View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1848_low_8 (Length: 227)
Name: NF1848_low_8
Description: NF1848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1848_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32710180 - 32709959
Alignment:
| Q |
1 |
cacaagtattgcacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtattttatacatgaattcatatttaacatatcat |
100 |
Q |
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| T |
32710180 |
cacaagtattgcacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtat-----acatgaattcatatttaacatatcat |
32710086 |
T |
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| Q |
101 |
gtacgtgcatgtaaattgttttgtaattgatgtaattggttttatatacagcaacaagtgttttctttgacaaagtccattagagaagaagccataacta |
200 |
Q |
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| T |
32710085 |
gtacgtgcatgtaaattgttttgtaattgatgtaattggttttatatacagcaacaagtgctttctttgacaaagtccattagagaagaagccataacta |
32709986 |
T |
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| Q |
201 |
gtctctactgcagtgcatacccaaata |
227 |
Q |
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| T |
32709985 |
gtctctactgcagtgcatacccaaata |
32709959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 32629110 - 32629044
Alignment:
| Q |
12 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtattttatacat |
78 |
Q |
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| T |
32629110 |
cacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttatacat |
32629044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 7298547 - 7298502
Alignment:
| Q |
10 |
tgcacatgaatggaggtgttggagaagcaagctatgcaaacaactc |
55 |
Q |
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| T |
7298547 |
tgcacatgaatggaggtgatggagaaacaagctatgcaaaaaactc |
7298502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5812225 - 5812169
Alignment:
| Q |
14 |
catgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtatt |
70 |
Q |
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| T |
5812225 |
catgaatggaagtgttgaagaagcaagctatgcaaacaactccttgcttcaggtatt |
5812169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 27737676 - 27737613
Alignment:
| Q |
12 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtattttata |
75 |
Q |
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| T |
27737676 |
cacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggtatattata |
27737613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 8028707 - 8028773
Alignment:
| Q |
2 |
acaagtattgcacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggta |
68 |
Q |
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| T |
8028707 |
acaagtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
8028773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 21945119 - 21945064
Alignment:
| Q |
12 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggt |
67 |
Q |
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| T |
21945119 |
cacatgaatggaggcgtcgatgaagcaagctatgcaaacaactcctcacttcaggt |
21945064 |
T |
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