View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1848_low_4 (Length: 324)

Name: NF1848_low_4
Description: NF1848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1848_low_4
NF1848_low_4
[»] chr2 (2 HSPs)
chr2 (1-303)||(35209608-35209912)
chr2 (139-245)||(10211249-10211355)
[»] chr4 (3 HSPs)
chr4 (7-293)||(29508296-29508584)
chr4 (7-247)||(2542615-2542855)
chr4 (7-247)||(48444619-48444859)
[»] scaffold0577 (1 HSPs)
scaffold0577 (7-223)||(4147-4363)
[»] chr5 (2 HSPs)
chr5 (64-247)||(27454488-27454671)
chr5 (201-274)||(14492668-14492741)
[»] chr3 (2 HSPs)
chr3 (91-248)||(21687768-21687925)
chr3 (109-245)||(51193921-51194057)
[»] chr8 (2 HSPs)
chr8 (7-247)||(32284712-32284952)
chr8 (91-135)||(10998098-10998142)
[»] scaffold0004 (1 HSPs)
scaffold0004 (65-247)||(214415-214597)
[»] chr6 (1 HSPs)
chr6 (7-123)||(32955514-32955630)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 35209608 - 35209912
Alignment:
Q  1 tataagttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209608 tataagttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaat 35209707  T
Q  101 cgtctgtgaagagaat--gtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggat 198  Q
    ||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  35209708 cgtctgtgaagaggatatgtgagaagtaacgggcgcacccgtgcaaatcatgatacctctaatatcatttcgatgatcaacttcgtgaacaaggaaggat 35209807  T
Q  199 aaaccttcaacacaaataatgaaaaggtagggtgaaagaggatcaccctatcgaaaaccacgacccaacataataggtcctacagttgctccatttacat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  35209808 aaaccttcaacacaaataatgaaaaggtagggtgaaagaggatcaccctatcgaaaaccacaacccaacataataggtcctacagttgctccattgacat 35209907  T
Q  299 agacc 303  Q
    |||||    
T  35209908 agacc 35209912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 10211355 - 10211249
Alignment:
Q  139 gtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaaccttcaacacaaataatgaaaaggtagggtgaaagag 238  Q
    ||||| |||||  ||| |||||||||||| | ||| ||| ||||| ||| |||| |||| |  |||||||||||||||||||| || || ||||||||||    
T  10211355 gtgcatatcatagtacctctaatatcattacaacgttcagcttcgcgaagaagggaggagaggccttcaacacaaataatgaacagataaggtgaaagag 10211256  T
Q  239 gatcacc 245  Q
    |||||||    
T  10211255 gatcacc 10211249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 29508584 - 29508296
Alignment:
Q  7 ttaatagcttgcctcgaagcttcttcataaacaaccaatatatattc--cataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaatcgtc 104  Q
    ||||||| ||||  ||||||||||||||||||||||||||||| ||   ||||||||| ||||| | |||||| |||| |||||||||||||||||||||    
T  29508584 ttaatagtttgctccgaagcttcttcataaacaaccaatatatttttttcataacaactgcctctcattcacaagctctaaaaaatagaaaacaatcgtc 29508485  T
Q  105 tgtgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaacct 204  Q
    ||  ||||| | ||||||| |||  || ||| ||||||||||||||  || |||||||||||||  |||  || ||||  ||| |||| | |||||||||    
T  29508484 tgcaaagaggaggtgagaaataattggcgcatccgtgcaaatcatggcacctctaatatcatttatacgcccagcttcacgaataagggatgataaacct 29508385  T
Q  205 tcaacacaaataatgaaaaggtagggtgaaagaggatcaccctatcgaaaaccacgacccaacataataggtcctacagttgctccatt 293  Q
    ||||| |||||||| |||||||| ||||||||||||||   || ||||| ||||| |||| ||| ||||||||||||| ||||||||||    
T  29508384 tcaacgcaaataataaaaaggtatggtgaaagaggatcgttctgtcgaagaccacaaccctacacaataggtcctacaattgctccatt 29508296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 2542855 - 2542615
Alignment:
Q  7 ttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaatcgtctg 106  Q
    ||||| |||||||| ||| | ||||||||   | |||| |||| || ||||  ||| ||||||| |||||| |||||||| || ||||||||||||||||    
T  2542855 ttaatggcttgcctagaaacctcttcataggtagccaaaatatttttcatacaaacagcctcacgttcacaagctccaaagaaaagaaaacaatcgtctg 2542756  T
Q  107 tgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaaccttc 206  Q
      ||||||| ||||||| |||  ||||||   || || |||||  ||| |||||||||||| ||| | ||| ||||  ||| |||| |||| |  |||||    
T  2542755 caaagagaaggtgagaaataattggtgcatttgtccatatcatattacctctaatatcattacgatgttcagcttcacgaataagggaggaaaggccttc 2542656  T
Q  207 aacacaaataatgaaaaggtagggtgaaagaggatcaccct 247  Q
    |||||| ||  |||| || || ||||| || ||||||||||    
T  2542655 aacacagatgttgaatagataaggtgagaggggatcaccct 2542615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 48444859 - 48444619
Alignment:
Q  7 ttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaatcgtctg 106  Q
    ||||| || |||| ||||||||||||||||  | |||| ||||  | ||||  ||| |||||||  ||||| |||| ||| || ||||| ||| ||||||    
T  48444859 ttaatggcctgccccgaagcttcttcataagtagccaaaatattcttcatacaaacagcctcacgatcacaagctctaaagaaaagaaagcaaccgtctg 48444760  T
Q  107 tgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaaccttc 206  Q
      |||||||  |||||| |||| ||| || | ||||| |||||  ||| |||||| ||||| | ||| ||| ||||  ||| |||| |||| | ||||||    
T  48444759 caaagagaagatgagaaataactggtacatctgtgcatatcatagtacctctaatgtcattacaacgttcagcttcacgaataagggaggaaagaccttc 48444660  T
Q  207 aacacaaataatgaaaaggtagggtgaaagaggatcaccct 247  Q
    ||||||||| ||||| |  || |||||||| ||||||||||    
T  48444659 aacacaaatgatgaataaataaggtgaaaggggatcaccct 48444619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 4147 - 4363
Alignment:
Q  7 ttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaatcgtctg 106  Q
    ||||| ||||||| ||||||||||||||||  | |||| |||| || ||||  ||| ||| ||| |||||| |||| ||| || ||||||||||||||||    
T  4147 ttaatggcttgccccgaagcttcttcataagtagccaaaatatttttcatacaaacagccgcacgttcacaagctctaaagaaaagaaaacaatcgtctg 4246  T
Q  107 tgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaaccttc 206  Q
      ||||||| ||||||| |||  |||||| | ||||| |||||  ||| |||||||||||| ||||| ||| ||||  |||  ||  |||| | ||||||    
T  4247 caaagagaaggtgagaaataattggtgcatctgtgcatatcatagtacctctaatatcattgcgacgttcagcttcacgaatcagagaggaaagaccttc 4346  T
Q  207 aacacaaataatgaaaa 223  Q
    ||||||||| |||||||    
T  4347 aacacaaatgatgaaaa 4363  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 247
Target Start/End: Original strand, 27454488 - 27454671
Alignment:
Q  64 gcctcaccttcacatgctccaaaaaatagaaaacaatcgtctgtgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatat 163  Q
    ||||||| |||||| |||| ||| || |||||||||||||||  ||||||||  |||||| |||| |||||| | ||||| |||||  ||  | |||| |    
T  27454488 gcctcacgttcacaagctctaaagaaaagaaaacaatcgtctacgaagagaagatgagaaataactggtgcatctgtgcatatcatagtatctttaatgt 27454587  T
Q  164 catttcgacgatcaacttcgtgaacaaggaaggataaaccttcaacacaaataatgaaaaggtagggtgaaagaggatcaccct 247  Q
    |||| ||||| ||||||||   || |||| |||| | ||||||||||| ||| ||||| |  || |||||||| ||||||||||    
T  27454588 cattacgacgttcaacttcactaataagggaggaaagaccttcaacacgaatgatgaacaaataaggtgaaaggggatcaccct 27454671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 14492668 - 14492741
Alignment:
Q  201 accttcaacacaaataatgaaaaggtagggtgaaagaggatcaccctatcgaaaaccacgacccaacataatag 274  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||  |  |||| |||||||||| ||| |||||    
T  14492668 accttcaacacaaataataaaaaggtaaggtgagagaggatcactttgacgaagaccacgacccgacacaatag 14492741  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 21687925 - 21687768
Alignment:
Q  91 agaaaacaatcgtctgtgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaa 190  Q
    ||||| ||||| ||||  ||||||||||||||| |||  |||||| | ||||| |||||  ||| ||  |||||||| ||||| ||| |||| |||| ||    
T  21687925 agaaagcaatcatctgcaaagagaatgtgagaaataattggtgcatctgtgcatatcatagtacctcggatatcattacgacgttcagcttcatgaataa 21687826  T
Q  191 ggaaggataaaccttcaacacaaataatgaaaaggtagggtgaaagaggatcacccta 248  Q
    |||| || | |||||||||||| || ||||| |  || ||||| ||||||||||||||    
T  21687825 ggaaagaaagaccttcaacacagatgatgaacaaataaggtgagagaggatcacccta 21687768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 51193921 - 51194057
Alignment:
Q  109 aagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaaccttcaa 208  Q
    |||||||  |||||| |||  |||||| | ||||| |||||  ||| |||||| ||||| ||||| ||| ||||  |||  ||| |||| | ||||||||    
T  51193921 aagagaagatgagaaataaatggtgcatctgtgcatatcatagtacctctaatgtcattgcgacgttcagcttcacgaattagggaggaaagaccttcaa 51194020  T
Q  209 cacaaataatgaaaaggtagggtgaaagaggatcacc 245  Q
    ||||||| ||||| |  || |||||||||||||||||    
T  51194021 cacaaatgatgaacaaataaggtgaaagaggatcacc 51194057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 32284712 - 32284952
Alignment:
Q  7 ttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaatcgtctg 106  Q
    ||||| || |||| ||||||||||||||||  | |||| ||||  | ||||  |||  |||||| |||||| |||  ||| || ||||| ||||| | ||    
T  32284712 ttaatggcctgccccgaagcttcttcataagtagccaaaatattcttcatacaaacatcctcacgttcacaagctttaaagaaaagaaagcaatcatttg 32284811  T
Q  107 tgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatcatttcgacgatcaacttcgtgaacaaggaaggataaaccttc 206  Q
      |||| ||| |||||| |||| ||||||   ||||| |||||  ||| |||||| ||||| ||||| ||||||||  |||  ||| |||| | ||||||    
T  32284812 caaagataatatgagaaataactggtgcatatgtgcatatcatagtacctctaatgtcattgcgacgttcaacttcacgaattagggaggaaagaccttc 32284911  T
Q  207 aacacaaataatgaaaaggtagggtgaaagaggatcaccct 247  Q
    ||||||||| ||||| |  || |||||||||||||||||||    
T  32284912 aacacaaatgatgaacaaataaggtgaaagaggatcaccct 32284952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 10998142 - 10998098
Alignment:
Q  91 agaaaacaatcgtctgtgaagagaatgtgagaagtaacgggtgca 135  Q
    ||||||||||||||||  ||||||||||||||| |||| ||||||    
T  10998142 agaaaacaatcgtctgcaaagagaatgtgagaaataactggtgca 10998098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 247
Target Start/End: Complemental strand, 214597 - 214415
Alignment:
Q  65 cctcaccttcacatgctccaaaaaatagaaaacaatcgtctgtgaagagaatgtgagaagtaacgggtgcacccgtgcaaatcatgatacatctaatatc 164  Q
    |||||| |||||| |||| ||| || |||||  ||||||||   |||||||  |||||| |||||||||||   ||||| |||||  ||  |||||| ||    
T  214597 cctcacgttcacaagctctaaagaaaagaaagaaatcgtctacaaagagaagatgagaaataacgggtgcatatgtgcatatcatagtaactctaatgtc 214498  T
Q  165 atttcgacgatcaacttcgtgaacaaggaaggataaaccttcaacacaaataatgaaaaggtagggtgaaagaggatcaccct 247  Q
    ||| ||||| ||| ||||  ||| |||| |||| ||||||||| ||||||| ||||| |  || |||||||| ||||||||||    
T  214497 attacgacgttcagcttcacgaataagggaggaaaaaccttcagcacaaatgatgaacaaataaggtgaaaggggatcaccct 214415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 32955630 - 32955514
Alignment:
Q  7 ttaatagcttgcctcgaagcttcttcataaacaaccaatatatattccataacaaccgcctcaccttcacatgctccaaaaaatagaaaacaatcgtctg 106  Q
    ||||| ||||| ||||||||||||||||||  |  ||| |||| || ||||  ||| |||||||  ||||| |||| ||| || ||||||||||||||||    
T  32955630 ttaatggcttgactcgaagcttcttcataagtagtcaaaatatttttcatacaaacagcctcactctcacaggctctaaagaagagaaaacaatcgtctg 32955531  T
Q  107 tgaagagaatgtgagaa 123  Q
      ||||||| |||||||    
T  32955530 caaagagaaggtgagaa 32955514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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