View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1848_low_6 (Length: 290)
Name: NF1848_low_6
Description: NF1848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1848_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 36722191 - 36722465
Alignment:
| Q |
16 |
tttttgatgatatttctgatacttacatgcttcaaaattttcgtttaatcgcttaaannnnnnnncttttcttaagctctgccctcttcttgtnnnnnnn |
115 |
Q |
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| T |
36722191 |
ttttttatgatatttctggtacttacatgcctcaaaatgttcgtttaatcgcttagtttttttttcttttcttgagctctgccctcttcttgtaaaaaaa |
36722290 |
T |
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| Q |
116 |
nnctagacaccttctatctaaatgaccattgttatcatattttggttttgaatacgcacatcaattgtcatgattaatggaatatcggattattctactt |
215 |
Q |
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| T |
36722291 |
aactagacaccttctatctaaatgactattgttatcatattttggctttgaatacgtacatcaattgtcatgattaatggaatatcgaattattctactt |
36722390 |
T |
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| Q |
216 |
aattttttaaagggttgtaaatgaagtaactaatagctccaatccatccattatagtgcaagttaaattatactc |
290 |
Q |
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| T |
36722391 |
aattttttaaagggttgtaaatgaagtaactaatagctccaatccatccattatagtgcaagttaaattatactc |
36722465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 36726700 - 36726748
Alignment:
| Q |
239 |
aagtaactaatagctccaatccatccattatagtgcaagttaaattata |
287 |
Q |
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| T |
36726700 |
aagtaagtaatagcttcaatccattcataatagtgcaagttaaattata |
36726748 |
T |
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