View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1848_low_9 (Length: 226)
Name: NF1848_low_9
Description: NF1848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1848_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 46998347 - 46998536
Alignment:
| Q |
23 |
atgtttcaacatgaatcttaacatttctttctaactatataacacccttcacctctacttttcccttttatttattttccttttcaaacacaaaaataaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46998347 |
atgtttcaacatgaatcttaacatttctttctaactatataacacccttcacctcttcttttcccttttatttattttccttttcaaacacaaaaataaa |
46998446 |
T |
|
| Q |
123 |
atcagatatctctatgggtatgttgttgtattaccctgttcctattcttctttctttctcactttctttcgttgttccttctgttattac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46998447 |
atcagatatctctatgggtatgttgttgtattaccctgttcctattcttctttctttctcactttctttcgttgttccttctgttattac |
46998536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University