 22517201 - 22517143
Alignment:
Q  5 gtgttccaaaatctgattctagctcttcttcctctcaattctctctaaaacactgattc 63  Q
    |||||||||||||| |||||  ||||||||||||| |  |||||||||| |||||||||    
T  22517201 gtgttccaaaatctaattctccctcttcttcctcttatctctctctaaatcactgattc 22517143  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23131 - 23171
Alignment:
Q  1 aattgtgttccaaaatctgattctagctcttcttcctctca 41  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  23131 aattgtattacaaaatctgactctagctcttcttcctctca 23171  T

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