View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1849-Insertion-3 (Length: 376)

Name: NF1849-Insertion-3
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1849-Insertion-3
NF1849-Insertion-3
[»] chr1 (46 HSPs)
chr1 (154-359)||(25507231-25507437)
chr1 (201-356)||(35979844-35980000)
chr1 (181-356)||(6248430-6248612)
chr1 (180-359)||(6693646-6693830)
chr1 (203-356)||(9330755-9330910)
chr1 (181-359)||(18834100-18834290)
chr1 (191-356)||(40094730-40094892)
chr1 (8-86)||(25507515-25507592)
chr1 (155-355)||(17989402-17989610)
chr1 (181-333)||(35375548-35375707)
chr1 (216-356)||(15881779-15881920)
chr1 (170-356)||(23474649-23474829)
chr1 (180-333)||(25865546-25865700)
chr1 (180-356)||(26344596-26344774)
chr1 (181-313)||(9961788-9961921)
chr1 (201-333)||(21685121-21685254)
chr1 (182-356)||(36202988-36203175)
chr1 (201-355)||(3937121-3937273)
chr1 (156-356)||(10847046-10847253)
chr1 (231-356)||(8269002-8269129)
chr1 (201-327)||(50471485-50471612)
chr1 (156-329)||(16063195-16063376)
chr1 (183-333)||(16537379-16537524)
chr1 (170-259)||(52829254-52829343)
chr1 (182-325)||(50951556-50951700)
chr1 (231-356)||(18310323-18310450)
chr1 (181-356)||(25559561-25559745)
chr1 (181-356)||(27507051-27507238)
chr1 (232-342)||(11072971-11073082)
chr1 (201-355)||(35992157-35992322)
chr1 (231-359)||(52380331-52380463)
chr1 (205-355)||(9249669-9249815)
chr1 (201-321)||(382448-382579)
chr1 (210-328)||(34721330-34721449)
chr1 (231-297)||(27455576-27455642)
chr1 (154-232)||(36781724-36781802)
chr1 (287-359)||(12973921-12973994)
chr1 (228-328)||(26063808-26063909)
chr1 (199-259)||(31451341-31451401)
chr1 (181-260)||(3532557-3532636)
chr1 (231-332)||(8165143-8165245)
chr1 (203-245)||(44828374-44828416)
chr1 (203-245)||(45949096-45949138)
chr1 (234-322)||(32909972-32910061)
chr1 (231-359)||(41751573-41751704)
chr1 (205-269)||(50311137-50311202)
[»] chr5 (44 HSPs)
chr5 (185-354)||(35727331-35727499)
chr5 (169-356)||(34111320-34111503)
chr5 (172-321)||(2589387-2589543)
chr5 (231-325)||(38147500-38147595)
chr5 (231-356)||(4414578-4414704)
chr5 (166-355)||(23418326-23418518)
chr5 (181-355)||(2796370-2796548)
chr5 (181-355)||(2802531-2802709)
chr5 (156-333)||(18432470-18432659)
chr5 (231-322)||(34880919-34881010)
chr5 (231-333)||(41455254-41455357)
chr5 (201-355)||(42920603-42920763)
chr5 (173-333)||(11402978-11403139)
chr5 (231-355)||(22553715-22553841)
chr5 (181-356)||(28224403-28224587)
chr5 (201-355)||(41805397-41805549)
chr5 (201-321)||(2423201-2423327)
chr5 (201-277)||(40692882-40692958)
chr5 (285-356)||(6633660-6633732)
chr5 (181-237)||(19402721-19402777)
chr5 (156-353)||(25495450-25495661)
chr5 (167-259)||(34087819-34087913)
chr5 (201-274)||(33793076-33793150)
chr5 (302-356)||(12378752-12378808)
chr5 (201-245)||(6595407-6595451)
chr5 (239-355)||(7591089-7591204)
chr5 (201-344)||(14652827-14652964)
chr5 (155-242)||(733476-733564)
chr5 (181-245)||(23623482-23623546)
chr5 (293-328)||(691259-691294)
chr5 (154-244)||(38176025-38176115)
chr5 (154-244)||(38203249-38203339)
chr5 (208-328)||(39730640-39730770)
chr5 (182-245)||(40109086-40109149)
chr5 (201-274)||(5175200-5175273)
chr5 (285-354)||(36568073-36568143)
chr5 (298-355)||(38176147-38176205)
chr5 (298-355)||(38203371-38203429)
chr5 (188-245)||(691156-691213)
chr5 (201-237)||(6719051-6719087)
chr5 (181-245)||(17131651-17131715)
chr5 (231-272)||(18845956-18845999)
chr5 (181-245)||(32243946-32244010)
chr5 (201-245)||(42920134-42920178)
[»] chr7 (44 HSPs)
chr7 (156-355)||(27456685-27456893)
chr7 (167-355)||(43202772-43202963)
chr7 (156-355)||(29211141-29211340)
chr7 (154-355)||(26956200-26956403)
chr7 (156-356)||(27100121-27100328)
chr7 (156-356)||(27177975-27178182)
chr7 (181-356)||(524407-524594)
chr7 (170-359)||(11833999-11834193)
chr7 (181-355)||(47646310-47646486)
chr7 (156-356)||(40849213-40849428)
chr7 (205-356)||(46147567-46147724)
chr7 (183-328)||(26208834-26208985)
chr7 (209-353)||(31011332-31011487)
chr7 (166-356)||(1812836-1813034)
chr7 (188-333)||(48643167-48643312)
chr7 (231-351)||(2734686-2734809)
chr7 (228-352)||(11399482-11399609)
chr7 (231-333)||(20334973-20335076)
chr7 (187-356)||(23410773-23410944)
chr7 (211-302)||(47484185-47484276)
chr7 (231-355)||(6879696-6879822)
chr7 (156-245)||(26587717-26587802)
chr7 (231-355)||(7697649-7697780)
chr7 (231-325)||(8117881-8117976)
chr7 (217-321)||(17492980-17493091)
chr7 (217-321)||(17560123-17560234)
chr7 (290-355)||(33435339-33435405)
chr7 (286-359)||(36550818-36550892)
chr7 (176-356)||(22298888-22299080)
chr7 (211-307)||(23675775-23675872)
chr7 (231-356)||(35495763-35495891)
chr7 (231-348)||(8568148-8568269)
chr7 (181-245)||(31287316-31287380)
chr7 (173-243)||(30855574-30855645)
chr7 (285-354)||(16535402-16535472)
chr7 (285-354)||(16630190-16630260)
chr7 (211-355)||(25007618-25007763)
chr7 (231-356)||(27214790-27214917)
chr7 (292-328)||(21237432-21237468)
chr7 (201-321)||(29628606-29628737)
chr7 (182-237)||(24477838-24477893)
chr7 (201-353)||(22700900-22701061)
chr7 (181-245)||(35819645-35819709)
chr7 (201-245)||(37376244-37376288)
[»] chr4 (49 HSPs)
chr4 (181-355)||(46471784-46471959)
chr4 (205-327)||(49641220-49641343)
chr4 (203-356)||(13715071-13715225)
chr4 (201-353)||(3666638-3666792)
chr4 (212-359)||(8312235-8312385)
chr4 (201-356)||(18399380-18399537)
chr4 (201-355)||(32222874-32223037)
chr4 (201-359)||(4689034-4689194)
chr4 (210-333)||(35232874-35232998)
chr4 (181-356)||(48338700-48338882)
chr4 (155-356)||(41312194-41312398)
chr4 (231-355)||(20986757-20986883)
chr4 (181-255)||(54273473-54273547)
chr4 (231-339)||(45464530-45464639)
chr4 (181-274)||(23625454-23625553)
chr4 (188-356)||(29233106-29233281)
chr4 (156-355)||(36105983-36106196)
chr4 (201-260)||(48685208-48685267)
chr4 (231-359)||(41325749-41325879)
chr4 (181-275)||(25686025-25686124)
chr4 (231-356)||(21069413-21069542)
chr4 (156-329)||(8485063-8485248)
chr4 (285-354)||(18536314-18536384)
chr4 (286-354)||(6102246-6102314)
chr4 (201-245)||(45983811-45983855)
chr4 (294-333)||(7763762-7763801)
chr4 (239-348)||(18319193-18319304)
chr4 (239-348)||(18396685-18396796)
chr4 (212-269)||(10777946-10778004)
chr4 (292-328)||(15724237-15724273)
chr4 (211-259)||(17845323-17845371)
chr4 (170-233)||(27743826-27743890)
chr4 (285-328)||(29701019-29701062)
chr4 (156-230)||(45226836-45226911)
chr4 (180-242)||(4054356-4054418)
chr4 (203-245)||(5121947-5121989)
chr4 (180-242)||(18319119-18319181)
chr4 (180-242)||(18396808-18396870)
chr4 (156-245)||(23449498-23449588)
chr4 (188-245)||(15724313-15724370)
chr4 (188-260)||(23119852-23119929)
chr4 (233-325)||(48602110-48602203)
chr4 (201-233)||(3999246-3999278)
chr4 (181-245)||(19753075-19753139)
chr4 (181-245)||(19786667-19786731)
chr4 (181-245)||(28148244-28148308)
chr4 (231-356)||(41260465-41260593)
chr4 (181-245)||(45150530-45150594)
chr4 (201-245)||(48292989-48293033)
[»] chr6 (22 HSPs)
chr6 (181-359)||(30752924-30753103)
chr6 (201-356)||(12108149-12108305)
chr6 (188-343)||(13531823-13531984)
chr6 (201-359)||(19134668-19134832)
chr6 (181-356)||(29048903-29049074)
chr6 (201-328)||(7169650-7169778)
chr6 (287-355)||(32190339-32190408)
chr6 (154-255)||(6267463-6267565)
chr6 (262-353)||(891974-892066)
chr6 (231-351)||(17306719-17306839)
chr6 (235-321)||(8064880-8064968)
chr6 (156-324)||(14564813-14564987)
chr6 (181-328)||(4577477-4577625)
chr6 (156-356)||(9686405-9686613)
chr6 (181-245)||(11417519-11417583)
chr6 (183-302)||(13858948-13859068)
chr6 (182-356)||(22414165-22414343)
chr6 (286-355)||(16971410-16971480)
chr6 (204-259)||(15837261-15837316)
chr6 (217-328)||(6400212-6400325)
chr6 (250-321)||(31945075-31945147)
chr6 (285-333)||(24644609-24644657)
[»] chr2 (30 HSPs)
chr2 (181-327)||(12041140-12041287)
chr2 (181-356)||(15320139-15320316)
chr2 (156-356)||(27301015-27301218)
chr2 (188-325)||(10242306-10242444)
chr2 (235-356)||(22014317-22014439)
chr2 (181-356)||(41166511-41166698)
chr2 (156-355)||(1331351-1331556)
chr2 (182-356)||(13194259-13194445)
chr2 (181-318)||(43452517-43452650)
chr2 (181-234)||(36500165-36500218)
chr2 (200-356)||(1536941-1537098)
chr2 (181-359)||(11050949-11051135)
chr2 (182-241)||(28790926-28790985)
chr2 (294-359)||(11678352-11678417)
chr2 (180-245)||(11678459-11678524)
chr2 (294-359)||(11695830-11695895)
chr2 (286-355)||(20496746-20496815)
chr2 (181-245)||(5862204-5862268)
chr2 (156-259)||(30761134-30761237)
chr2 (231-333)||(31719678-31719782)
chr2 (286-356)||(27898689-27898761)
chr2 (201-245)||(11695937-11695981)
chr2 (154-233)||(29172169-29172248)
chr2 (158-259)||(36965537-36965643)
chr2 (231-333)||(44085870-44085973)
chr2 (231-312)||(12884775-12884857)
chr2 (201-234)||(12841833-12841866)
chr2 (285-333)||(21254478-21254527)
chr2 (180-228)||(17763190-17763238)
chr2 (285-333)||(21480477-21480525)
[»] chr8 (31 HSPs)
chr8 (201-333)||(27674900-27675033)
chr8 (155-359)||(28441823-28442039)
chr8 (201-356)||(12193029-12193186)
chr8 (201-356)||(12437457-12437614)
chr8 (181-356)||(13325657-13325836)
chr8 (231-356)||(1271490-1271617)
chr8 (231-333)||(22810787-22810890)
chr8 (231-359)||(24681686-24681817)
chr8 (231-333)||(12659869-12659971)
chr8 (255-355)||(18754951-18755049)
chr8 (203-330)||(3155596-3155723)
chr8 (180-274)||(4785669-4785764)
chr8 (182-357)||(15452210-15452393)
chr8 (234-356)||(9012436-9012561)
chr8 (182-277)||(28072679-28072775)
chr8 (156-227)||(29914017-29914089)
chr8 (182-269)||(35687879-35687968)
chr8 (181-232)||(11017430-11017481)
chr8 (201-333)||(44024557-44024695)
chr8 (181-232)||(44334585-44334636)
chr8 (255-333)||(28801954-28802032)
chr8 (239-328)||(30942946-30943036)
chr8 (201-245)||(31477772-31477816)
chr8 (285-333)||(41346291-41346339)
chr8 (294-333)||(40436818-40436857)
chr8 (295-355)||(44337105-44337167)
chr8 (188-257)||(40436895-40436964)
chr8 (201-245)||(11219445-11219489)
chr8 (205-245)||(30252663-30252703)
chr8 (292-328)||(31477853-31477889)
chr8 (181-245)||(36340320-36340384)
[»] chr3 (33 HSPs)
chr3 (156-333)||(52632511-52632696)
chr3 (177-359)||(45629546-45629725)
chr3 (180-351)||(26758591-26758769)
chr3 (188-333)||(44651343-44651489)
chr3 (154-234)||(4280783-4280863)
chr3 (181-333)||(42362758-42362921)
chr3 (231-353)||(55467241-55467365)
chr3 (180-333)||(48169053-48169212)
chr3 (285-356)||(2832039-2832111)
chr3 (188-343)||(8557323-8557478)
chr3 (201-333)||(17144302-17144434)
chr3 (209-333)||(54122703-54122827)
chr3 (183-359)||(45914757-45914932)
chr3 (181-359)||(22255837-22256026)
chr3 (201-259)||(4670028-4670086)
chr3 (231-359)||(8355682-8355812)
chr3 (285-359)||(25918907-25918981)
chr3 (200-333)||(50578555-50578700)
chr3 (292-359)||(4280641-4280709)
chr3 (231-357)||(22472663-22472791)
chr3 (231-333)||(37045692-37045795)
chr3 (285-355)||(51660655-51660726)
chr3 (285-356)||(2565985-2566058)
chr3 (203-245)||(51660562-51660604)
chr3 (292-333)||(38651690-38651731)
chr3 (181-234)||(51661911-51661964)
chr3 (201-245)||(2565860-2565904)
chr3 (231-354)||(10481218-10481341)
chr3 (285-329)||(46253105-46253149)
chr3 (308-355)||(4639195-4639242)
chr3 (171-237)||(34185425-34185492)
chr3 (156-237)||(5640238-5640320)
chr3 (201-242)||(2831954-2831995)
[»] scaffold0001 (2 HSPs)
scaffold0001 (231-354)||(428004-428129)
scaffold0001 (292-325)||(405826-405859)
[»] scaffold0688 (4 HSPs)
scaffold0688 (231-355)||(3125-3255)
scaffold0688 (201-355)||(1531-1702)
scaffold0688 (298-355)||(4792-4849)
scaffold0688 (298-355)||(8100-8158)
[»] scaffold0664 (1 HSPs)
scaffold0664 (235-355)||(6339-6461)
[»] scaffold0204 (2 HSPs)
scaffold0204 (181-356)||(26222-26404)
scaffold0204 (156-245)||(14999-15088)
[»] scaffold0210 (2 HSPs)
scaffold0210 (201-242)||(18958-18999)
scaffold0210 (201-242)||(26850-26891)
[»] scaffold0015 (1 HSPs)
scaffold0015 (181-245)||(62858-62922)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 154 - 359
Target Start/End: Complemental strand, 25507437 - 25507231
Alignment:
Q  154 gtatttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25507437 gtatttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaaccaaaccacaacataa 25507338  T
Q  254 gaa-aaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttc 352  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  25507337 gaaaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatgaaaacttttataaaatgacattttttgttgttgttaagttttttc 25507238  T
Q  353 tttgttt 359  Q
    |||||||    
T  25507237 tttgttt 25507231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 35979844 - 35980000
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    |||||||||||||||||||||  |||||||||||||| |||||| |||||||||||||| ||||||||||| |||||| | ||  | |||| ||||||||    
T  35979844 tttggtttggtttgcggttttctttttaccaaccaaaccaaaccgcaacataagaaaaacactaattaaatctatgtcacctagacaaatactcatagaa 35979943  T
Q  300 actcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    ||||||||||||||||||| ||||||||| |||||  | |||||||||||||||||||    
T  35979944 actcaatggaaacttttat-aaatgacatattttttctcttgttaagtttcttctttg 35980000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 6248612 - 6248430
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatat 274  Q
    |||||||| ||||||||   ||||||| ||||||||||||| |||||||||||| || |||||||     ||| |||||||||| |||||||||||||||    
T  6248612 ttttttacccaaccgcatggtttggttcggtttgcggttttgattttaccaaccgaaccaaaccaaaccgcaatataagaaaaacactaattaaatatat 6248513  T
Q  275 gtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     || | ||  |||||| ||||||||| |||||||||||||| |||||||||||| |||||  | |||||||||||||||||||    
T  6248512 atcacttagaccaatactcatagaaattcaatggaaactttaataaaatgacatatttttcctcttgttaagtttcttctttg 6248430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 359
Target Start/End: Original strand, 6693646 - 6693830
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatata 273  Q
    ||||||||||||| ||||   ||||||| |||||| |||||| |||||| |||||||| |||||||     ||| |||||||||| ||||||||||||||    
T  6693646 attttttactcaatcgcatggtttggttaggtttgtggttttaattttatcaaccaaaccaaaccaaaccgcaatataagaaaaacactaattaaatata 6693745  T
Q  274 tgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttgttt 359  Q
    | || | |   |||||| |||||||||||||||| ||||||| |||||||||||||||||  | ||||||||||||||||||||||    
T  6693746 tatcacttggaccaatactcatagaaactcaatgaaaactttaataaaatgacatttttt-ctcttgttaagtttcttctttgttt 6693830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 9330910 - 9330755
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaac 301  Q
    ||||||||||||  |||| |||||| |||||||||||||| | |||||||||||||| | |||||||| ||||||| | ||  |||||| ||||||||||    
T  9330910 tggtttggtttgttgtttatattttcccaaccaaatcaaatcgcaacataagaaaaacattaattaaacatatgtcacctagaccaatactcatagaaac 9330811  T
Q  302 tcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    |||||| ||||||||||||||||| || |||||  | ||||||||||| |||||||    
T  9330810 tcaatgaaaacttttataaaatgatatattttttcttttgttaagtttgttctttg 9330755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 18834100 - 18834290
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc----------aaatcaaaccacaacataagaaaaa-actaattaaa 269  Q
    ||||||||||||| ||| | |||| ||||||||| |||||||||||||||||||          ||| ||||||||||||||||||||| ||||||||||    
T  18834100 ttttttactcaactgcatattttgatttggtttgaggtttttattttaccaaccgaaccaaatcaaaccaaaccacaacataagaaaaacactaattaaa 18834199  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||| | ||  |||||| | ||| |||||||||| |||||||||||||||||||| |||||  | ||| ||||||| ||||||||||    
T  18834200 tatatgtcacctagaccaatactaataaaaactcaatgaaaacttttataaaatgacatattttttctcttgataagttttttctttgttt 18834290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 191 - 356
Target Start/End: Original strand, 40094730 - 40094892
Alignment:
Q  191 aaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaat 289  Q
    |||||||  |||||||| ||||||||||||| |||||||||||||||     |||||| |||||||||| ||||||||||||||| || | | | |||||    
T  40094730 aaccgcatgatttggttcggtttgcggttttcattttaccaaccaaa-----ccacaatataagaaaaacactaattaaatatatatcacttgaaccaat 40094824  T
Q  290 attcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    | |||||||||||||||| ||||||| |||||||||||| || ||  | |||||||||||||||||||    
T  40094825 actcatagaaactcaatgaaaactttaataaaatgacatattatttctcttgttaagtttcttctttg 40094892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 25507592 - 25507515
Alignment:
Q  8 tattgtcgtttcctcaaagatcgtttgtatatctttctttgtttagacatttagttgttgtattctaactaggggtgtt 86  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  25507592 tattgtcgtttcctcaaagatcgtt-gtatatctttctttgtttggacattcagttgttgtattctaactaggggtgtt 25507515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 355
Target Start/End: Complemental strand, 17989610 - 17989402
Alignment:
Q  155 tatttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caa 248  Q
    ||||||||||  || |||||| |||| |||||||||||||| || | ||||||||||||| |||| || ||||||| ||||||| || ||||     |||    
T  17989610 tatttgatttgtatgtattcatatcacttttttactcaaccacatagtttggtttggtttacggtattcattttacgaaccaaaccataccagaccgcaa 17989511  T
Q  249 cataagaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgac-attttttgttgttgttaagt 346  Q
    |||||||||||  | |||||||| |||||| | ||  ||||||  ||||||||||||||||||||||||||||||||||  |||||| || ||| |||||    
T  17989510 cataagaaaaactttaattaaatctatgtcacctagaccaatacacatagaaactcaatggaaacttttataaaatgactttttttttttcttgctaagt 17989411  T
Q  347 ttcttcttt 355  Q
    |||||||||    
T  17989410 ttcttcttt 17989402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 333
Target Start/End: Complemental strand, 35375707 - 35375548
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca------caacataagaaaaa-actaattaaatata 273  Q
    |||||||||||||||||   ||| |||||||||||||||||||||||||||||| || |||||||      |||||||||||||| | |||||||| |||    
T  35375707 ttttttactcaaccgcatggttttgtttggtttgcggtttttattttaccaacctaaccaaaccaaactgccaacataagaaaaacattaattaaacata 35375608  T
Q  274 tgtc-tcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    || | || | | |||||| | ||||||||||||||||||||||||||||||||||| ||||    
T  35375607 tgccatcttga-ccaatacttatagaaactcaatggaaacttttataaaatgacatatttt 35375548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 356
Target Start/End: Original strand, 15881779 - 15881920
Alignment:
Q  216 ggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaat-ggaaact 313  Q
    ||||||||| || |||||  ||||||||| |||||||||||||| ||||||||||||||| || | ||   ||||| |||| |||| ||||| |||||||    
T  15881779 ggtttttatatttccaacttaatcaaaccgcaacataagaaaaacactaattaaatatat-tcacctacatcaatactcattgaaagtcaattggaaact 15881877  T
Q  314 tttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
    ||||||||||||| |||||| || |||||||||||||||||||    
T  15881878 tttataaaatgacttttttttttcttgttaagtttcttctttg 15881920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 356
Target Start/End: Original strand, 23474649 - 23474829
Alignment:
Q  170 tattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaaa 269  Q
    |||||| |||||||||||| ||||| ||   ||||||| | ||||||||||||||||||||||||||| |||||| ||||||||| |||||||           
T  23474649 tattcagatcattttttacccaacctcatggtttggttcgatttgcggtttttattttaccaaccaaaccaaaccgcaacataag-aaaaact------- 23474740  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaac-ttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     ||||||| | ||  |||||| ||||||||| ||||||||||| |||||||||||||||| |||||  | ||||||| |||||||||||    
T  23474741 catatgtcgcctagaccaatactcatagaaattcaatggaaactttttataaaatgacatattttttctcttgttaattttcttctttg 23474829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 333
Target Start/End: Original strand, 25865546 - 25865700
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtct 278  Q
    |||||||||||||||||||  || ||||||||||||  ||||||||||| ||||| ||  ||||| |||||||| ||||| ||||||||||  ||| ||     
T  25865546 attttttactcaaccgcacggttcggtttggtttgcaatttttattttatcaaccgaactaaaccgcaacataaaaaaaacactaattaaacttatttcc 25865645  T
Q  279 cataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||||||||| ||||||| |||  |||  ||||||||| ||||||||| ||||    
T  25865646 cataatccaatactcatagatacttgatgagaacttttatcaaatgacatgtttt 25865700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 356
Target Start/End: Original strand, 26344596 - 26344774
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaa-aaactaattaaatatatgtct 278  Q
    ||||||||||||||||||   ||||||| ||||||| ||||| |||||||||||| || |||||| ||| |||||||| | ||||||| ||||||| ||     
T  26344596 attttttactcaaccgcatggtttggttcggtttgcagttttgattttaccaaccgaaccaaaccgcaatataagaaatacactaattgaatatatatcg 26344695  T
Q  279 cataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
      |   |||||| ||||||||||| ||||  |||||| |||||||||||| |||||  | |||||||||||||||||||    
T  26344696 tttggaccaatactcatagaaactaaatgagaactttaataaaatgacatattttttctcttgttaagtttcttctttg 26344774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 9961788 - 9961921
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacat-aagaaaaaactaattaaatatatgtctc 279  Q
    |||||||||||||||||  |||||||||| ||||| ||||| ||||||| ||||||  |||||| || ||| || |||||| ||||||||| |||||| |    
T  9961788 ttttttactcaaccgcatgatttggtttgatttgctgttttcattttacgaaccaagccaaaccgcatcataaaaaaaaaattaattaaatttatgtcac 9961887  T
Q  280 ataatccaatattcatagaaactcaatggaaact 313  Q
     ||  |||||| ||||||||||||||||||||||    
T  9961888 ctagaccaatactcatagaaactcaatggaaact 9961921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 21685121 - 21685254
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    |||||| | |||||| ||||||||||||||||| | | ||||||||| ||||||||||| | |||||||| ||||||| | ||  |||||| | ||||||    
T  21685121 tttggtattgtttgcagtttttattttaccaactagaccaaaccacaccataagaaaaacattaattaaacatatgtcacctagaccaatacttatagaa 21685220  T
Q  300 actcaatggaaacttttataaaatgacatttttt 333  Q
    ||||||| || |||||||||||||||||| ||||    
T  21685221 actcaatagacacttttataaaatgacatatttt 21685254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 356
Target Start/End: Original strand, 36202988 - 36203175
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc----------aaatcaaaccacaacataagaaaaa-actaattaaa- 269  Q
    ||||||||||||||||   ||||||||||||||||| ||| ||||||||||||          ||| |||||| |||||||| ||||| ||||||||||     
T  36202988 tttttactcaaccgcatggtttggtttggtttgcggctttcattttaccaaccgaaccataccaaaccaaaccgcaacataataaaaacactaattaaaa 36203087  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    | |||||| | ||  |||||| | ||||||||||||||||||||||||||||||||||| ||| |  | |||||||||||||||||||    
T  36203088 tctatgtcacctagaccaatactaatagaaactcaatggaaacttttataaaatgacatatttgttctcttgttaagtttcttctttg 36203175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 3937273 - 3937121
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaaa 300  Q
    ||||||| ||||||||||||| |||||| |||||||| |||||  ||| |||| |||| ||||||||||| ||| ||   ||  |||||| |||||||||    
T  3937273 tttggttcggtttgcggttttgattttagcaaccaaaccaaactgcaatataaaaaaacactaattaaatgtatatcatttataccaatactcatagaaa 3937174  T
Q  301 ctcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttcttt 355  Q
     |||||  ||||||| || |||||||||||||  || ||||||||||||||||||    
T  3937173 ttcaataaaaactttaattaaatgacattttt--ttcttgttaagtttcttcttt 3937121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 356
Target Start/End: Original strand, 10847046 - 10847253
Alignment:
Q  156 atttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttatttta-----ccaaccaaatcaaaccacaaca 250  Q
    ||||| ||| ||| ||||| ||| | ||||||||||||||||  |||||||||  |||| |||||||||||||     ||||||||| |||||| |||||    
T  10847046 atttggtttggatgtattcgaataactttttactcaaccgcatgatttggtttaatttgtggtttttattttaccagcccaaccaaaccaaaccgcaaca 10847145  T
Q  251 taagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgaca--ttttttgttgttgttaagtt 347  Q
    ||||||||| | || |||| ||||||||  |||  | |||| | |||| |||||||||| |||||||||||||||| |  | |||| || ||||||||||    
T  10847146 taagaaaaacaatacttaattatatgtcatatagacaaatactaatagcaactcaatgggaacttttataaaatgataagtattttctt-ttgttaagtt 10847244  T
Q  348 tcttctttg 356  Q
    |||||||||    
T  10847245 tcttctttg 10847253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 8269129 - 8269002
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    |||||||| ||||| ||||| |||||||| | ||||||||||||| ||   ||  |||||||| ||| |||||||||||||||||||||||||||||||     
T  8269129 aaccaaataaaaccgcaacacaagaaaaacattaattaaatatatatcatctagaccaatatttatataaactcaatggaaacttttataaaatgacata 8269030  T
Q  329 tttttgttgttgttaagtttcttctttg 356  Q
    | |||  | |||||||||||||||||||    
T  8269029 tattttcttttgttaagtttcttctttg 8269002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 327
Target Start/End: Complemental strand, 50471612 - 50471485
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    ||||||| ||||||||||||| |||||| |||| |||  ||||| ||| |||||||||| || || ||||||||| || | ||  |||||| ||||||||    
T  50471612 tttggttcggtttgcggttttgattttatcaactaaactaaaccgcaatataagaaaaacacgaaataaatatatatcacctagaccaatactcatagaa 50471513  T
Q  300 actcaatggaaacttttataaaatgaca 327  Q
    ||||||||| |||||| |||||||||||    
T  50471512 actcaatggtaactttaataaaatgaca 50471485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 329
Target Start/End: Complemental strand, 16063376 - 16063195
Alignment:
Q  156 atttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caac 249  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||  ||||||||  |||||||||||| |||||||||||| || |||||||     |||     
T  16063376 atttgatttagatgtattcgaataatttttttactcaaccgcatgatttggttcagtttgcggttttgattttaccaacccaaccaaaccaaatcgcaat 16063277  T
Q  250 ataagaaaaaac--taattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    | || || ||||  ||||||||||||| |    ||| |||||| ||||||||| ||||| |||||||| |||||||||||||    
T  16063276 aaaaaaagaaacattaattaaatatatttaatctaaaccaatactcatagaaattcaatcgaaactttaataaaatgacatt 16063195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 333
Target Start/End: Original strand, 16537379 - 16537524
Alignment:
Q  183 ttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcata 282  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||     |||||| || ||||| |||| |||||||||| |||||     ||    
T  16537379 ttttcctcaaccgcatgatttggtttggtttgcggtttttattttaccaac-----caaaccgcaccataaaaaaacactaattaaacatatgcaatgta 16537473  T
Q  283 atccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
      |||||| || |||||| |||||| |||||||| ||||||||||| ||||    
T  16537474 gaccaatactcgtagaaagtcaatgaaaacttttgtaaaatgacatatttt 16537524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 52829343 - 52829254
Alignment:
Q  170 tattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa 259  Q
    |||||| ||||||||||||||||||||  | ||||||| | ||||| ||||||||||||| |||| || |||||| ||||||||||||||    
T  52829343 tattcagatcattttttactcaaccgcgtagtttggttcgatttgcagtttttattttactaaccgaaccaaaccgcaacataagaaaaa 52829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 325
Target Start/End: Original strand, 50951556 - 50951700
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaa-aaaactaattaaatatatgtctca 280  Q
    |||||| |||||||||   ||||||| |||| |||||||||||||||| ||||||||||||||||||||||| || ||  |||||| ||  ||  || |     
T  50951556 tttttattcaaccgcatggtttggttcggttggcggtttttattttactaaccaaatcaaaccacaacataataacaacgctaattgaacctaactcacc 50951655  T
Q  281 taatccaatattcatagaaactcaatggaaacttttataaaatga 325  Q
     |  |||||| ||||||||||||||| ||| ||||||||||||||    
T  50951656 aagaccaatactcatagaaactcaattgaagcttttataaaatga 50951700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 18310450 - 18310323
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| |||||| ||||| | |||||||||| |||||||   ||| |||||| | ||||||| |||||| ||||||||||||||||||||     
T  18310450 aaccaaaccaaaccgcaacattagaaatacactaattaaacatatgtcatttaaaccaatacttatagaaattcaatgaaaacttttataaaatgacatg 18310351  T
Q  329 tttttgttgttgttaagtttcttctttg 356  Q
    |||||  | ||| |||||||||||||||    
T  18310350 ttttttctcttgataagtttcttctttg 18310323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 25559561 - 25559745
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttacc-----aaccaaatcaaaccacaacataagaaaaa-actaattaaatatat 274  Q
    ||||||||||||||| |   ||||||| |||||| |||||| ||||||||     |||||||||||||| ||| |||||||||| | |||||||||||||    
T  25559561 ttttttactcaaccgtatggtttggttcggtttgtggttttgattttaccaaccaaaccaaatcaaaccgcaatataagaaaaacaataattaaatatat 25559660  T
Q  275 gtctcataatccaatattc--atagaaactcaatggaaacttttataaaatgacattttttgt-tgttgttaagtttcttctttg 356  Q
     ||   ||  |||||| ||  ||||||||||||||| || ||  |||||||||||| |||| | | |||||||||||||||||||    
T  25559661 atcatttataccaatactcgtatagaaactcaatgggaatttgaataaaatgacatattttatcttttgttaagtttcttctttg 25559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 27507051 - 27507238
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttacc----------aaccaaatcaaaccacaacataagaaaaa-actaattaaa 269  Q
    |||||||||||||||||   ||||||| ||||||||||||| ||||||||          ||||||| |||||| ||| |||||||||| ||||||||||    
T  27507051 ttttttactcaaccgcatgctttggttcggtttgcggttttgattttaccaactgaaccaaaccaaaccaaaccgcaatataagaaaaacactaattaaa 27507150  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt-tgttgttaagtttcttctttg 356  Q
    ||||| ||   ||   | ||| ||||||||| ||||| ||||||||  |||||||||||||||| | | ||||||||| |||||||||    
T  27507151 tatatatcatctagatcgatactcatagaaattcaattgaaactttagtaaaatgacattttttttctcttgttaagtctcttctttg 27507238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 11072971 - 11073082
Alignment:
Q  232 accaaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattt 330  Q
    |||||| |||||| ||||||||||||||  | || |||| |||| || | ||| |||||| | |||||||||||||  ||||||||||||||||||||||    
T  11072971 accaaaccaaaccgcaacataagaaaaatgttaaataaacatatctcacctaaaccaatacttatagaaactcaataaaaacttttataaaatgacattt 11073070  T
Q  331 tttgttgttgtt 342  Q
    ||| || |||||    
T  11073071 ttttttcttgtt 11073082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 35992157 - 35992322
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca----------caacataagaaaaa-actaattaaatatatgtctcataatccaat 289  Q
    ||||||||||||||| |||||  |||||||||||||| |||||||          ||||||||||| || ||||||||||| |||||| | ||  | |||    
T  35992157 tttggtttggtttgcagttttctttttaccaaccaaaccaaaccaaaccaaactgcaacataagaagaacactaattaaatctatgtcacctagacaaat 35992256  T
Q  290 attcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    | ||| ||||||| ||||||||||||||| ||||||||| |||||  | ||||||||||||||||||    
T  35992257 actcaaagaaacttaatggaaacttttat-aaatgacatattttttctcttgttaagtttcttcttt 35992322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 359
Target Start/End: Original strand, 52380331 - 52380463
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctca--taatccaatattcatagaaactcaatggaaacttttataaaatgaca 327  Q
    |||||||  ||||| ||| |||||||||| ||||||||||||||| | |||  ||  |||||| | ||||||| |||||  ||||||| |||||||||||    
T  52380331 aaccaaactaaaccccaatataagaaaaacactaattaaatatatatatcacctagaccaatacttatagaaattcaataaaaactttaataaaatgaca 52380430  T
Q  328 ttttttgt-tgttgttaagtttcttctttgttt 359  Q
    | |||| | | ||||||||||||||||||||||    
T  52380431 tattttttctcttgttaagtttcttctttgttt 52380463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 355
Target Start/End: Original strand, 9249669 - 9249815
Alignment:
Q  205 gtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactc 303  Q
    ||||||||||| |||| |||||||||||||||||     |||||||||||||||| | |||||||| ||||||| | ||  |||||| |||   ||||      
T  9249669 gtttggtttgctgtttatattttaccaaccaaat-----cacaacataagaaaaacattaattaaacatatgtcacctagaccaatactcaattaaacat 9249763  T
Q  304 aatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    || | |||||||||||||||||||| |||||  | ||||||||||||||||||    
T  9249764 aa-gaaaacttttataaaatgacatattttttctcttgttaagtttcttcttt 9249815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 382579 - 382448
Alignment:
Q  201 tttggtttggtttgcggtttttattttacc-----aaccaaatcaaacca-----caacataagaaaaa-actaattaaatatatgtctcataatccaat 289  Q
    ||||||| ||||||||||||||||||||||     ||||||||||| |||     |||||||||||||| ||||||||||| |||||| | ||  |||||    
T  382579 tttggttcggtttgcggtttttattttaccagccaaaccaaatcaatccaacttgcaacataagaaaaacactaattaaatctatgtcacttagaccaat 382480  T
Q  290 attcatagaaactcaatggaaacttttataaa 321  Q
      ||||| |||||||||| |||| ||||||||    
T  382479 gatcataaaaactcaatgaaaacatttataaa 382448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 34721330 - 34721449
Alignment:
Q  210 gtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatgg 308  Q
    |||||||||||||||||||||| |||||  || |  |||||||||||||| | ||| ||||| |||||| | ||| |||| | ||||||||||  || ||    
T  34721330 gtttgcggtttttattttaccagccaaactaatctgcaacataagaaaaacattaactaaatttatgtcacctaaaccaacactcatagaaacataaggg 34721429  T
Q  309 aaacttttataaaatgacat 328  Q
    | ||||||||| ||||||||    
T  34721430 agacttttatacaatgacat 34721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 27455576 - 27455642
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatag 297  Q
    |||||||||||||  ||||||||||||| ||||||||||| ||||||  ||| ||||||| ||||||    
T  27455576 aaccaaatcaaactgcaacataagaaaacactaattaaatttatgtcatatagtccaatactcatag 27455642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 36781724 - 36781802
Alignment:
Q  154 gtatttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaa 232  Q
    ||||||| ||| ||| |||||| |||| ||||||||||||||||   ||||||| ||||||||||||| |||| |||||    
T  36781724 gtatttggtttggatgtattcagatcaatttttactcaaccgcatggtttggttcggtttgcggttttgatttaaccaa 36781802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 12973994 - 12973921
Alignment:
Q  287 aatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||| |||||||| |  |||||||||||| |||||||||||| |||||  | ||||||||||||||||||||||    
T  12973994 aatactcatagaatcctaatggaaactttaataaaatgacatatttttccttttgttaagtttcttctttgttt 12973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 328
Target Start/End: Original strand, 26063808 - 26063909
Alignment:
Q  228 accaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgac 326  Q
    ||||| |||| |||||| ||| |||||||||| | ||||||||||||| || | ||   ||||| |||||||||||||||| ||||||| ||||||| ||    
T  26063808 accaaacaaaccaaaccgcaatataagaaaaacattaattaaatatatatcacctagagcaatactcatagaaactcaatgaaaactttaataaaataac 26063907  T
Q  327 at 328  Q
    ||    
T  26063908 at 26063909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 31451341 - 31451401
Alignment:
Q  199 aatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa 259  Q
    |||||||||  ||||||| ||||||||||| |||||||| |||||| |||||||| |||||    
T  31451341 aatttggttcagtttgcgatttttattttaacaaccaaaccaaaccgcaacataaaaaaaa 31451401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 3532557 - 3532636
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaa 260  Q
    ||||||| |||||||||   || | ||||||||||  ||||||||||| |||||||| |||||| |||||||| ||||||    
T  3532557 ttttttattcaaccgcattgttcgatttggtttgcaatttttattttatcaaccaaaccaaaccccaacataaaaaaaaa 3532636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 8165143 - 8165245
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    ||||||| |||||| |||||||| |||||  | ||||||| ||||||| | ||   ||||| ||||| |||||||||| ||  |||||||||||||||||    
T  8165143 aaccaaaccaaaccgcaacataataaaaatgttaattaaacatatgtcacctagatcaatactcatataaactcaatgaaattttttataaaatgacatt 8165242  T
Q  330 ttt 332  Q
    |||    
T  8165243 ttt 8165245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 44828416 - 44828374
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||||||||||||||| ||||||||||||    
T  44828416 tggtttggtttgtagtttttattttaccaatcaaatcaaacca 44828374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 45949096 - 45949138
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||| |||||||||||||||||||||||| || |||||||    
T  45949096 tggtttgatttgcggtttttattttaccaaccgaaccaaacca 45949138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 32909972 - 32910061
Alignment:
Q  234 caaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaa 322  Q
    |||| |||||| ||||||||||||||  | |||||||||||| || | ||   ||||| ||||||||||| |||| ||||||||||||||    
T  32909972 caaaccaaaccgcaacataagaaaaatgttaattaaatatatctcacctagatcaataatcatagaaacttaatgaaaacttttataaaa 32910061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 41751704 - 41751573
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattt 330  Q
    |||||||||||||  |||||||| |||  | ||||||||  ||| || |||| | ||||  ||||||||||||||   ||||||||||| ||| ||||||    
T  41751704 aaccaaatcaaacagcaacataaaaaatcattaattaaacctatttcacatagttcaatgctcatagaaactcaaaaaaaacttttatagaataacattt 41751605  T
Q  331 tttgt---tgttgttaagtttcttctttgttt 359  Q
    ||| |   | ||||||| ||||||||||||||    
T  41751604 tttttttctcttgttaattttcttctttgttt 41751573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 50311202 - 50311137
Alignment:
Q  205 gtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataaga-aaaaactaattaaa 269  Q
    |||||||||||||||||||||||| ||||| || |||||  |||||||| | ||| ||||||||||    
T  50311202 gtttggtttgcggtttttattttagcaaccgaaccaaactgcaacataaaagaaacactaattaaa 50311137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 185 - 354
Target Start/End: Complemental strand, 35727499 - 35727331
Alignment:
Q  185 ttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataa 283  Q
    |||||||||| ||  ||||||||  ||||||||||||| ||||| ||||||||||||||| ||||||| |||||| || ||||||| ||  ||| ||||     
T  35727499 ttactcaaccacatgatttggttcagtttgcggtttttgttttatcaaccaaatcaaaccgcaacatacgaaaaacacaaattaaacat--gtcacatat 35727402  T
Q  284 tccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctt 354  Q
     |||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||||||||| |||||    
T  35727401 accaatattcatagaaactcaatggtaacttttataaaatgacatgtttttttattgttaagttttttctt 35727331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 356
Target Start/End: Original strand, 34111320 - 34111503
Alignment:
Q  169 atattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaa 268  Q
    ||||||| ||||||||||||| ||| |||    |||||| |||||| | |||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  34111320 atattcagatcattttttacttaactgca-tggttggttcggtttgtgatttttattttaccaaccaaaccaaaccgcaacataagaaaaaattaattaa 34111418  T
Q  269 atatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
    | |||| || | ||| | |||| ||||  |||||||||||| ||||||||||||||||||||||  || |||||||||||||||||||    
T  34111419 acatatatcacctaaactaatactcat-taaactcaatggacacttttataaaatgacattttt--ttcttgttaagtttcttctttg 34111503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 2589543 - 2589387
Alignment:
Q  172 ttcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaac-----caaatcaaaccacaacataagaaaaa-actaa 264  Q
    ||||||||| |||||||||| ||||||   ||||||| ||||| | |||||||||||||||||     | ||||||||| |||||||||||||| |||||    
T  2589543 ttcaaatcacttttttactctaccgcatggtttggttcggtttccagtttttattttaccaactgaaccgaatcaaaccgcaacataagaaaaacactaa 2589444  T
Q  265 ttaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaa 321  Q
    |||||||||||||   ||  |||||| ||||||||||| ||||||||||||||||||    
T  2589443 ttaaatatatgtcatctacgccaatactcatagaaactaaatggaaacttttataaa 2589387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 38147595 - 38147500
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatga 325  Q
    ||||||| |||||| |||||||||||||| |||||||||| || |||| ||||  ||||||||||||||||||||||| |||||||||||||||||    
T  38147595 aaccaaaccaaaccccaacataagaaaaacactaattaaacatgtgtcacatagaccaatattcatagaaactcaatgaaaacttttataaaatga 38147500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 4414704 - 4414578
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    ||||||| ||||| ||||||||||||||| | |||||||| |||||||  |||| |||||| | |||||||||||||| |||||||||||||||||  ||    
T  4414704 aaccaaaccaaactacaacataagaaaaacattaattaaacatatgtcatataaaccaatacttatagaaactcaatgaaaacttttataaaatgatttt 4414605  T
Q  330 ttttgttgttgttaagtttcttctttg 356  Q
    ||||  | ||| |||||||||||||||    
T  4414604 tttttctcttgataagtttcttctttg 4414578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 355
Target Start/End: Complemental strand, 23418518 - 23418326
Alignment:
Q  166 gatatattcaaatcatttt-ttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-acta 263  Q
    |||||||||  |||||||| ||||||||||||    ||||||| |||||| ||||||||||||||| ||| || |||||| |||||||||||||| | ||    
T  23418518 gatatattcggatcattttattactcaaccgcgtggtttggttcggtttgaggtttttattttaccgaccgaaccaaaccgcaacataagaaaaacatta 23418419  T
Q  264 attaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    |||||  ||||||| | ||  |||| | ||||||||||  |||| |||||| |||||| |||||| |||||  | ||||||||||||||||||    
T  23418418 attaatgatatgtcacctagaccaacactcatagaaacaaaatgcaaacttctataaactgacatattttttctcttgttaagtttcttcttt 23418326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 355
Target Start/End: Original strand, 2796370 - 2796548
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaa--tatatgtc 277  Q
    ||||||||| |||||||   |||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||| |||    
T  2796370 ttttttacttaaccgcatggtttgtttcagtttgtggtttttattttaccaaccaaatcaaaccacaacataagaaaaacactaatttaacctataagtc 2796469  T
Q  278 tcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
       ||  | |||| ||||| |||||||| ||||||||| |||||||||| | |||||  | ||||||| ||||||||||    
T  2796470 atctagactaatactcataaaaactcaacggaaactttgataaaatgacgtattttttctcttgttaaatttcttcttt 2796548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 355
Target Start/End: Original strand, 2802531 - 2802709
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaa--tatatgtc 277  Q
    ||||||||| |||||||   |||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||| |||    
T  2802531 ttttttacttaaccgcatggtttgtttcagtttgtggtttttattttaccaaccaaatcaaaccacaacataagaaaaacactaatttaacctataagtc 2802630  T
Q  278 tcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
       ||  |||||| ||||| |||||||| | ||||||| |||||||||| | |||||  | ||||||| ||||||||||    
T  2802631 atctagaccaatactcataaaaactcaacgaaaactttgataaaatgacgtattttttctcttgttaaatttcttcttt 2802709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 333
Target Start/End: Complemental strand, 18432659 - 18432470
Alignment:
Q  156 atttgatttagatatattcaaatcattttt-tactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc-----aaatcaaacca---- 245  Q
    ||||||||| ||| ||||  ||| |||||| || ||||||||| | |||||||||||||||||||||||||||| |||||     |||||||||||        
T  18432659 atttgatttggatgtatttgaattatttttgtattcaaccgcatagtttggtttggtttgcggtttttattttatcaaccgaaccaaatcaaaccaaacc 18432560  T
Q  246 -caacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
     |||||||| ||||| | ||||||| | |||||| | ||  |||||| ||||||||| |||||| |||||||||||||||||||| ||||    
T  18432559 gcaacataaaaaaaacattaattaagtctatgtcacctataccaatactcatagaaaatcaatgaaaacttttataaaatgacatatttt 18432470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 34880919 - 34881010
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaa 322  Q
    |||||||||||||| |||||||||||||| | |||||||||||||| | | ||| |||||| ||||| |||||||||||||||||||||||||    
T  34880919 aaccaaatcaaaccgcaacataagaaaaacattaattaaatatatgccacttaaaccaatactcata-aaactcaatggaaacttttataaaa 34881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 41455357 - 41455254
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    ||||||||| |||| ||| |||||||||| ||||||||||||||| || | |   |||||| |||||||||||||||||||||||| ||||||||||||     
T  41455357 aaccaaatcgaaccgcaatataagaaaaacactaattaaatatatatcacttggaccaatactcatagaaactcaatggaaactttaataaaatgacata 41455258  T
Q  330 tttt 333  Q
    ||||    
T  41455257 tttt 41455254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 42920603 - 42920763
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaac----caaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatccaatattcat 295  Q
    ||||||||||||||||||||||||||||| | |    |||| |||||  ||||||||||||||  | |||||||||||||||   ||   || || ||||    
T  42920603 tttggtttggtttgcggtttttattttacgatcgaatcaaaccaaactgcaacataagaaaaactttaattaaatatatgtcatctagatcactactcat 42920702  T
Q  296 agaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    |||||||||||  |||||||||||||||||||| |||||  | ||||||||||||||||||    
T  42920703 agaaactcaattaaaacttttataaaatgacatattttttctcttgttaagtttcttcttt 42920763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 333
Target Start/End: Complemental strand, 11403139 - 11402978
Alignment:
Q  173 tcaaatcatttt-ttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaat 270  Q
    |||||||||||| |||||||||| ||   |||| ||| || |||||||||||||||||||||| || |||||| ||||||||||||||   ||||||||     
T  11403139 tcaaatcattttcttactcaaccacatg-tttgatttcgtctgcggtttttattttaccaaccgaaccaaaccgcaacataagaaaaatgttaattaaac 11403041  T
Q  271 atatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||| || | ||  || ||| ||||| ||| ||||||||||||| ||||||||||||| ||||    
T  11403040 atatctcacctagaccgatactcatataaattcaatggaaacttgtataaaatgacatatttt 11402978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 22553841 - 22553715
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| |||||||||||||| |||||||||| |||| || | ||   ||||| |||||||||||||||  |||||| |||||||||||||     
T  22553841 aaccaaaccaaaccgcaacataagaaaaacactaattaaacatatctcacctagatcaatactcatagaaactcaattaaaacttctataaaatgacata 22553742  T
Q  329 tttttgttgttgttaagtttcttcttt 355  Q
    |||||  | ||||||||||||||||||    
T  22553741 ttttttctcttgttaagtttcttcttt 22553715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 28224403 - 28224587
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaa-aactaattaaatatat 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||| |||||||||||| || |||||||     ||| |||||||||  |||||||||||||||    
T  28224403 ttttttactcaactgcatagtttggtttggtttgcggttttgattttaccaaccgaaccaaaccaaactgcaatataagaaaaccactaattaaatatat 28224502  T
Q  275 gtctcataatccaatattcatagaaactcaatggaaactttt-ataaaatgac--attttttgttgttgttaagtttcttctttg 356  Q
     ||   ||   ||||| ||||||||| |||||  ||| |||| ||||||||||  |||||||  | |||||||||||||||||||    
T  28224503 atcatctagatcaataatcatagaaattcaattcaaaattttaataaaatgacatatttttttcttttgttaagtttcttctttg 28224587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 41805397 - 41805549
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaaca-taagaaaaa-actaattaaatatatgtctcataatccaatattcataga 298  Q
    |||||||||||||||||||||||||||| ||||||||     || ||||| ||||||| | | |||||||  ||||||| | ||  |||||| | |||||    
T  41805397 tttggtttggtttgcggtttttattttatcaaccaaa-----ccgcaacaataagaaagacattaattaagcatatgtcacctagaccaatacttataga 41805491  T
Q  299 aactcaatggaaacttttataaaatgaca-ttttttgttgttgttaagtttcttcttt 355  Q
    |||||||||||||||||||||||||||||  |||||  | ||| ||||||||||||||    
T  41805492 aactcaatggaaacttttataaaatgacacattttttctcttgataagtttcttcttt 41805549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 2423327 - 2423201
Alignment:
Q  201 tttggtttggtttgcggtttttattttacc-----aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattca 294  Q
    ||||||||| ||||||||||| ||||||||     ||||||| |||||| |||||||||||||| | ||||||||| |||||| | ||  | |||| |||    
T  2423327 tttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccgcaacataagaaaaacattaattaaatctatgtcacctagacaaatactca 2423228  T
Q  295 tagaaactcaatggaaacttttataaa 321  Q
    || ||||||||| ||||||||||||||    
T  2423227 taaaaactcaatagaaacttttataaa 2423201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 40692958 - 40692882
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtc 277  Q
    |||||||| |||| ||||||||||||||||||||||| |||||| | |||||||||||| |||||||||| |||||||    
T  40692958 tttggtttagtttacggtttttattttaccaaccaaaccaaaccgc-acataagaaaaacactaattaaacatatgtc 40692882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 6633732 - 6633660
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||||  ||||| ||||||| |||||||    
T  6633732 ccaatactcatagaaactcaatgaaaacttttataaaatgacatattttttctgttgataagttttttctttg 6633660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 19402777 - 19402721
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaa 237  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||    
T  19402777 ttttttactcaaccgcacggtttggttatgtttgcggtttttattttaccaaccaaa 19402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 353
Target Start/End: Complemental strand, 25495661 - 25495450
Alignment:
Q  156 atttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca--------- 245  Q
    |||||||| ||||||||||| |||||||||| |||||||||||   |||||||   ||||||||||| |||||||||||| || |||||||             
T  25495661 atttgattcagatatattcagatcatttttttactcaaccgcatggtttggttca-tttgcggttttaattttaccaaccgaaccaaaccaaactaaacc 25495563  T
Q  246 -caacataag-aaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt---tgttg 340  Q
     ||| ||||| |||||||||||||||||| | ||   ||  |||||| ||||| ||  |||||||||||||| ||||||||||||||||| |   | |||    
T  25495562 gcaatataagaaaaaaactaattaaatatgtatcatctagaccaatactcatataagttcaatggaaactttaataaaatgacattttttttttctcttg 25495463  T
Q  341 ttaagtttcttct 353  Q
    |||||||||||||    
T  25495462 ttaagtttcttct 25495450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 34087913 - 34087819
Alignment:
Q  167 atatattcaaatcatttttt--actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa 259  Q
    ||||||||||||||||||||  ||| ||||||    ||||||| ||||||| ||||| ||||||||||||||| |||||| ||| ||||||||||    
T  34087913 atatattcaaatcattttttttacttaaccgcgtggtttggttcggtttgcagttttgattttaccaaccaaaccaaaccgcaatataagaaaaa 34087819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 33793150 - 33793076
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatat 274  Q
    |||| |||||||||||||||| |||||| |||||||| |||||  ||| |||||||||| |||||||||||||||    
T  33793150 tttgatttggtttgcggttttgattttatcaaccaaaccaaactgcaatataagaaaaacactaattaaatatat 33793076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 12378752 - 12378808
Alignment:
Q  302 tcaatggaaacttttataaaatgacattttttgt--tgttgttaagtttcttctttg 356  Q
    |||||||||||||||||||||||||||||||| |  | |||||||||||||||||||    
T  12378752 tcaatggaaacttttataaaatgacatttttttttcttttgttaagtttcttctttg 12378808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 6595451 - 6595407
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  6595451 tttggtttggtttgcggttttcattttaccaaccaaaccaaacca 6595407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 7591089 - 7591204
Alignment:
Q  239 caaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttg 337  Q
    |||||| |||| ||||||||| |||||| |||| |||||| ||||  | |||| |||||||||||||||| ||||||  |||| |||| || |||| ||     
T  7591089 caaaccgcaacttaagaaaaatactaatcaaatctatgtcacata--caaatactcatagaaactcaatgaaaacttcaataacatgagatgtttttttc 7591186  T
Q  338 ttgttaagtttcttcttt 355  Q
    ||||||| ||||||||||    
T  7591187 ttgttaaatttcttcttt 7591204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 344
Target Start/End: Complemental strand, 14652964 - 14652827
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    ||||||||||||||||||||| |||||||||||     |||||| ||||||||||||||   ||| |||  | ||||||||    |||||  | ||||||    
T  14652964 tttggtttggtttgcggttttcattttaccaac-----caaacctcaacataagaaaaatgttaactaa--acatgtctcacggaccaatgcttatagaa 14652872  T
Q  300 actcaatggaaacttttataaaatgacattttttgttgttgttaa 344  Q
    || ||||| |||||||||||||||||| |||||| || |||||||    
T  14652871 acgcaatgaaaacttttataaaatgacttttttttttcttgttaa 14652827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 733476 - 733564
Alignment:
Q  155 tatttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    ||||||||| |||||||||||||||||||||| |||| || | |  ||||| ||||||||   |||||||||||| |||||||| ||||    
T  733476 tatttgattaagatatattcaaatcattttttgactccactgtatgatttgatttggtttttcgtttttattttagcaaccaaaccaaa 733564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 23623546 - 23623482
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||||||||||||   ||||||||||||||||||||| |||| || |||| || |||||||    
T  23623546 ttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaacca 23623482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 691259 - 691294
Alignment:
Q  293 catagaaactcaatggaaacttttataaaatgacat 328  Q
    ||||||||||||||||||||||||||||||| ||||    
T  691259 catagaaactcaatggaaacttttataaaattacat 691294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 38176025 - 38176115
Alignment:
Q  154 gtatttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacc 244  Q
    ||||||| ||| ||||||||  ||||||||||| ||| ||| ||| | |||||||   ||| ||||||||||||||||||||||||||||||    
T  38176025 gtatttggtttggatatatttgaatcatttttttacttaactgca-agtttggttcaatttacggtttttattttaccaaccaaatcaaacc 38176115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 38203249 - 38203339
Alignment:
Q  154 gtatttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacc 244  Q
    ||||||| ||| ||||||||  ||||||||||| ||| ||| ||| | |||||||   ||| ||||||||||||||||||||||||||||||    
T  38203249 gtatttggtttggatatatttgaatcatttttttacttaactgca-agtttggttcaatttacggtttttattttaccaaccaaatcaaacc 38203339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 39730770 - 39730640
Alignment:
Q  208 tggtttgcggtttttattttaccaaccaaatcaaacca----------caacataagaaaaaactaattaaatatatgtctcataatccaatattcatag 297  Q
    |||||||||||||| |||||||||||||||  ||||||          ||||||||||||||  |||||||| |||| || | ||  |||||| | |||     
T  39730770 tggtttgcggttttcattttaccaaccaaacaaaaccaaaccgaactgcaacataagaaaaatgtaattaaacatatctcacctagaccaatacttataa 39730671  T
Q  298 aaactcaatggaaacttttataaaatgacat 328  Q
    |||||||||| ||| ||||||||||||||||    
T  39730670 aaactcaatgaaaagttttataaaatgacat 39730640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 40109086 - 40109149
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||||||||| |  ||||| ||||||||||| ||||||||||| ||||| | ||||||||    
T  40109086 tttttactcaaccgtatgatttgatttggtttgcgatttttattttaacaaccgagtcaaacca 40109149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 5175200 - 5175273
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatat 274  Q
    |||||||||||||| | |||| ||||||||||||||| |||||| ||| |||| ||||| ||| |||||||||||    
T  5175200 tttggtttggtttgtg-ttttgattttaccaaccaaaccaaaccgcaatataaaaaaaacactgattaaatatat 5175273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 36568143 - 36568073
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctt 354  Q
    |||||| ||||| |||||||||||||||||| ||| |||||||| |||||  | ||||||||| |||||||    
T  36568143 ccaatactcataaaaactcaatggaaactttgatacaatgacatattttttctcttgttaagtgtcttctt 36568073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 38176147 - 38176205
Alignment:
Q  298 aaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    ||||||||| ||||||||||||||||||||| |||||   |||||||| ||||||||||    
T  38176147 aaactcaatcgaaacttttataaaatgacatattttttcagttgttaaatttcttcttt 38176205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 38203371 - 38203429
Alignment:
Q  298 aaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    ||||||||| ||||||||||||||||||||| |||||   |||||||| ||||||||||    
T  38203371 aaactcaatcgaaacttttataaaatgacatattttttcagttgttaaatttcttcttt 38203429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 691156 - 691213
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||   ||||||||| ||||||||||| |||||||||||| || |||||||    
T  691156 ctcaaccgcatggtttggtttgatttgcggttttcattttaccaaccgaaccaaacca 691213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 6719087 - 6719051
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaa 237  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  6719087 tttggttcggtttgcgttttttattttaccaaccaaa 6719051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 17131651 - 17131715
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  17131651 ttttttactcaatagcatgattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 17131715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 18845999 - 18845956
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa--actaattaaatat 272  Q
    |||||||||||||| ||||||||||||||  |||||||||||||    
T  18845999 aaccaaatcaaaccgcaacataagaaaaaacactaattaaatat 18845956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 32243946 - 32244010
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  32243946 ttttttactcaatagcatgattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 32244010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 42920134 - 42920178
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||| ||||||||||||||||||| || | ||||||||||    
T  42920134 tttggtttgatttgcggtttttattttacgaatcgaatcaaacca 42920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 156 - 355
Target Start/End: Complemental strand, 27456893 - 27456685
Alignment:
Q  156 atttgatttagatatattcaaatcatttttta--ctcaaccgcacaatttggtttggtttgcggtttttattttacc-----aaccaaatcaaaccacaa 248  Q
    ||||||||| ||| |||||| ||||||||||   || ||||||| | |||| |||||||||||||||| ||||| ||     ||||||| |||||| |||    
T  27456893 atttgatttggatgtattcatatcattttttttcctaaaccgcatagtttgctttggtttgcggttttcattttcccaaccgaaccaaaccaaaccgcaa 27456794  T
Q  249 cataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagt 346  Q
    ||||||||||| ||||||||||| |||||||| ||  |||||| |||||||||||||||| |||||||| ||||||||||| |||||  | |||||||||    
T  27456793 cataagaaaaacactaattaaatctatgtctcctagaccaatactcatagaaactcaatgaaaacttttgtaaaatgacatattttttctcttgttaagt 27456694  T
Q  347 ttcttcttt 355  Q
    |||||||||    
T  27456693 ttcttcttt 27456685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 355
Target Start/End: Complemental strand, 43202963 - 43202772
Alignment:
Q  167 atatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataaga-aaaaactaa 264  Q
    ||||||||| |||| |||||||||||| ||||   |||||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||| |||||    
T  43202963 atatattcagatcacttttttactcaatcgcatggtttggtttggtttgtggtttttattttaccaaccaaaccaaaccacaacataatacaaacactaa 43202864  T
Q  265 ttaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    |||||| ||||||   ||  |||||| || || |||||||||| ||||||||||| ||| |||| |||||  | ||||||||||||||||||    
T  43202863 ttaaatctatgtcatctagaccaatactcgtataaactcaatgaaaacttttatataataacatattttttctcttgttaagtttcttcttt 43202772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 156 - 355
Target Start/End: Original strand, 29211141 - 29211340
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataag 254  Q
    ||||| ||| |||||||||  |||| |||||||||||||||||   ||||||||||||||| |||||  |||||||||||||| ||| |  | |||||||    
T  29211141 atttggtttggatatattcggatcacttttttactcaaccgcatggtttggtttggtttgcagttttacttttaccaaccaaaccaatcg-cgacataag 29211239  T
Q  255 aaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttct 353  Q
     |||| ||||||||||| |||||| | ||  ||||||||||||||||||||||| ||||||||||||||||| ||| |||  | ||||||||||||||||    
T  29211240 gaaaacactaattaaatctatgtcacctagaccaatattcatagaaactcaatgaaaacttttataaaatgatattgttt-ctcttgttaagtttcttct 29211338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 154 - 355
Target Start/End: Complemental strand, 26956403 - 26956200
Alignment:
Q  154 gtatttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacata 252  Q
    ||||||| ||||||| ||||| ||||| ||||||||||||||||    ||||| | ||||||  |||||||||||||||||| ||||||||||||| |||    
T  26956403 gtatttggtttagatgtattcgaatcacttttttactcaaccgcgtggtttggatcggtttg-tgtttttattttaccaaccgaatcaaaccacaatata 26956305  T
Q  253 agaaaaa--actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttc 349  Q
    |||||||  ||||||||||||||||||   ||  |||||| || |||||||| |||| |||||||||| ||||||||| | ||| || ||||||||||||    
T  26956304 agaaaaaacactaattaaatatatgtcagctacgccaatactcgtagaaacttaatgtaaacttttat-aaatgacatatatttttttttgttaagtttc 26956206  T
Q  350 ttcttt 355  Q
    ||||||    
T  26956205 ttcttt 26956200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 356
Target Start/End: Original strand, 27100121 - 27100328
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caac 249  Q
    |||||||| | || |||||| |||| ||||||||||||||| |   ||||||||||||||||||||| ||||||||||||||| |||||||     |||     
T  27100121 atttgattcaaatgtattcagatcacttttttactcaaccgtatggtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaat 27100220  T
Q  250 ataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagttt 348  Q
    |||||||||| |||  |||||||||| || | ||  |||||| | ||| ||| |||||| ||||||| |||||||||| |||||| || |||||||||||    
T  27100221 ataagaaaaacactctttaaatatatatcacttataccaatacttatataaattcaatgaaaactttaataaaatgacttttttttttcttgttaagttt 27100320  T
Q  349 cttctttg 356  Q
    ||||||||    
T  27100321 cttctttg 27100328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 356
Target Start/End: Complemental strand, 27178182 - 27177975
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caac 249  Q
    |||||||| | || |||||| |||| ||||||||||||||| |   ||||||||||||||||||||| ||||||||||||||| |||||||     |||     
T  27178182 atttgattcaaatgtattcagatcacttttttactcaaccgtatggtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaat 27178083  T
Q  250 ataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagttt 348  Q
    |||||||||| |||  |||||||||| || | ||  |||||| | ||| ||| |||||| ||||||| |||||||||| |||||| || |||||||||||    
T  27178082 ataagaaaaacactctttaaatatatatcacttataccaatacttatataaattcaatgaaaactttaataaaatgacttttttttttcttgttaagttt 27177983  T
Q  349 cttctttg 356  Q
    ||||||||    
T  27177982 cttctttg 27177975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 524407 - 524594
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca----------caacataagaaaaaa-ctaattaaa 269  Q
    |||||| ||||||||||   ||||||||||||||||||||| |||||||||||| || |||||||          |||||||| |||||  |||||||||    
T  524407 ttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaacataaaaaaaattctaattaaa 524506  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    | |||||| | ||  ||| || |||||||||||||||||||||||||||||||| |||| |||||  | |||||||||||||||||||    
T  524507 tctatgtcacctagaccagtactcatagaaactcaatggaaacttttataaaataacatattttttctattgttaagtttcttctttg 524594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 359
Target Start/End: Original strand, 11833999 - 11834193
Alignment:
Q  170 tattcaaatcat-tttttactcaaccgcacaatttggtttggtttgcggtttttattttacc-aaccaaatcaaaccacaacataagaaaaa-actaatt 266  Q
    |||||| ||||| |||||||||||| |||  |||||||| |||||| |||||| |||||||| ||||||| |||||| ||| |||||||||| | |||||    
T  11833999 tattcatatcatgtttttactcaactgcatgatttggttcggtttgtggttttgattttaccaaaccaaaccaaaccgcaatataagaaaaatattaatt 11834098  T
Q  267 aaatatatgtc-tcataatccaatattcatagaaactcaatggaaacttttataaaatgaca--ttttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||| || || | | |||||| ||||||||| |||||||||||||| |||| ||||||  ||||||  | ||| ||||||||||||||||||    
T  11834099 aaatatatatcatcttga-ccaatactcatagaaattcaatggaaactttaataatatgacatctttttttctcttgctaagtttcttctttgttt 11834193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 355
Target Start/End: Original strand, 47646310 - 47646486
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    ||||||||||||||  |  |||||||| ||||||||||||||||||||| |||| || ||| || |||||||||||||| | | ||| ||| || ||| |    
T  47646310 ttttttactcaaccatattatttggttcggtttgcggtttttattttactaaccgaaccaatccgcaacataagaaaaacattgattgaatctaagtcac 47646409  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
     ||  |||||| |||||||||||| ||||||| ||| |||||||||||| |||||  | ||||||||||||||||||    
T  47646410 ctagaccaatactcatagaaactcgatggaaattttaataaaatgacatattttttctcttgttaagtttcttcttt 47646486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 356
Target Start/End: Complemental strand, 40849428 - 40849213
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttacc----------aaccaaatcaaacc 244  Q
    ||||||||| ||| |||||  |||| |||||||||||||||||   ||||||||||||||||||||| ||||||||          ||||||| ||||||    
T  40849428 atttgatttggatgtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 40849329  T
Q  245 acaacataagaa-aaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgaca---ttttttgttgttg 340  Q
     ||||||||||| ||  |||||||||| ||||||    |  |||||| ||||||||||||||||||||||||||||||| ||||   ||||||  |||||    
T  40849328 gcaacataagaacaactctaattaaatctatgtcatcgagaccaatactcatagaaactcaatggaaacttttataaaacgacatattttttttctgttg 40849229  T
Q  341 ttaagtttcttctttg 356  Q
    ||||||||||| ||||    
T  40849228 ttaagtttcttttttg 40849213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 46147724 - 46147567
Alignment:
Q  205 gtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatatgtctcataatccaatattcataga 298  Q
    |||||| |||||||||| ||||||||||||||| |||||||     |||||||||||||| ||||||||||| |||||  ||||  | |||| ||||| |    
T  46147724 gtttggattgcggttttcattttaccaaccaaaccaaaccaaaccgcaacataagaaaaacactaattaaatctatgttacatagacaaatactcataaa 46147625  T
Q  299 aactcaatggaaacttttataaaatgacattttttgttg-ttgttaagtttcttctttg 356  Q
    ||||| |||||||||||||| |||||||||  ||| ||| |||||||||||||||||||    
T  46147624 aactcgatggaaacttttat-aaatgacatacttttttgcttgttaagtttcttctttg 46147567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 26208834 - 26208985
Alignment:
Q  183 ttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatatgt 276  Q
    |||||||||||||||   |||||||  ||||| || |||||||||||||||||||  ||||||     |||| ||||||||| |||| ||||||||||||    
T  26208834 ttttactcaaccgcatggtttggttcagtttgtggattttattttaccaaccaaactaaaccaagccgcaacgtaagaaaaacactagttaaatatatgt 26208933  T
Q  277 ctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |   ||| |||||| ||||||||| |||| | ||||||||||||||||||||    
T  26208934 catctaaaccaatactcatagaaaatcaacgaaaacttttataaaatgacat 26208985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 31011332 - 31011487
Alignment:
Q  209 ggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaac- 301  Q
    |||||| ||||||||||||||||||||||  ||||||     |||||||||||||| |||||||||| |||||||   ||  |||||||||||||||||     
T  31011332 ggtttgaggtttttattttaccaaccaaacgaaaccaaaccgcaacataagaaaaacactaattaaacatatgtcgtctagaccaatattcatagaaact 31011431  T
Q  302 ----tcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttct 353  Q
        |||||||||||||||||||||| | || ||||  | ||||||||||||||||    
T  31011432 aaactcaatggaaacttttataaaataagatatttttctcttgttaagtttcttct 31011487  T

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Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 356
Target Start/End: Complemental strand, 1813034 - 1812836
Alignment:
Q  166 gatatattcaaatcatt-ttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacca-----aatcaaaccacaacataagaaaaa 259  Q
    |||||||||  |||||| ||||||||||||||| | |||||||  |||||||||||| |||||||||||||     || |||||| ||| |||| |||||    
T  1813034 gatatattcggatcattattttactcaaccgcatagtttggttcagtttgcggttttgattttaccaaccaaacggaaccaaaccgcaatataaaaaaaa 1812935  T
Q  260 -actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     ||||||||||||||| |    ||  |||||| ||||||||| |||||| ||| ||| |||||||||||| |||||  | ||||| |||||||||||||    
T  1812934 cactaattaaatatatattatctagaccaatactcatagaaattcaatgaaaattttaataaaatgacatattttttctcttgttgagtttcttctttg 1812836  T

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Target: chr7; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 333
Target Start/End: Complemental strand, 48643312 - 48643167
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatcc 286  Q
    ||||||| || | ||||||||||||||| ||||  |||||||||||  || |||||| ||||||||||||||   |||||||| |||| || | ||  ||    
T  48643312 ctcaaccacatagtttggtttggtttgcagtttacattttaccaactgaaccaaaccgcaacataagaaaaatgttaattaaacatatctcacctatacc 48643213  T
Q  287 aatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||| |||||||||||||||| |||| ||||||||||||||| ||||    
T  48643212 aatactcatagaaactcaatgaaaac-tttataaaatgacatatttt 48643167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 2734809 - 2734686
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaac-taattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgac--a 327  Q
    ||||||| |||||||||||| |||||||| | ||||||||| ||||||   ||  |||||| |||||||||||||||| | ||||||||||||||||  |    
T  2734809 aaccaaaccaaaccacaacacaagaaaaatcctaattaaatctatgtcatctagaccaatactcatagaaactcaatgaatacttttataaaatgacata 2734710  T
Q  328 ttttttgttgttgttaagtttctt 351  Q
    ||||||  | ||||||||||||||    
T  2734709 tttttttctcttgttaagtttctt 2734686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 352
Target Start/End: Complemental strand, 11399609 - 11399482
Alignment:
Q  228 accaaccaaatcaaaccacaacataagaaaaa-actaattaaa-tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatga 325  Q
    ||||| |||| |||||| || ||||| ||||| |||||||||| | |||||| | ||  |||||| || |||||| ||||||||||||||||||||||||    
T  11399609 accaaacaaaccaaaccgcagcataataaaaacactaattaaaatctatgtcacctagaccaataatcttagaaattcaatggaaacttttataaaatga 11399510  T
Q  326 cattttttgt-tgttgttaagtttcttc 352  Q
    ||| |||||| | |||||||||||||||    
T  11399509 catattttgtctcttgttaagtttcttc 11399482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 20335076 - 20334973
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||| || | ||  |||||| ||||||||| |||||| ||||||| ||||| ||||||     
T  20335076 aaccaaatcaaaccacaatataagaaaaacactaattaaatgtatatcacctagaccaatactcatagaaattcaatgaaaactttaataaattgacata 20334977  T
Q  330 tttt 333  Q
    ||||    
T  20334976 tttt 20334973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 356
Target Start/End: Original strand, 23410773 - 23410944
Alignment:
Q  187 actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataaga-aaaaactaattaaatatatgtctcataatc 285  Q
    ||||||| |||| |||||||| ||||| |||||||||||||||||||| ||  ||||| |||||||||| ||| | || |||||| ||| ||    || |    
T  23410773 actcaactgcacgatttggttaggtttacggtttttattttaccaaccgaactaaaccgcaacataagagaaatattagttaaatttatctcatccaacc 23410872  T
Q  286 caatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     |||| |||||||||||||||   ||||| |||||||||| || |||||  | |||||||||||||||||||    
T  23410873 taatactcatagaaactcaataagaacttctataaaatgaaatattttttctcttgttaagtttcttctttg 23410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 47484276 - 47484185
Alignment:
Q  211 tttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaaact 302  Q
    |||||||||||||||||||||||  ||||||||| ||| |||||||||  |||||||||  |||||| ||||| |||||| ||||| |||||    
T  47484276 tttgcggtttttattttaccaactgaatcaaaccgcaatataagaaaatgctaattaaacctatgtcacataaaccaatactcatataaact 47484185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 6879696 - 6879822
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| ||||| ||||| ||||||||| |||||||||| |||| || | ||  | |||| |||||||| ||||||| ||||||| ||||||||||||     
T  6879696 aaccaaaccaaactacaacttaagaaaaatactaattaaacatatatcacctagactaatactcatagaagctcaatgaaaactttaataaaatgacata 6879795  T
Q  329 tttttgttgttgttaagtttcttcttt 355  Q
    |||||  | ||||||||||||||||||    
T  6879796 ttttttctcttgttaagtttcttcttt 6879822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 26587717 - 26587802
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||| ||||||| |||||| |||| |||||||||||||||||     ||||||||||||| |||||||||||||||||| ||||||||||    
T  26587717 atttggtttagatgtattcatatcacttttttactcaaccgca-----tggtttggtttgcagtttttattttaccaaccgaatcaaacca 26587802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 7697780 - 7697649
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-act-aattaaatatatgtctcata-at---ccaatattcatagaaactcaatggaaacttttataaaatg 324  Q
    ||||||| |||||||||| |||||||||| ||| |||||||||||| || |||| ||   |||||| |||||||||||||||| ||||||| |||||| |    
T  7697780 aaccaaaccaaaccacaatataagaaaaacacttaattaaatatatatcacatacatagaccaatactcatagaaactcaatgaaaactttaataaaaag 7697681  T
Q  325 acat-tttttgttgttgttaagtttcttcttt 355  Q
    |||| |||||  | ||||||||||||||||||    
T  7697680 acatattttttctattgttaagtttcttcttt 7697649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 8117881 - 8117976
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatga 325  Q
    |||||||||||||| ||||||||||||||  | ||||||| || | || | ||| |||||| ||||| |||||||||||||||| |||||||||||    
T  8117881 aaccaaatcaaaccgcaacataagaaaaacgttaattaaaaatgtatcacctaaaccaatactcatataaactcaatggaaactcttataaaatga 8117976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 321
Target Start/End: Original strand, 17492980 - 17493091
Alignment:
Q  217 gtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtc----tca--taatccaatattcatagaaactcaatgga 309  Q
    |||||||||||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||    |||  ||  | |||| ||||| ||||||||||||    
T  17492980 gtttttattttaccaatcaaatcaaaacacaacataagaaaaacattaattaaatctatgtcaatgtcacctaggcaaatactcataaaaactcaatgga 17493079  T
Q  310 aacttttataaa 321  Q
    ||||||||||||    
T  17493080 aacttttataaa 17493091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 17560234 - 17560123
Alignment:
Q  217 gtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtc----tca--taatccaatattcatagaaactcaatgga 309  Q
    |||||||||||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||    |||  ||  | |||| ||||| ||||||||||||    
T  17560234 gtttttattttaccaatcaaatcaaaacacaacataagaaaaacattaattaaatctatgtcaatgtcacctaggcaaatactcataaaaactcaatgga 17560135  T
Q  310 aacttttataaa 321  Q
    ||||||||||||    
T  17560134 aacttttataaa 17560123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 33435405 - 33435339
Alignment:
Q  290 attcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||  | ||||||||||||||||||    
T  33435405 attcatagaaactcaatgtgaacttttataaaatgacatgttttttctcttgttaagtttcttcttt 33435339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 36550892 - 36550818
Alignment:
Q  286 caatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||||||||| |||||| |||| |||||||||||||||| |||||  | |||||||| |||||||||||||    
T  36550892 caatattcatagaagctcaattgaaatttttataaaatgacatattttttctcttgttaagcttcttctttgttt 36550818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 356
Target Start/End: Complemental strand, 22299080 - 22298888
Alignment:
Q  176 aatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca----------caacataagaaaaa-acta 263  Q
    ||||||||||| ||||||| |||  |||||||| ||||||||||||| |||||||||||| || |||||||           || |||||||||| ||||    
T  22299080 aatcattttttcactcaacagcatgatttggttcggtttgcggttttgattttaccaaccgaaccaaaccaaaccaatccgtaatataagaaaaacacta 22298981  T
Q  264 attaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
    ||||||||| | ||   |||  ||||| ||||||||| |||||| ||||||| | ||||||||| |||||  | |||||||||||||| ||||    
T  22298980 attaaatatctatcatctaaatcaatactcatagaaattcaatgaaaactttaacaaaatgacaattttttctcttgttaagtttcttttttg 22298888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 23675872 - 23675775
Alignment:
Q  211 tttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatg 307  Q
    ||||||||||| | |||| ||| ||||||||| | ||| |||||||||| ||||||||||| |||||| | ||| | |||| ||||||||||||||||    
T  23675872 tttgcggttttcagtttaacaagcaaatcaaaacgcaatataagaaaaacactaattaaatttatgtcacctaaactaatactcatagaaactcaatg 23675775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 35495891 - 35495763
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgac--a 327  Q
    ||||||| |||||| ||| |||||||||| |||||||||| ||||||| | ||   ||||| |  ||||| ||||||||||||||||||||||  ||  |    
T  35495891 aaccaaaccaaaccgcaatataagaaaaacactaattaaacatatgtcacctagatcaatacttttagaatctcaatggaaacttttataaaacaacata 35495792  T
Q  328 ttttttgttgttgttaagtttcttctttg 356  Q
    ||||||  | |||||||||||||||||||    
T  35495791 tttttttctcttgttaagtttcttctttg 35495763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 348
Target Start/End: Original strand, 8568148 - 8568269
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtc-tcataatccaatattcatagaaactcaatggaaacttttataaaatgac-- 326  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||| || |||  | |||||  ||||||||| |||||||||||||| ||||||||||      
T  8568148 aaccaaaccaaaccgcaatataagaaaaacactaattaaatatatatcatcaaga-ccaatgctcatagaaattcaatggaaactttaataaaatgacat 8568246  T
Q  327 -attttttgttgttgttaagttt 348  Q
     ||||||| || |||||||||||    
T  8568247 aatttttttttcttgttaagttt 8568269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 31287316 - 31287380
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||||||||||||   ||||||| ||||||||||||| |||||||||||| || |||||||    
T  31287316 ttttttactcaaccgcatggtttggttcggtttgcggttttaattttaccaaccgaaccaaacca 31287380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 30855645 - 30855574
Alignment:
Q  173 tcaaatcatttt-ttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaac 243  Q
    |||||||||||| ||| |||||| ||   ||||||||||||||||||||| ||||||||||||||| |||||    
T  30855645 tcaaatcattttcttattcaaccacatggtttggtttggtttgcggttttcattttaccaaccaaaccaaac 30855574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 16535402 - 16535472
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctt 354  Q
    |||||| | ||||||||||||||||||||||| ||||||||||| |||||  | ||| |||||||||||||    
T  16535402 ccaatacttatagaaactcaatggaaacttttttaaaatgacatattttttctcttgataagtttcttctt 16535472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 16630260 - 16630190
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctt 354  Q
    |||||| | ||||||||||||||||||||||| ||||||||||| |||||  | ||| |||||||||||||    
T  16630260 ccaatacttatagaaactcaatggaaacttttttaaaatgacatattttttctcttgataagtttcttctt 16630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 355
Target Start/End: Complemental strand, 25007763 - 25007618
Alignment:
Q  211 tttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatgga 309  Q
    |||||||||||  ||||||| |||||| |||||  ||| |||||||||| | |||||||||||||  |   ||  |||||| ||||||||| | |||| |    
T  25007763 tttgcggttttggttttacctaccaaaccaaactgcaatataagaaaaacattaattaaatatat--catctaggccaatactcatagaaattaaatgaa 25007666  T
Q  310 aacttttataaaatgacattttttgt--tgttgttaagtttcttcttt 355  Q
    || ||| ||||||||||||||||| |  | ||||||||||||||||||    
T  25007665 aattttaataaaatgacatttttttttctcttgttaagtttcttcttt 25007618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 27214790 - 27214917
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaa--ctaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||||||||||  |||||| |||| |||  |||||||||||||||||   ||    |||| ||||||||| ||||||||||||||||| |||||||||    
T  27214790 aaccaaatcaaactgcaacattagaagaaatgctaattaaatatatgtcatctacgttaatactcatagaaattcaatggaaacttttat-aaatgacat 27214888  T
Q  329 tttttgt-tgttgttaagtttcttctttg 356  Q
     | || | | |||||||||||||||||||    
T  27214889 atattatcttttgttaagtttcttctttg 27214917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 21237432 - 21237468
Alignment:
Q  292 tcatagaaactcaatggaaacttttataaaatgacat 328  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21237432 tcatagaaattcaatggaaacttttataaaatgacat 21237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 29628737 - 29628606
Alignment:
Q  201 tttggtttggtttgcggtttttattttacc----------aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaat 289  Q
    |||||||||||||||| |||| ||||||||          ||||||| |||||| |||||||||||||| ||||||||||  |||||| | ||  | ||     
T  29628737 tttggtttggtttgcgattttcattttaccaaccgaaccaaaccaaaccaaaccgcaacataagaaaaacactaattaaagctatgtcacctacacaaac 29628638  T
Q  290 attcatagaaactcaatggaaacttttataaa 321  Q
    | | ||||||||||||||||||||||||||||    
T  29628637 actgatagaaactcaatggaaacttttataaa 29628606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 24477893 - 24477838
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaa 237  Q
    |||||| |||||| ||  ||||||||||||||| ||||||||||||| ||||||||    
T  24477893 tttttagtcaaccacatgatttggtttggtttgtggtttttattttagcaaccaaa 24477838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 22700900 - 22701061
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaa-----ccaaatcaaacca-----caacataagaaaaaactaattaaatatatgtctcataatccaata 290  Q
    ||||||| |||||||| |||||||||||||||     |||||||||||||     |||||||| |||| | |||||||||||||||  |||||  |||||    
T  22700900 tttggttcggtttgcgatttttattttaccaatagaaccaaatcaaaccaaactgcaacataaaaaaacaataattaaatatatgttacataaatcaata 22700999  T
Q  291 ttcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttct 353  Q
     || |||||| | |||  ||||| |||||||| ||||| | ||  | ||||||||||||||||    
T  22701000 ctcgtagaaaataaataaaaactgttataaaaggacatatctt-ctcttgttaagtttcttct 22701061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 35819645 - 35819709
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  35819645 ttttttactcaatagcatgattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 35819709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 37376288 - 37376244
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||| |||||||||||||||| |||||||||||| || |||||||    
T  37376288 tttgatttggtttgcggttttcattttaccaaccgaaccaaacca 37376244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 181 - 355
Target Start/End: Complemental strand, 46471959 - 46471784
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||||   ||||||||| |||||| |    
T  46471959 ttttttactcaaccgcatgatttggtttggtttgcggttttcattttatgaaccaaaccaaaccacaacataagaaaaactttaattaaat-tatgtcac 46471861  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
     ||  |||||| | ||| |||||||||||||| |||||||||||||||| |||||  | ||||||||||| ||||||    
T  46471860 ctagaccaatacttataaaaactcaatggaaatttttataaaatgacatattttttctcttgttaagttttttcttt 46471784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 49641343 - 49641220
Alignment:
Q  205 gtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactc 303  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||| |||||| | ||  | |||| ||||||||||||    
T  49641343 gtttggtttgcggtttttattttaccaaccaaaccaaaccacgacataagaaaaataccaattaaatttatgtcacctagactaatactcatagaaactc 49641244  T
Q  304 aatggaaacttttataaaatgaca 327  Q
     ||||||| |||||||||||||||    
T  49641243 catggaaatttttataaaatgaca 49641220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 13715225 - 13715071
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacat-aagaaaaaactaattaaatatatgtctcataatccaatattcatagaaac 301  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||| || |||| |||||||||||||||||| ||||  |||||| |||||  ||     
T  13715225 tggtttggtctgcggtttttattttaccaaccaaaccaaaccgcaacataaataaaacactaattaaatatatgtcacatataccaatactcatattaaa 13715126  T
Q  302 tcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
    | |||||||||||||||||||| |||| ||||  | ||| || ||||||||||||    
T  13715125 taaatggaaacttttataaaataacatatttttctcttgctatgtttcttctttg 13715071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 3666638 - 3666792
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    |||||||||||||||| ||||| |||||||||||||| | |||| |||||||||||||| | |||||||| ||||||  | ||  | |||||||||||||    
T  3666638 tttggtttggtttgcgatttttgttttaccaaccaaaccgaaccgcaacataagaaaaacaataattaaacatatgtaacttagactaatattcatagaa 3666737  T
Q  300 actcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttct 353  Q
    |||||||| ||||||||||||||||| || |||||  | ||||||||||| ||||    
T  3666738 actcaatgaaaacttttataaaatgatatattttttctcttgttaagttttttct 3666792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 8312385 - 8312235
Alignment:
Q  212 ttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaa 310  Q
    |||| |||||||||||||||||||||| |||    ||||||||| ||| | |||||||| ||||||| ||||  ||||||||||||||||||||||| ||    
T  8312385 ttgcagtttttattttaccaaccaaattaaattgtaacataagataaacattaattaaacatatgtcacatagaccaatattcatagaaactcaatgaaa 8312286  T
Q  311 acttttataaaatgac--attttttgttgttgttaagtttcttctttgttt 359  Q
    | ||||||||||||||  ||||||| |  ||||||||| ||||||||||||    
T  8312285 atttttataaaatgacaaattttttctctttgttaagtctcttctttgttt 8312235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 18399537 - 18399380
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    |||| ||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||| |||||||||| |||| ||   ||   |||||   ||||||    
T  18399537 tttgctttggtttgcgttttttattttaccaaccaaaccaaacaacatcataagaaaaacactaattaaacatatatcatctagaacaatacaaatagaa 18399438  T
Q  300 actcaatggaaacttttataaaatgacattttttgttg--ttgttaagtttcttctttg 356  Q
    ||||||||||||||||||| ||||||||| |||| |||  |||||||||||||||||||    
T  18399437 actcaatggaaacttttatgaaatgacatatttt-ttgacttgttaagtttcttctttg 18399380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 32222874 - 32223037
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaa--------ccaaatcaaaccacaacataagaaaaa-actaattaaa-tatatgtctcataatccaata 290  Q
    ||||||||||||||||||||| ||||||| ||        ||||| |||||| |||||||| ||||| |||||||||| |||||||| | ||  ||||||    
T  32222874 tttggtttggtttgcggttttcattttacaaattaccgaaccaaaccaaaccgcaacataataaaaacactaattaaaatatatgtcacctataccaata 32222973  T
Q  291 ttcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttcttt 355  Q
    |||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||    
T  32222974 ttcatataaactcaatgtaaacttttataaaatgacatatttt-ttcttgttaagtttcttcttt 32223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 359
Target Start/End: Complemental strand, 4689194 - 4689034
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    |||||||||||||||||||||||| ||||||||| || |||||  |||||||||||||| | ||||||||  |||||| | ||  | |||| ||||| ||    
T  4689194 tttggtttggtttgcggtttttatattaccaaccgaaacaaactgcaacataagaaaaacaataattaaacttatgtcacctagacaaatactcataaaa 4689095  T
Q  300 actcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||| |||||| |||||||||| || |||||  | ||||||| ||||||||||||||    
T  4689094 actcaatgaaaacttctataaaatgatatattttttctcttgttaattttcttctttgttt 4689034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 35232874 - 35232998
Alignment:
Q  210 gtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatgg 308  Q
    ||||||||||||||||||| ||||| ||  ||||| |||||||||||||| ||||||||||  |||||| | ||  | ||||  |||||||||||||||     
T  35232874 gtttgcggtttttattttatcaaccgaactaaaccgcaacataagaaaaacactaattaaacttatgtcacctagacaaatacacatagaaactcaatga 35232973  T
Q  309 aaacttttataaaatgacatttttt 333  Q
    |||||| ||||||||||||||||||    
T  35232974 aaacttctataaaatgacatttttt 35232998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 48338882 - 48338700
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca----------caacataagaaaaaactaattaaat 270  Q
    |||||| ||||||||||   ||||||||||||||||||||| |||||||||||| || |||||||          ||||||||||||||     |  |||    
T  48338882 ttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacaaaaccgcaacataagaaaaat----tctaat 48338787  T
Q  271 atatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     |||||| | ||  |||||| ||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||    
T  48338786 ctatgtcacctagaccaatactcatagaaactcaatggaaacttttataaaatgacatattttttctattgttaagtttcttctttg 48338700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 356
Target Start/End: Original strand, 41312194 - 41312398
Alignment:
Q  155 tatttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataa 253  Q
    |||||||||| ||||||||   |||| ||||||||||||||| |   || | |||||||| ||||||| ||||||  || |||| |||||| ||||||||    
T  41312194 tatttgatttggatatatttggatcacttttttactcaaccgtatggttcgatttggtttacggttttcattttagaaatcaaaccaaaccgcaacataa 41312293  T
Q  254 gaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttctt 351  Q
    ||||||  | |||||||| ||| || | ||  ||| || ||||||||||||||| |||||||||||| |||||||| |||||  | ||||||| ||||||    
T  41312294 gaaaaactttaattaaatctatatcacctagaccagtactcatagaaactcaatagaaacttttatagaatgacatattttttctattgttaaatttctt 41312393  T
Q  352 ctttg 356  Q
    |||||    
T  41312394 ctttg 41312398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 20986883 - 20986757
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||| || | |   |||||| ||||| ||||||||| |||||||| ||||||||||||     
T  20986883 aaccaaaccaaaccgcaatataagaaaaacactaattaaatatatatcacttggaccaatactcatataaactcaatagaaactttaataaaatgacata 20986784  T
Q  329 tttttgttgttgttaagtttcttcttt 355  Q
    |||||  | ||||||||||||||||||    
T  20986783 ttttttctcttgttaagtttcttcttt 20986757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 54273473 - 54273547
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataaga 255  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||| ||||| || |||||| ||||||||||    
T  54273473 ttttttactcaaccgcatgattcggtttggtttgcggtttttattttagcaaccgaaccaaaccgcaacataaga 54273547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 45464639 - 45464530
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||| |    ||| |||||| ||||||||| |||||| ||||||| |||||||||||||    
T  45464639 aaccaaatcaaaccgcaatataagaaaaatactgattaaatatatataatctaaaccaatactcatagaaattcaatgaaaactttaataaaatgacatt 45464540  T
Q  330 ttttgttgtt 339  Q
    |||| |||||    
T  45464539 ttttcttgtt 45464530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 23625454 - 23625553
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatat 274  Q
    ||||||| ||||||| | | ||||||||||||||||||||| ||||||||||||||| |||||||     ||| |||||||||| |||||||||||||||    
T  23625454 ttttttattcaaccgtatagtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaaacactaattaaatatat 23625553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 356
Target Start/End: Complemental strand, 29233281 - 29233106
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatatgtctcat 281  Q
    ||||||||||   ||||||| |||||| |||||| |||||||||||| || ||||| |     ||| |||||||||| ||||||||||||||| |  |||    
T  29233281 ctcaaccgcatggtttggttcggtttgtggttttaattttaccaaccgaaccaaacaaaaccccaatataagaaaaacactaattaaatatatattacat 29233182  T
Q  282 aatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
        ||||| |||||||||||||||| ||||||| |||||||||||| |||||    |||||||||||||||||||    
T  29233181 ggatcaatactcatagaaactcaatgaaaactttaataaaatgacatattttttcctttgttaagtttcttctttg 29233106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 355
Target Start/End: Original strand, 36105983 - 36106196
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc----------aaatcaaacc 244  Q
    ||||||||| ||| |||||| |||| |||||||||||||||||   |||| |||| ||||||||||  ||||||||||||          ||| ||||||    
T  36105983 atttgatttggatgtattcagatcacttttttactcaaccgcatggtttgctttgctttgcggtttccattttaccaaccgaaccagaccaaaccaaacc 36106082  T
Q  245 acaacataagaaaaaa-ctaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatg--acattttttgttgttgt 341  Q
     ||||||| ||||||  |||||||||| |||||| | ||  |||||| |||||||| |||||| ||||||||||||||| |  | |||||||  | ||||    
T  36106083 gcaacataggaaaaactctaattaaatctatgtcacctagaccaatactcatagaatctcaattgaaacttttataaaacggcatatttttttcttttgt 36106182  T
Q  342 taagtttcttcttt 355  Q
    ||||||||||||||    
T  36106183 taagtttcttcttt 36106196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 48685267 - 48685208
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaa 260  Q
    ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  48685267 tttggtttgatttgcggtttttattttaccaaccgaatcaaaccgcaacataaaaaaaaa 48685208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 41325879 - 41325749
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| ||| |||||||||| |||||||| |||||| || | |   |||||| ||  | |||||||||||||||||| ||||||||||||     
T  41325879 aaccaaaccaaaccgcaatataagaaaaacactaattagatatatatcactttgaccaatactcgaataaactcaatggaaactttaataaaatgacata 41325780  T
Q  329 tttttgttgttgttaagtttcttctttgttt 359  Q
    |||||  | ||||||||||||||||||||||    
T  41325779 ttttttcttttgttaagtttcttctttgttt 41325749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 25686025 - 25686124
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatatat 274  Q
    |||||||||||||| ||   |||||||||||||||||||||||||||| |||||||| |||||||     |||||||||||||| |||||||||| ||||    
T  25686025 ttttttactcaaccacatggtttggtttggtttgcggtttttatttta-caaccaaaccaaaccaagttgcaacataagaaaaacactaattaaacatat 25686123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 21069542 - 21069413
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| | | |||||||||| |||||||||||||||||| | ||  |||||| || || ||||| |||| ||||||| ||||||||||||     
T  21069542 aaccaaaccaaaccgcgatataagaaaaacactaattaaatatatgtcacttacaccaatactcgtataaacttaatgaaaactttaataaaatgacata 21069443  T
Q  329 --tttttgttgttgttaagtttcttctttg 356  Q
      |||||  | |||||||||||||||||||    
T  21069442 tgttttttctcttgttaagtttcttctttg 21069413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 329
Target Start/End: Complemental strand, 8485248 - 8485063
Alignment:
Q  156 atttgatttagatatattcaaatcattt-tttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc----------aaatcaaacc 244  Q
    ||||||||  ||| ||||| |||||||| ||||||||||||||   ||||||  ||||||||||||| ||||||||||||          ||| ||||||    
T  8485248 atttgattcggatgtattcgaatcatttatttactcaaccgcatggtttggtccggtttgcggttttgattttaccaaccgaactaaaccaaaccaaacc 8485149  T
Q  245 acaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
     ||| |||||||||| |||||| |||||||| ||   ||  |||||| ||||||||| |||||| ||||||| |||||||||||||    
T  8485148 gcaatataagaaaaacactaatcaaatatatatcctctagaccaatactcatagaaattcaatgtaaactttaataaaatgacatt 8485063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 18536314 - 18536384
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctt 354  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||| |||||  | |||||||||||||||||    
T  18536314 ccaatactcatataaactaaatggaaacttttataaaatgacatattttttctcttgttaagtttcttctt 18536384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 6102314 - 6102246
Alignment:
Q  286 caatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctt 354  Q
    ||||| ||||| ||| |||||| |||||||||||||||||||||||||  |  ||||||||||||||||    
T  6102314 caatactcataaaaattcaatgaaaacttttataaaatgacatttttttctcgtgttaagtttcttctt 6102246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 45983855 - 45983811
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  45983855 tttggtttggtttgcggttttcattttaccaaccgaatcaaacca 45983811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 7763762 - 7763801
Alignment:
Q  294 atagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7763762 atagaaactcaatgaaaacttttataaaatgacatttttt 7763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 348
Target Start/End: Original strand, 18319193 - 18319304
Alignment:
Q  239 caaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgtt 336  Q
    ||||| ||||||||||||||| | |||||||| |||||||   ||  ||||||   |||||||||||||||||| |||||| ||||||||| |||||| |    
T  18319193 caaacaacaacataagaaaaacattaattaaacatatgtcatctagaccaatacaaatagaaactcaatggaaatttttatgaaatgacatatttttggt 18319292  T
Q  337 gttgttaagttt 348  Q
     |||||||||||    
T  18319293 cttgttaagttt 18319304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 18396796 - 18396685
Alignment:
Q  239 caaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgtt 336  Q
    ||||| ||||||||||||||| | |||||||| |||||||   ||  ||||||   |||||||||||||||||| |||||| ||||||||| |||||| |    
T  18396796 caaacaacaacataagaaaaacattaattaaacatatgtcatctagaccaatacaaatagaaactcaatggaaatttttatgaaatgacatatttttggt 18396697  T
Q  337 gttgttaagttt 348  Q
     |||||||||||    
T  18396696 cttgttaagttt 18396685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 10777946 - 10778004
Alignment:
Q  212 ttgcggtttttattttaccaaccaaatcaaaccacaacataaga-aaaaactaattaaa 269  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||    
T  10777946 ttgcggtttttattttagcaaccgaaccaaaccacaacataagataaacactaattaaa 10778004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 15724273 - 15724237
Alignment:
Q  292 tcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15724273 tcatagaaactcaatggaaacttttataaaattacat 15724237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 17845371 - 17845323
Alignment:
Q  211 tttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa 259  Q
    |||||||||||||||||| ||||||||| ||||| ||| ||||||||||    
T  17845371 tttgcggtttttattttatcaaccaaattaaaccgcaatataagaaaaa 17845323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 27743890 - 27743826
Alignment:
Q  170 tattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaac 233  Q
    ||||||||||| ||||| |||||||||||    |||||||||||||||||||| |||||||||||    
T  27743890 tattcaaatcaatttttcactcaaccgcatgggttggtttggtttgcggttttaattttaccaac 27743826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 29701062 - 29701019
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||    
T  29701062 ccaatactcatagaagctcaatgaaaacttttataaaatgacat 29701019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 45226911 - 45226836
Alignment:
Q  156 atttgatttagatatattcaaatcattt-tttactcaaccgcacaatttggtttggtttgcggtttttattttacc 230  Q
    |||||||| |||| |||||| ||||||| |||||||||||  |  ||||||||| ||||||| |||||||||||||    
T  45226911 atttgattcagatgtattcatatcatttctttactcaaccatatgatttggtttagtttgcgatttttattttacc 45226836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 4054356 - 4054418
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    |||||||| ||||||||||||||| | | | |||||| ||||||||||| ||||| |||||||    
T  4054356 attttttattcaaccgcacaatttaggtagatttgcgatttttattttatcaaccgaatcaaa 4054418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 5121947 - 5121989
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||    
T  5121947 tggtttggtttgcggttttcattttaccaactaaaccaaacca 5121989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 18319119 - 18319181
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    ||||||||||||| | ||   |||||||||||  |||||||||||||||||||||||| ||||    
T  18319119 attttttactcaatctcatggtttggtttggtccgcggtttttattttaccaaccaaaccaaa 18319181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 18396870 - 18396808
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    ||||||||||||| | ||   |||||||||||  |||||||||||||||||||||||| ||||    
T  18396870 attttttactcaatctcatggtttggtttggtccgcggtttttattttaccaaccaaaccaaa 18396808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 23449498 - 23449588
Alignment:
Q  156 atttgatttagatatattcaaatcatttt-ttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||| ||| |||||  |||||||| |||||||||||||   |||||||  |||||| ||||| |||||||||||| || |||||||    
T  23449498 atttgatttggatgtattcggatcatttttttactcaaccgcatggtttggttcagtttgcagttttgattttaccaaccgaaccaaacca 23449588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 15724370 - 15724313
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||   |||||||||||||||  ||||||||||||||||| || |||||||    
T  15724370 ctcaaccgcatggtttggtttggtttgcaatttttattttaccaaccgaaccaaacca 15724313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 23119852 - 23119929
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaacc-----aaatcaaaccacaacataagaaaaaa 260  Q
    ||||||||||  |||||||| |||||||| |||| ||||||||||||     ||| |||||| |||||||||||||||    
T  23119852 ctcaaccgcatgatttggttcggtttgcgattttcattttaccaaccgaactaaaccaaaccgcaacataagaaaaaa 23119929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 48602110 - 48602203
Alignment:
Q  233 ccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatga 325  Q
    ||||| ||||||||||||||| ||||| | |||||||| ||||||  | ||  |||||| ||| | ||||||||| |||| |||||||||||||    
T  48602110 ccaaaccaaaccacaacataaaaaaaacattaattaaacatatgttacctagaccaatactcaaataaactcaatagaaaattttataaaatga 48602203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 3999278 - 3999246
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaac 233  Q
    ||||||| |||||||||||||||||||||||||    
T  3999278 tttggttcggtttgcggtttttattttaccaac 3999246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 19753075 - 19753139
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  19753075 ttttttactcaatagcaagattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 19753139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 19786731 - 19786667
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  19786731 ttttttactcaatagcaagattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 19786667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 28148308 - 28148244
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||| ||||||||  |||| ||| ||||||||||||| ||||||| |||| || |||||||    
T  28148308 ttttttacgcaaccgcatgattttgttcggtttgcggttttgattttactaaccgaaccaaacca 28148244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 41260593 - 41260465
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatgga-aacttttataaaatgacat 328  Q
    ||||||| |||||  |||||||||||||| ||||||||||  ||||||   ||| |||||| |||||||||||| ||| |    ||||||||||||||||    
T  41260593 aaccaaaccaaactgcaacataagaaaaacactaattaaacttatgtcatctaaaccaatactcatagaaactccatgaattttttttataaaatgacat 41260494  T
Q  329 -tttttgttgttgttaagtttcttctttg 356  Q
     |||||  | |||| ||||||||||||||    
T  41260493 attttttctcttgtaaagtttcttctttg 41260465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 45150530 - 45150594
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  45150530 ttttttactcaatagcatgattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 45150594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 48292989 - 48293033
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||||||||||| |||||||| ||| || |||||||    
T  48292989 tttggtttggtttgcggttttcattttacctacccaaacaaacca 48293033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 359
Target Start/End: Complemental strand, 30753103 - 30752924
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    ||||||||||||| ||| | |||||||  ||||||||||||||||||||||||| || |||||| |||||||||||||| | ||| ||||| ||| || |    
T  30753103 ttttttactcaactgcatagtttggttcagtttgcggtttttattttaccaaccgaaccaaaccgcaacataagaaaaacattaactaaatctatatcac 30753004  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttgttt 359  Q
    |||| |||||| ||||||||||  |||||||||||||||| ||| ||||  |||  | || |||||||||||||||||||    
T  30753003 ataaaccaatactcatagaaacataatggaaacttttatacaataacatacttttctcttattaagtttcttctttgttt 30752924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 12108149 - 12108305
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    |||| |||||||||||||||| |||||| |||||||| |||||| |||||||| ||||| || |||||||| |||||  | ||  |||||| ||||||||    
T  12108149 tttgatttggtttgcggttttcattttatcaaccaaaccaaaccgcaacataataaaaacacaaattaaatttatgtaacctagaccaatactcatagaa 12108248  T
Q  300 actcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    ||||||| |||| |||||||||||||||| |||||  | |||||||||||||||||||    
T  12108249 actcaat-gaaaattttataaaatgacatattttttctcttgttaagtttcttctttg 12108305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 343
Target Start/End: Original strand, 13531823 - 13531984
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaaact-aattaaatatatgtctcat 281  Q
    ||||||||||   |||||||||||||||| |||| ||||||||||||||| |||||||     ||||||||||||||  | ||||||| |||| || | |    
T  13531823 ctcaaccgcatggtttggtttggtttgcgattttcattttaccaaccaaaccaaaccaaaccgcaacataagaaaaatgttaattaaacatatctcacct 13531922  T
Q  282 aatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgtta 343  Q
    |  |||||| ||||||||| ||||||||||||||||||||||||| |||||| || ||||||    
T  13531923 agaccaatactcatagaaattcaatggaaacttttataaaatgacttttttttttcttgtta 13531984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 359
Target Start/End: Original strand, 19134668 - 19134832
Alignment:
Q  201 tttggtttggtttgcggtttttattttacc-----aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattca 294  Q
    ||||||||||||||| ||||| ||||||||     ||||||| |||||| |||||||||||||| ||||||||||| |||||| | ||    |||| |||    
T  19134668 tttggtttggtttgcagttttcattttaccaaccgaaccaaaccaaaccgcaacataagaaaaacactaattaaatctatgtcacctagataaatactca 19134767  T
Q  295 tagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||| ||||||||||||||| ||||||||| |||||  | ||||||||||||||||||||||    
T  19134768 tagaaacttaatggaaacttttat-aaatgacatattttttctcttgttaagtttcttctttgttt 19134832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 29049074 - 29048903
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    |||||||||||||||||   ||||||||||||||||||||| ||||||||| |||||     || ||| ||| |||||| | ||||||||||||| ||      
T  29049074 ttttttactcaaccgcatggtttggtttggtttgcggttttgattttaccagccaaa-----ccgcaatataggaaaaacattaattaaatatatatcat 29048980  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
     ||  |||||| ||||| |||||||||| ||||||| |||||||||||||||||  |  ||||||||||||||||||    
T  29048979 ttagaccaatactcataaaaactcaatgaaaactttaataaaatgacatttttttctcatgttaagtttcttctttg 29048903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 7169650 - 7169778
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    ||||||| ||||||| ||||| |||||||||||| || |||||  ||| |||||||||| ||||||||||||||| ||  |||  |||||| ||||||||    
T  7169650 tttggttcggtttgcagttttgattttaccaaccgaaccaaactgcaatataagaaaaacactaattaaatatatatcatatagaccaatactcatagaa 7169749  T
Q  300 actcaatggaaacttttataaaatgacat 328  Q
    | |||||| ||||||| ||||||||||||    
T  7169750 attcaatgaaaactttaataaaatgacat 7169778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 32190339 - 32190408
Alignment:
Q  287 aatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||    
T  32190339 aatattcatagaaactcaatggaaacttttataaaatgacatattttttctcttgttaagtttcttcttt 32190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 6267565 - 6267463
Alignment:
Q  154 gtatttgatttagatatattcaaatcat-tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacata 252  Q
    ||||||| || |||| |||||| ||||  ||||||||||||||||   ||||||||||||||||||||||||||||  ||||||| |||||| |||||||    
T  6267565 gtatttggttcagatgtattcatatcacatttttactcaaccgcatggtttggtttggtttgcggtttttattttaaaaaccaaaccaaaccgcaacata 6267466  T
Q  253 aga 255  Q
    |||    
T  6267465 aga 6267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 891974 - 892066
Alignment:
Q  262 taattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttct 353  Q
    ||||||||| |||||| | ||  |||||| | ||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||    
T  891974 taattaaatctatgtcacctataccaatacttatagaaactcaatggaaacttttataaaatgacatgttttttctcttgttaagtttcttct 892066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 17306839 - 17306719
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaac--taattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||||||||||| |||||||||| |||||  ||| |||||||||||||  ||  | |||| ||||||||||| |||| |||||||||| |||||||||    
T  17306839 aaccaaatcaaacctcaacataagagaaaacactaactaaatatatgtcttctacactaatactcatagaaacttaatgaaaacttttat-aaatgacat 17306741  T
Q  329 tttttgttgttgttaagtttctt 351  Q
     |||| || ||||||||||||||    
T  17306740 attttctt-ttgttaagtttctt 17306719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 8064968 - 8064880
Alignment:
Q  235 aaatcaaaccacaacataagaaaaa--actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaa 321  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||   ||   ||||| |||||||||||||||| |||||||||||||    
T  8064968 aaatcaaaccgcaacataagaaaaaacactaattaaatatatgtcatctatgtcaatactcatagaaactcaatgaaaacttttataaa 8064880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 324
Target Start/End: Complemental strand, 14564987 - 14564813
Alignment:
Q  156 atttgatttagatatattcaaatcattt--tttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caa 248  Q
    ||||| ||| ||| ||||||||||||||  |||||||||| |||   |||||||| |||||| ||||||||| ||| |||| || |||||||     |||    
T  14564987 atttggttttgatgtattcaaatcatttcttttactcaactgcatggtttggtttagtttgcagtttttattatacgaaccgaaccaaaccaaattgcaa 14564888  T
Q  249 cataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatg 324  Q
    ||||||||||| ||||||||||||||||| ||| |  |||| | ||||| |||||||||| ||||||||| ||||||    
T  14564887 cataagaaaaacactaattaaatatatgtatca-agaccaa-actcataaaaactcaatgaaaacttttaaaaaatg 14564813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 4577625 - 4577477
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    ||||||||| |||||||   ||||||| ||||||| ||||||||||||  |||||||  ||||| ||||||||||||||  |||||||||  ||  ||      
T  4577625 ttttttacttaaccgcaaggtttggttcggtttgcagtttttattttattaaccaaactaaaccgcaacataagaaaaacgctaattaaacctaattcag 4577526  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
     ||  |||||| ||||||||| |||||| |||||||||||||| |||||    
T  4577525 gtagaccaatactcatagaaattcaatgaaaacttttataaaacgacat 4577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 356
Target Start/End: Complemental strand, 9686613 - 9686405
Alignment:
Q  156 atttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caac 249  Q
    ||||||||  ||| ||||| ||||||||||| |||||||||||   |||| || || |||||||||| |||||||||||| || |||||||     |||     
T  9686613 atttgattcggatgtattcgaatcatttttttactcaaccgcatggtttgattcggattgcggttttgattttaccaaccgaaccaaaccaaactgcaat 9686514  T
Q  250 ataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtt 347  Q
     ||||||||| ||||||||||||||| ||   ||   ||||| ||||||||| |||||| ||||||| ||||||| | || |||||  | ||||||||||    
T  9686513 gtaagaaaaacactaattaaatatatatcatctagatcaatactcatagaaattcaatgaaaactttaataaaataaaatattttttctcttgttaagtt 9686414  T
Q  348 tcttctttg 356  Q
    |||||||||    
T  9686413 tcttctttg 9686405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 11417583 - 11417519
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||| ||||||||  |||||||||||||||||||||| |||||||||| | ||||||||||    
T  11417583 ttttttacccaaccgcatgatttggtttggtttgcggttttgattttaccaatcgaatcaaacca 11417519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 13858948 - 13859068
Alignment:
Q  183 ttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcat 281  Q
    |||||||||||| ||  |||||||| ||||| | |||||||||||||||||| || |||||| ||| ||||||||||  |||||| ||  |||||| |||    
T  13858948 ttttactcaaccacattatttggttcggtttacagtttttattttaccaaccgaaccaaaccgcaagataagaaaaatgctaattcaacctatgtcacat 13859047  T
Q  282 aatccaatattcatagaaact 302  Q
    |||| | || |||||||||||    
T  13859048 aatcaagtactcatagaaact 13859068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 22414343 - 22414165
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaatt-aaatatatgtctc 279  Q
    |||||||||||| |||   ||||||| | |||| |||||| ||||||| |||| || |||||| ||| |||||||||| ||||||  |||||||| ||      
T  22414343 tttttactcaactgcatggtttggttcgatttgtggttttcattttacgaaccgaaccaaaccgcaatataagaaaaacactaatccaaatatatatcat 22414244  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgac--attttttgttgttgttaagtttcttctttg 356  Q
     ||  |||||| ||| | ||| |||||||||||||| ||||||||||  |||||||  | |||||||||||||||||||    
T  22414243 ctagaccaatactcacataaattcaatggaaactttaataaaatgacatatttttttctcttgttaagtttcttctttg 22414165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 16971410 - 16971480
Alignment:
Q  286 caatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| |||||  | ||||||||||||||||||    
T  16971410 caatactcatagaaacacaatggaaactttaataaaatgacatattttttcttttgttaagtttcttcttt 16971480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 15837261 - 15837316
Alignment:
Q  204 ggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa 259  Q
    ||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||||    
T  15837261 ggtttggtttgtggtttttattttagcaaccgaaccaaaccgcaacataagaaaaa 15837316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 6400325 - 6400212
Alignment:
Q  217 gtttttattttaccaaccaaatcaaaccacaacataag--aaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaactt 314  Q
    |||| ||||||||||||  || |||||| ||| |||||  |||| ||||||||||||||| ||   ||  |||||| ||||| ||| |||||||||||||    
T  6400325 gtttgtattttaccaacggaaccaaacctcaatataagctaaaacactaattaaatatatatcatctagaccaatactcatataaattcaatggaaactt 6400226  T
Q  315 ttataaaatgacat 328  Q
    | ||||||||||||    
T  6400225 taataaaatgacat 6400212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 31945075 - 31945147
Alignment:
Q  250 ataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaa 321  Q
    |||||||||| ||||||||||||||| || | ||| | |||||||||||||| |||| ||||||||| |||||    
T  31945075 ataagaaaaacactaattaaatatatatcacctaaactaatattcatagaaagtcaaaggaaactttaataaa 31945147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 24644609 - 24644657
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||| |||||||| ||||||| ||||||| |||||||||||| ||||    
T  24644609 ccaatactcatagaacctcaatgaaaactttaataaaatgacatatttt 24644657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 327
Target Start/End: Original strand, 12041140 - 12041287
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||   ||||||||| ||||||      
T  12041140 ttttttactcaaccgcatagtttggtttggtttgcggttttcattttaccaaccaaaccaaaccgcaacataagaaaaactttaattaaatctatgtcat 12041239  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgaca 327  Q
     ||  ||| || |||||||||||||||| |||||||||||||| ||||    
T  12041240 ctagaccattactcatagaaactcaatgaaaacttttataaaacgaca 12041287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 15320139 - 15320316
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    |||||||||||||| ||   ||||||||||||||||||||||||||||||| |  || |||||| |||||||||||||| | |||||||| ||||||| |    
T  15320139 ttttttactcaaccacatggtttggtttggtttgcggtttttattttaccatctgaaccaaaccgcaacataagaaaaacattaattaaacatatgtcac 15320238  T
Q  280 ataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     ||  || ||| | |||||||||||||| |||||||||||||||| ||| |||||  | ||| |||||||||||||||    
T  15320239 ctagacccatacttatagaaactcaatgaaaacttttataaaatggcatattttttctcttgataagtttcttctttg 15320316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 356
Target Start/End: Original strand, 27301015 - 27301218
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataag 254  Q
    ||||||||| ||| |||||  |||| |||||| ||||||||||   ||||||||||||||||||||| ||||||| ||||||| |||||  |||||||||    
T  27301015 atttgatttggatgtattcggatcacttttttcctcaaccgcatggtttggtttggtttgcggttttcattttacaaaccaaaccaaacagcaacataag 27301114  T
Q  255 aaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt-tgttgttaagtttcttc 352  Q
    ||||| | |||||||||  ||||| | ||   ||||| |||||||||||| ||||||||| ||| ||||| |||| |||| | | |||||||| ||||||    
T  27301115 aaaaatattaattaaattcatgtcacctagatcaatactcatagaaactccatggaaactattaaaaaattacatattttctctcttgttaagcttcttc 27301214  T
Q  353 tttg 356  Q
    ||||    
T  27301215 tttg 27301218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 10242306 - 10242444
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatcc 286  Q
    ||||||||||   ||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||| | |||| ||| | |||||   |||  |    
T  10242306 ctcaaccgcatgttttggtttggtctgcggtttttattttaccaaccaaaccaaacagcaacataagaaaaatattaatcaaaaacatgtcagttaaatc 10242405  T
Q  287 aatattcatagaaactcaatggaaacttttataaaatga 325  Q
    | || ||||||||||||||| ||||||||||||||||||    
T  10242406 agtactcatagaaactcaattgaaacttttataaaatga 10242444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 22014439 - 22014317
Alignment:
Q  235 aaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||   ||   ||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  22014439 aaattaaaccacaacataagaaaaacattaattaaatttatgtcatctagatcaatactcatagaatctcaatggaaacttttataaaatgacatatttt 22014340  T
Q  334 gttgttgttaagtttcttctttg 356  Q
      | |||||||||||||||||||    
T  22014339 tctcttgttaagtttcttctttg 22014317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 41166698 - 41166511
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc----------aaatcaaaccacaacataagaaaaa-actaattaaa 269  Q
    ||||| |||||||||||   |||| |||||||||||||||| ||||||||||||          ||| ||||||||||||||| ||||  ||||||||||    
T  41166698 tttttcactcaaccgcatggtttgatttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccacaacataataaaagcactaattaaa 41166599  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
    | |||||| | ||  ||||||||||||||||||||||| |   |||||||||||||||| |||||  | |||||||||||||||||||    
T  41166598 tttatgtcacctagaccaatattcatagaaactcaatgaatttttttataaaatgacatgttttttctcttgttaagtttcttctttg 41166511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 355
Target Start/End: Complemental strand, 1331556 - 1331351
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttacc-----aaccaaatcaaaccacaac 249  Q
    ||||||||| ||| |||||  |||| |||||| ||||||| ||   ||||||||||||||| |||||||||||| |     ||||||| |||||| ||||    
T  1331556 atttgatttggatgtattcggatcacttttttcctcaaccacatggtttggtttggtttgccgtttttattttatcaactgaaccaaaccaaaccgcaac 1331457  T
Q  250 ataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttg-ttgttaagtt 347  Q
    |||||||||| ||||||||||| |||||  ||||  | |||| |||||| |||||||||||||||||||| |||||||||  ||| ||| ||||||||||    
T  1331456 ataagaaaaacactaattaaatctatgttacatagacaaatactcatag-aactcaatggaaacttttat-aaatgacatacttttttgcttgttaagtt 1331359  T
Q  348 tcttcttt 355  Q
    | ||||||    
T  1331358 ttttcttt 1331351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 13194445 - 13194259
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttatttta----------ccaaccaaatcaaaccacaacataagaaaaa-actaattaaat 270  Q
    ||||||||||||| ||   ||||||||| ||||||||||||||||||          | ||||||| |||||||||||||||||||||   |||||||||    
T  13194445 tttttactcaaccacatggtttggtttgatttgcggtttttattttacggaccgaatcaaaccaaaccaaaccacaacataagaaaaactttaattaaat 13194346  T
Q  271 atatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt---tgttgttaagtttcttctttg 356  Q
    |||  || | ||  |||||| ||||||||| ||||||||||||||||||||||||||| |||| |   | |||||||||||||||||||    
T  13194345 ata--tcacctagaccaatactcatagaaaatcaatggaaacttttataaaatgacatattttttctctcttgttaagtttcttctttg 13194259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 43452650 - 43452517
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaa--aaaactaattaaatatatgtct 278  Q
    ||||||||||||||| | | || | ||||||||||||||||||||||||     ||||||||||||||||||||||  |||| |||||||| |||||||     
T  43452650 ttttttactcaaccgtatagtt-gatttggtttgcggtttttattttac-----aaatcaaaccacaacataagaaaaaaaattaattaaacatatgtca 43452557  T
Q  279 cataatccaatattcatagaaactcaatggaaacttttat 318  Q
    |  |  |||||||| |||||||||||||| ||| ||||||    
T  43452556 ccaagaccaatatttatagaaactcaatgcaaatttttat 43452517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 36500165 - 36500218
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc 234  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  36500165 ttttttactcaaccgcatagtttggtttggttttcggtttttattttaccaacc 36500218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 356
Target Start/End: Complemental strand, 1537098 - 1536941
Alignment:
Q  200 atttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaa 299  Q
    ||||||||||||||| ||||||||||||| ||||| || |||||| |||||||| ||||  |||||  ||  |||||| | ||  | |||| || ||| |    
T  1537098 atttggtttggtttgtggtttttattttaacaaccgaaccaaaccgcaacataa-aaaatgctaatggaacttatgtcacctagacgaatactcgtagga 1537000  T
Q  300 actcaatggaaacttttataaaatgac--attttttgttgttgttaagtttcttctttg 356  Q
    |||||||  ||||||||||||||||||  |||||||  | ||||||| |||||||||||    
T  1536999 actcaataaaaacttttataaaatgacatatttttttctcttgttaaatttcttctttg 1536941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 11050949 - 11051135
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccaca-----acataagaaaaaac--taattaaatata 273  Q
    ||||||||||||| | |  ||||||||||||||| |||||||||||||| ||   || ||||||| |     ||||||||||||||  ||||||||| ||    
T  11050949 ttttttactcaactgtaggatttggtttggtttgtggtttttattttactaattgaaccaaaccaaactgtgacataagaaaaaacactaattaaatcta 11051048  T
Q  274 tgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt-tgttgttaagtttcttctttgttt 359  Q
    |||| | ||  |||||| |  || |||||||||  |||||||||| ||||||||| |||| | | | ||||||||||||||||||||    
T  11051049 tgtcacttagaccaatacttttaaaaactcaataaaaacttttatgaaatgacatgttttttctctcgttaagtttcttctttgttt 11051135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 28790985 - 28790926
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaa 241  Q
    ||||||| |||||| |  |||||||| |||||||||||||||||||||||||||||||||    
T  28790985 tttttacacaaccgtatgatttggttcggtttgcggtttttattttaccaaccaaatcaa 28790926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 11678417 - 11678352
Alignment:
Q  294 atagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||||||||| ||||||| |||||||||||| ||||  | || |||||||||||||||||||    
T  11678417 atagaaactcaatgcaaactttaataaaatgacatatttttctcttcttaagtttcttctttgttt 11678352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 11678524 - 11678459
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||| | ||||||   ||||||||||||||||||||| ||||||||||||||| |||||||    
T  11678524 attttttacgcgaccgcatggtttggtttggtttgcggttttgattttaccaaccaaaccaaacca 11678459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 11695895 - 11695830
Alignment:
Q  294 atagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||||||||| ||||||| |||||||||||| ||||  | || |||||||||||||||||||    
T  11695895 atagaaactcaatgcaaactttaataaaatgacatatttttctcttcttaagtttcttctttgttt 11695830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 20496815 - 20496746
Alignment:
Q  286 caatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttcttt 355  Q
    ||||| |||||||||||||| ||||||| |||||||||||||| ||||  | ||||||| ||||||||||    
T  20496815 caatactcatagaaactcaacggaaactattataaaatgacatgtttttctcttgttaaatttcttcttt 20496746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 5862204 - 5862268
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||||||||||||   ||||||| |||||| |||||| ||||||||||||||| |||||||    
T  5862204 ttttttactcaaccgcatgttttggttcggtttgtggttttgattttaccaaccaaaccaaacca 5862268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 30761134 - 30761237
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataag 254  Q
    ||||||||||||| |||||  |||| ||||||||||||| |||   |||||||  |||||||||||||| |||||||||  || |||||| |||||||||    
T  30761134 atttgatttagatgtattcggatcacttttttactcaactgcatg-tttggttcagtttgcggtttttactttaccaacagaaccaaaccgcaacataag 30761232  T
Q  255 aaaaa 259  Q
    |||||    
T  30761233 aaaaa 30761237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 31719678 - 31719782
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaa-tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||  | ||  |||||| | ||||||||||| ||||||||||| |||||||||||    
T  31719678 aaccaaatcaaaccgcaacataataaaaccactaattaaaatatatgttacctagaccaatacttatagaaactcagtggaaacttttgtaaaatgacat 31719777  T
Q  329 ttttt 333  Q
     ||||    
T  31719778 atttt 31719782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 27898761 - 27898689
Alignment:
Q  286 caatattcatagaaactcaatggaaacttttataaaatgacattttttgttgt--tgttaagtttcttctttg 356  Q
    ||||| |||||||||||||||| ||||||||||||||| |||| |||| || |  ||||||||| ||||||||    
T  27898761 caatactcatagaaactcaatgaaaacttttataaaattacatatttttttctcgtgttaagttccttctttg 27898689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 11695981 - 11695937
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||    
T  11695981 tttggttcggtttgcggttttgattttaccaaccaaaccaaacca 11695937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 29172248 - 29172169
Alignment:
Q  154 gtatttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaac 233  Q
    ||||||||||  ||| ||||| | ||||||||||||||||||||   |||| |||||||||  ||||| |||||||||||    
T  29172248 gtatttgattcggatgtattctagtcattttttactcaaccgcatggtttgatttggtttgaagttttgattttaccaac 29172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 36965643 - 36965537
Alignment:
Q  158 ttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttacc-----aaccaaatcaaaccacaacat 251  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||  | |||||||| ||||| ||||||||||||||     |||||||  ||||| ||||||    
T  36965643 ttgatttggatgtattcaaataatttttttactcaaccgcattagttggtttgatttgc-gtttttattttacctattaaaccaaacaaaaccgcaacat 36965545  T
Q  252 aagaaaaa 259  Q
    ||||||||    
T  36965544 aagaaaaa 36965537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 44085973 - 44085870
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    ||||||| |||||| ||||||||||||||  | ||||||| |||| || | ||  |||||| || | |||| ||||| |||||||||||||||||||||     
T  44085973 aaccaaaccaaaccgcaacataagaaaaatgttaattaaaaatatctcacctagaccaatactcgtggaaattcaattgaaacttttataaaatgacata 44085874  T
Q  330 tttt 333  Q
    ||||    
T  44085873 tttt 44085870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 12884857 - 12884775
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaac 312  Q
    ||||||| |||||| ||| ||| |||||| ||||||||||||||| || | ||  |||||| | |||||||||||||||||||    
T  12884857 aaccaaaccaaaccgcaatatatgaaaaacactaattaaatatatatcacctagaccaatacttatagaaactcaatggaaac 12884775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 12841866 - 12841833
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaacc 234  Q
    ||||||||||||||||||||| ||||||||||||    
T  12841866 tttggtttggtttgcggttttcattttaccaacc 12841833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 21254527 - 21254478
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaa-tgacatttttt 333  Q
    |||||| | ||||||||||||| ||||||||||||||| |||||||||||    
T  21254527 ccaatacttatagaaactcaatcgaaacttttataaaattgacatttttt 21254478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 17763238 - 17763190
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttatttta 228  Q
    ||||||||||||||| || | ||||||||| ||| ||||||||||||||    
T  17763238 attttttactcaaccacatagtttggtttgatttacggtttttatttta 17763190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 21480477 - 21480525
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||||||||||||| |  ||||||||||||||||||| ||| |||||    
T  21480477 ccaatattcatagaaatttgatggaaacttttataaaataacaattttt 21480525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 201 - 333
Target Start/End: Complemental strand, 27675033 - 27674900
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaa 299  Q
    ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||||   | |||||| ||||||| | ||  |||||| ||||||||    
T  27675033 tttggtttggtttgcggtttaaattttaccaaccaaaccaaaccgcaacataagaaaaatgttcattaaacatatgtcccctagaccaatactcatagaa 27674934  T
Q  300 actcaatggaaacttttataaaatgacatttttt 333  Q
    ||||| ||||||||||||||||||||||| ||||    
T  27674933 actcattggaaacttttataaaatgacatatttt 27674900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 155 - 359
Target Start/End: Complemental strand, 28442039 - 28441823
Alignment:
Q  155 tatttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca--------- 245  Q
    |||||| ||||||| |||| |||| |||||||||||||||| |   ||||||||||||| |||||||||||| ||||||| || |||||||             
T  28442039 tatttggtttagatgtatttaaataattttttactcaaccgtattgtttggtttggtttacggtttttatttaaccaaccgaaccaaaccaaaccaaacc 28441940  T
Q  246 --caacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgtt 342  Q
      ||| ||||||||||| |||| |||||||| |  ||||   ||||| ||||| |||||||||| |||||||||||||||||||| || ||  | |||||    
T  28441939 ggcaatataagaaaaaattaatcaaatatatataacatagatcaatactcataaaaactcaatgaaaacttttataaaatgacatattctttcttttgtt 28441840  T
Q  343 aagtttcttctttgttt 359  Q
    |||||||||||||||||    
T  28441839 aagtttcttctttgttt 28441823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 12193029 - 12193186
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaa--atcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatag 297  Q
    ||||||| ||||||||||||| |||||||||||| |  |  ||||| ||| ||||||| || | ||||||||||||| || | ||  |||||| ||||||    
T  12193029 tttggttcggtttgcggttttgattttaccaaccgatcactaaaccgcaatataagaagaacattaattaaatatatatcacctagaccaatactcatag 12193128  T
Q  298 aaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
    ||| |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||    
T  12193129 aaattcaatggaaactttaataaaatgacatttttt-ttcttgttaagttttttctttg 12193186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 12437457 - 12437614
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaa--atcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatag 297  Q
    ||||||| ||||||||||||| |||||||||||| |  |  ||||| ||| ||||||| || | ||||||||||||| || | ||  |||||| ||||||    
T  12437457 tttggttcggtttgcggttttgattttaccaaccgatcactaaaccgcaatataagaagaacattaattaaatatatatcacctagaccaatactcatag 12437556  T
Q  298 aaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttg 356  Q
    ||| |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||    
T  12437557 aaattcaatggaaactttaataaaatgacatttttt-ttcttgttaagttttttctttg 12437614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 13325836 - 13325657
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctc 279  Q
    |||||||||||||||||   ||||||| ||||||||||||| |||||| |||||||| |||||| ||| |||||||||| | ||||||||||||| |       
T  13325836 ttttttactcaaccgcatggtttggttcggtttgcggttttgattttatcaaccaaaccaaaccgcaatataagaaaaacaataattaaatatatattat 13325737  T
Q  280 a--taatccaatattcatagaaactcaatggaaacttttataaaatgac-attttttgttgttgttaagtttcttctttg 356  Q
    |  ||  |||||| ||||||||| |||||||| | ||| |||||||||| ||||||| |  || ||||||||||||||||    
T  13325736 atctagaccaatactcatagaaattcaatggagattttaataaaatgacaattttttctcctttttaagtttcttctttg 13325657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 1271617 - 1271490
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||  || | ||  |||||| |||||||||||||||||||||||| ||||||||| ||     
T  1271617 aaccaaaccaaaccgcaatataagaaaaacactaattaaatatacatcacttagaccaatactcatagaaactcaatggaaactttaataaaatgatata 1271518  T
Q  329 tttttgttgttgttaagtttcttctttg 356  Q
    |||||  | |||||||||||||||||||    
T  1271517 ttttttctcttgttaagtttcttctttg 1271490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 22810787 - 22810890
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||   ||  |||||| |||||||||||||| ||||| ||| |||||||||||||    
T  22810787 aaccaaatcaaaccacaatataagaaaaacactaattaaatatatatcatctagaccaatactcatagaaactcaacggaaattttaataaaatgacatt 22810886  T
Q  330 tttt 333  Q
    ||||    
T  22810887 tttt 22810890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 359
Target Start/End: Original strand, 24681686 - 24681817
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgac--a 327  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||| ||   ||   ||||| | ||| |||||||||||||||||| ||||||||||  |    
T  24681686 aaccaaaacaaaccacaatataagaaaaacactaattaaatatatatcatctagatcaataattataaaaactcaatggaaactttaataaaatgacata 24681785  T
Q  328 ttttttgttgttgttaagtttcttctttgttt 359  Q
    ||||||  | ||||||||||||||||||||||    
T  24681786 tttttttctcttgttaagtttcttctttgttt 24681817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 12659869 - 12659971
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    ||||||| |||||||||||||| |||||| | |||||||| ||||||| |||||  ||||| ||||||||||||||| ||||||| |||||||||||||     
T  12659869 aaccaaaccaaaccacaacataggaaaaacattaattaaacatatgtcacataaatcaatactcatagaaactcaat-gaaacttctataaaatgacata 12659967  T
Q  330 tttt 333  Q
    ||||    
T  12659968 tttt 12659971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 18754951 - 18755049
Alignment:
Q  255 aaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt-tgttgttaagtttcttct 353  Q
    |||| ||||||||||||||||||  ||  ||||||||||||||||||||||| |||||||||||||||||  ||||||| | | ||||||||||||||||    
T  18754951 aaaacactaattaaatatatgtc--atc-tccaatattcatagaaactcaatagaaacttttataaaatggaattttttttctcttgttaagtttcttct 18755047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 3155596 - 3155723
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaac 301  Q
    |||||||||||||| || |||||| |  ||||||| |||||| |||||||| ||||| ||||||||||||||| |  ||||    |||| ||||||||||    
T  3155596 tggtttggtttgcgtttcttattt-ataaaccaaaccaaaccgcaacataaaaaaaacactaattaaatatatataacatagataaatactcatagaaac 3155694  T
Q  302 tcaatggaaacttttataaaatgacattt 330  Q
    |||||| ||||||||||||||| ||||||    
T  3155695 tcaatgaaaacttttataaaataacattt 3155723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 4785764 - 4785669
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatat 274  Q
    ||||||||||||||||||   ||||||| ||||||| ||||| ||||||| ||||||||||||||  ||  ||||||||| |||||||||||||||    
T  4785764 attttttactcaaccgcatggtttggttcggtttgcagttttgattttacaaaccaaatcaaaccgtaatgtaagaaaaacactaattaaatatat 4785669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 357
Target Start/End: Original strand, 15452210 - 15452393
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccaca-----acataagaaaaa-actaattaaa-tatat 274  Q
    ||||||||||| ||||   ||||||||| ||| ||||| | ||||||| |||||||||||||| ||     |||||| ||||| ||||| |||| | |||    
T  15452210 tttttactcaatcgcatggtttggtttgattttcggttctcattttactaaccaaatcaaaccccaccgcaacataataaaaacactaagtaaaatctat 15452309  T
Q  275 gtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgt 357  Q
     || | ||  |||||| |||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||||||||    
T  15452310 atcacgtagaccaatactcatagaaactcaatggagacttttattaaatgacatattttttttcttgttaaatttcttctttgt 15452393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 9012436 - 9012561
Alignment:
Q  234 caaatcaaaccacaacataagaaaaaac--taattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tt 330  Q
    |||| |||||| |||||||| |||||||  |||||||| ||||||  | ||| |||||| ||| |  |||||||||||||||||||||||||||||| |     
T  9012436 caaaccaaaccgcaacataaaaaaaaacactaattaaacatatgttacctaaaccaatactcaaatgaactcaatggaaacttttataaaatgacatata 9012535  T
Q  331 tttgttgttgttaagtttcttctttg 356  Q
    |||  | |||||||||||||||||||    
T  9012536 ttttctcttgttaagtttcttctttg 9012561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 28072679 - 28072775
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataaga-aaaaactaattaaatatatgtc 277  Q
    ||||||||||||||||   |||||||||||||||||||||||||||| ||||  || |||||  |||||||||| ||| | ||||||||| ||||||    
T  28072679 tttttactcaaccgcatgttttggtttggtttgcggtttttattttagcaactgaaccaaacagcaacataagataaacattaattaaatttatgtc 28072775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 29914017 - 29914089
Alignment:
Q  156 atttgatttagatatattcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttatttt 227  Q
    ||||||||||||| ||||||||||||||||| |||||| || | ||||  |||||||||||||||||||||||    
T  29914017 atttgatttagatgtattcaaatcattttttgactcaatcgtataattcagtttggtttgcggtttttatttt 29914089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 35687879 - 35687968
Alignment:
Q  182 tttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacat-aagaaaaa-actaattaaa 269  Q
    ||||||||||||||||  |||||||||| |||||| |||||||||||  |||| || |||||| |||||| |||||||| ||||||||||    
T  35687879 tttttactcaaccgcatgatttggtttgatttgcgatttttattttagtaaccgaaccaaaccgcaacataaagaaaaacactaattaaa 35687968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 11017481 - 11017430
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaa 232  Q
    ||||||||| |||||||  |||||||||||||||||||||| ||||||||||    
T  11017481 ttttttactaaaccgcatgatttggtttggtttgcggttttgattttaccaa 11017430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 333
Target Start/End: Complemental strand, 44024695 - 44024557
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaa------aaaactaattaaatatatgtctcataatccaatattca 294  Q
    |||||||||||  |||||||| ||||| |||||| || |||||| | | |||||||      |||||||||||||||||| || ||||  | |||| |||    
T  44024695 tttggtttggtccgcggttttgattttcccaacctaaccaaaccgcgatataagaagaaaaaaaaactaattaaatatatatcacatagactaatactca 44024596  T
Q  295 tagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    || ||| |||||||||||||| | |||||||||| ||||    
T  44024595 tataaattcaatggaaactttaacaaaatgacatatttt 44024557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 44334585 - 44334636
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaa 232  Q
    ||||||||||||||| |  |||||||||||||||||||||| ||||||||||    
T  44334585 ttttttactcaaccgtatgatttggtttggtttgcggttttcattttaccaa 44334636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 28802032 - 28801954
Alignment:
Q  255 aaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||| |||||||||| ||||||| | ||   ||||| | |||||||||||||| ||| |||||||||||||||||||||    
T  28802032 aaaacactaattaaacatatgtcacctagatcaatacttatagaaactcaatgtaaatttttataaaatgacatttttt 28801954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 328
Target Start/End: Complemental strand, 30943036 - 30942946
Alignment:
Q  239 caaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||| ||| |||| ||||| |||||||||| ||||||| | ||    |||||| |||||||||||||| ||||||||||||||||||||    
T  30943036 caaaccgcaatataaaaaaaacactaattaaacatatgtcacctagaataatatttatagaaactcaatgaaaacttttataaaatgacat 30942946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 31477772 - 31477816
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||||||||||| |||||||||||| || |||||||    
T  31477772 tttggtttggtttgcggttttcattttaccaaccgaaccaaacca 31477816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 41346339 - 41346291
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  41346339 ccaatactcatagaaactcaatggaagcttttataacatgacatgtttt 41346291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 40436857 - 40436818
Alignment:
Q  294 atagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  40436857 atagaaactcaatggaaatttttataaaatgacatatttt 40436818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 44337167 - 44337105
Alignment:
Q  295 tagaaactcaatggaaacttttataaaatgaca--ttttttgttgttgttaagtttcttcttt 355  Q
    ||||||||||||  |||||||||||||||||||  ||||||  | ||||||||||||||||||    
T  44337167 tagaaactcaatcaaaacttttataaaatgacaatttttttactcttgttaagtttcttcttt 44337105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 40436964 - 40436895
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaa 257  Q
    |||||||||| | |||  ||| |||||||||||| ||||||||||||||| ||||   ||||||||||||    
T  40436964 ctcaaccgcatagttttatttagtttgcggttttcattttaccaaccaaaccaaattgcaacataagaaa 40436895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 11219489 - 11219445
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||| ||||||||||||| |||||||||||| || |||||||    
T  11219489 tttggttcggtttgcggttttgattttaccaaccgaaccaaacca 11219445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 30252663 - 30252703
Alignment:
Q  205 gtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||| |||||||||||||||||||| || |||||||    
T  30252663 gtttggtttacggtttttattttaccaaccgaaccaaacca 30252703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 31477853 - 31477889
Alignment:
Q  292 tcatagaaactcaatggaaacttttataaaatgacat 328  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  31477853 tcatagaaactcaatggaaacttttacaaaattacat 31477889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 36340320 - 36340384
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  36340320 ttttttactcaatagcatgattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 36340384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 333
Target Start/End: Complemental strand, 52632696 - 52632511
Alignment:
Q  156 atttgatttagatatattcaaatca-ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caac 249  Q
    ||||| ||| ||| |||||| |||| ||||||||||||| |||   ||||||||||||||||||||||||||||||||||||| |||||||     ||||    
T  52632696 atttggtttggatgtattcatatcacttttttactcaactgcatggtttggtttggtttgcggtttttattttaccaaccaaaccaaaccaaaccgcaac 52632597  T
Q  250 ataagaaaaa-actaattaaa-tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||| ||||  |||||||||| |||||||  ||||  |||||| ||||| |||||||| |||||||||||||||||||||| ||||    
T  52632596 ataataaaagcactaattaaaatatatgtgacatataccaatactcatacaaactcaacggaaacttttataaaatgacatatttt 52632511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 359
Target Start/End: Complemental strand, 45629725 - 45629546
Alignment:
Q  177 atcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatg 275  Q
    |||| ||||||||||||||||   ||||||| | ||||| |||||||||||||||||     |||||||||| |||||||||| |||||||||||||||     
T  45629725 atcaatttttactcaaccgcatggtttggttcgatttgcagtttttattttaccaac-----caaaccacaatataagaaaaacactaattaaatatata 45629631  T
Q  276 tctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    || | |   |||||| ||||||||  |||| ||||||||| |||||||||||| |||||  | ||||||||||||||||||||||    
T  45629630 tcacttggaccaatactcatagaatttcaacggaaactttaataaaatgacatattttttattttgttaagtttcttctttgttt 45629546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 351
Target Start/End: Complemental strand, 26758769 - 26758591
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatata 273  Q
    |||| |||||||||||||  |||||||| ||||||||||||| ||||||||||||||| |||||||     ||| |||||||||| |||||| |||||||    
T  26758769 atttgttactcaaccgcatgatttggttcggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaaacactaataaaatata 26758670  T
Q  274 tgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttctt 351  Q
    | || | | | ||||||  ||||||||||||||| ||||||| || ||||||||| |||||  | ||||||||||||||    
T  26758669 tatcacttgaaccaatacccatagaaactcaatgaaaactttaatcaaatgacatattttttctcttgttaagtttctt 26758591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 333
Target Start/End: Complemental strand, 44651489 - 44651343
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaact-aattaaatatatgtctcataatcc 286  Q
    ||||||||||   ||||||||| |||| |||||| |||||||||||| || |||||| ||||||||||||||  | ||||||| |||| || | ||  ||    
T  44651489 ctcaaccgcatggtttggtttgatttgtggttttcattttaccaaccgaaccaaaccgcaacataagaaaaatgttaattaaacatatctcacttagacc 44651390  T
Q  287 aatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  44651389 aatactcatagaaattcaatggaaacttttataaaatgacatatttt 44651343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 4280863 - 4280783
Alignment:
Q  154 gtatttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc 234  Q
    ||||||| ||| ||| |||||| |||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||    
T  4280863 gtatttggtttggatgtattcagatcattttttactcaaccgcatggtttggttcggtttgcggtttttattttaccaacc 4280783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 333
Target Start/End: Original strand, 42362758 - 42362921
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttacc----------aaccaaatcaaaccacaacataaga-aaaaactaattaaa 269  Q
    |||||||||||||||||   ||||||||||||||||||||| ||||||||          ||||||| |||||| |||||||||| ||| | | ||||||    
T  42362758 ttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaactgaatcaaaccaaaccaaaccgcaacataagacaaatatttattaaa 42362857  T
Q  270 tatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
     |||| || | ||  |||||| || || ||||||||||||||||||||||||||||||||||||    
T  42362858 catatttcacctagaccaatactcttataaactcaatggaaacttttataaaatgacatttttt 42362921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 353
Target Start/End: Original strand, 55467241 - 55467365
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    ||||||| |||||| ||| |||||||||| ||||| ||||||||| || | | | |||||| |||||||||||||||| ||||||| ||||||||||||     
T  55467241 aaccaaaccaaacctcaatataagaaaaacactaactaaatatatatcacttgaaccaatactcatagaaactcaatgaaaactttaataaaatgacatg 55467340  T
Q  329 tttttgttgttgttaagtttcttct 353  Q
    |||||  | ||||||||||||||||    
T  55467341 ttttttcttttgttaagtttcttct 55467365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 333
Target Start/End: Complemental strand, 48169212 - 48169053
Alignment:
Q  180 attttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca-----caacataagaaaaa-actaattaaatata 273  Q
    |||||||||| |||| ||   ||||||| ||||||||||||| ||||||||||||||| |||||||     ||| |||||||||| |||||| |||||||    
T  48169212 attttttacttaaccacatggtttggttcggtttgcggttttcattttaccaaccaaaccaaaccaaacagcaatataagaaaaatactaataaaatata 48169113  T
Q  274 tgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    | || | ||  |||||| ||| ||||||| |||| ||||||| |||||||||||| ||||    
T  48169112 tatcacttagaccaatactcaaagaaacttaatgaaaactttaataaaatgacatatttt 48169053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 2832039 - 2832111
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacattttttgt-tgttgttaagtttcttctttg 356  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||| | | |||||||||||||||||||    
T  2832039 ccaatactcataaaaactcaatgtaaacttttataaaatgacattttttttctcttgttaagtttcttctttg 2832111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 343
Target Start/End: Original strand, 8557323 - 8557478
Alignment:
Q  188 ctcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatcc 286  Q
    ||||||||||   |||||||||||||| | |||| ||||||||||||||| |||||| ||||||||||||||   | |||||| |||| || | ||  ||    
T  8557323 ctcaaccgcatggtttggtttggtttgtgattttcattttaccaaccaaaccaaaccgcaacataagaaaaatgttgattaaacatatctcacctagacc 8557422  T
Q  287 aatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgtta 343  Q
    |||| | |||||||||||||||||||  |||||||||||  |||||| || ||||||    
T  8557423 aatactgatagaaactcaatggaaac-cttataaaatgatttttttttttcttgtta 8557478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 17144302 - 17144434
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaaa 300  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||| ||| |||| | |||||||| ||||||  | ||   ||||| | | | |||    
T  17144302 tttggtttggtttgcggtttttattttatcaaccaaaccaaactgcaacttaaaaaaacattaattaaacatatgttacctagatcaataataaaaaaaa 17144401  T
Q  301 ctcaatggaaacttttataaaatgacatttttt 333  Q
     |||||||||||||||||||||| |||| ||||    
T  17144402 ttcaatggaaacttttataaaataacatatttt 17144434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 54122827 - 54122703
Alignment:
Q  209 ggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaaa-ctaattaaatatatgtctc-ataatccaatattcatagaaactcaat 306  Q
    |||||| |||||| ||||||| ||||||| |||||| ||| ||||||||||  ||||||||||| ||||  | | |||  ||||||||||||||||||||    
T  54122827 ggtttgtggttttgattttactaaccaaaccaaaccgcaatataagaaaaacgctaattaaatacatgtacctagaat--aatattcatagaaactcaat 54122730  T
Q  307 ggaaacttttataaaatgacatttttt 333  Q
    ||||||||| |||| ||||||| ||||    
T  54122729 ggaaactttaataatatgacatatttt 54122703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 359
Target Start/End: Original strand, 45914757 - 45914932
Alignment:
Q  183 ttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcat 281  Q
    |||||||||||||||   ||||||||||||||||||||| ||||||| |||||||     || ||| |||||||||| ||||||||||||||| ||   |    
T  45914757 ttttactcaaccgcatggtttggtttggtttgcggttttgattttactaaccaaa-----ccgcaatataagaaaaatactaattaaatatatatcattt 45914851  T
Q  282 aatccaatattcatagaaactcaatggaaacttttataaaatgaca---ttttttgttgttgttaagtttcttctttgttt 359  Q
       |||||| ||| |||  ||||||| ||||||| |||||||||||   ||||||  | |||||||||||||| |||||||    
T  45914852 ggaccaatactcaaagaggctcaatgaaaactttaataaaatgacatattttttttctcttgttaagtttcttgtttgttt 45914932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 22255837 - 22256026
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc---------aaatcaaaccacaacataagaaaaa-actaattaaat 270  Q
    |||||||||||| |||| | ||||||| ||||||||||||| |||||| |||||         ||| |||||| | | |||||||||| |||||||||||    
T  22255837 ttttttactcaatcgcatagtttggttcggtttgcggttttgattttatcaaccgaccaaaccaaaccaaaccgcgatataagaaaaacactaattaaat 22255936  T
Q  271 atatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||| || | ||  |||||| ||||| ||| |||||||||||||| ||||||||  || |||||  | ||||||||||||||| ||||||    
T  22255937 atatatcacgtagaccaatactcatataaattcaatggaaactttaataaaatgttatattttttctcttgttaagtttcttcgttgttt 22256026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 4670086 - 4670028
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaaccacaacataagaaaaa 259  Q
    |||| |||| ||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  4670086 tttgttttgatttgcggtttttattttattaaccaaatcaaaccgcaacataagaaaaa 4670028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 8355812 - 8355682
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaactaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacattt 330  Q
    ||||||| |||||| ||| ||||| ||| ||||||||||||||  ||   ||  |||||| ||||||||| | |||| ||||||| ||||||||||||||    
T  8355812 aaccaaaccaaaccgcaatataagtaaacactaattaaatatacatcatctagaccaatactcatagaaatttaatgaaaactttaataaaatgacattt 8355713  T
Q  331 tttgt-tgtt-gttaagtttcttctttgttt 359  Q
    ||| | | || ||||||||||||||||||||    
T  8355712 tttttctcttagttaagtttcttctttgttt 8355682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 25918907 - 25918981
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttctttgttt 359  Q
    |||||| | |||||||||||||||||||||| |||||||||||  ||||  | ||||||||||| ||||||||||    
T  25918907 ccaatacttatagaaactcaatggaaactttaataaaatgacaaatttttatcttgttaagttttttctttgttt 25918981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 333
Target Start/End: Original strand, 50578555 - 50578700
Alignment:
Q  200 atttggtttggtttgcggtttttattttaccaa----------ccaaatcaaaccacaacataagaaaaaactaa-ttaaatatatgtctcataat-cca 287  Q
    |||||||||||||||||||||| ||||||||||          ||||| |||||| ||||||||||||||  | | |||||||||| || | |||  |||    
T  50578555 atttggtttggtttgcggttttcattttaccaattgaaccgaaccaaaccaaaccgcaacataagaaaaatgttagttaaatatatctcacctaagacca 50578654  T
Q  288 atattcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    ||| |||||||||||||||||||  |||||||||||||||| ||||    
T  50578655 atactcatagaaactcaatggaagtttttataaaatgacatatttt 50578700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 4280709 - 4280641
Alignment:
Q  292 tcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttgttt 359  Q
    |||||||||||||||| |||||| ||||||||||||| |||||  | ||||||||||| ||||||||||    
T  4280709 tcatagaaactcaatgaaaacttctataaaatgacatattttttctcttgttaagtttattctttgttt 4280641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 357
Target Start/End: Original strand, 22472663 - 22472791
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    |||||||  ||||| |||||||||||||| ||||||||| ||||| || | ||| | |||| |||||||||||||||| |||  | ||| |||||||||     
T  22472663 aaccaaactaaaccgcaacataagaaaaacactaattaactatatatcacctaaactaatactcatagaaactcaatgaaaatatctatcaaatgacata 22472762  T
Q  329 tttttgttgttgttaagtttcttctttgt 357  Q
    |||||  | |||||||||||||| |||||    
T  22472763 ttttttctcttgttaagtttcttatttgt 22472791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 37045795 - 37045692
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaact-aattaaatatatgtc-tcataatccaatattcatagaaactcaatggaaacttttataaaatgacat 328  Q
    ||||||| ||||||| |||||||||||||  | ||||||| ||||||| |||  | |||||| |||||||||||||||| |||||||||||||||| |||    
T  37045795 aaccaaaccaaaccataacataagaaaaatgttaattaaacatatgtcatcaaga-ccaatactcatagaaactcaatgaaaacttttataaaatgtcat 37045697  T
Q  329 ttttt 333  Q
     ||||    
T  37045696 atttt 37045692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 51660655 - 51660726
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    |||||| | |||||||||||||| |||||||||||||||||||| |||||  | ||| ||||||||||||||    
T  51660655 ccaatacttatagaaactcaatgaaaacttttataaaatgacatattttttctcttgataagtttcttcttt 51660726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 2565985 - 2566058
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgac--attttttgttgttgttaagtttcttctttg 356  Q
    |||||||| ||||||| |||||||||||||| || |||||||  |||||||  | |||||||||||||||||||    
T  2565985 ccaatatttatagaaattcaatggaaactttaatgaaatgacatatttttttcttttgttaagtttcttctttg 2566058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 51660562 - 51660604
Alignment:
Q  203 tggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    |||||||||||||||||||||||||||||||  ||||||||||    
T  51660562 tggtttggtttgcggtttttattttaccaactgaatcaaacca 51660604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 38651690 - 38651731
Alignment:
Q  292 tcatagaaactcaatggaaacttttataaaatgacatttttt 333  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  38651690 tcatagaaactcaatggaaacttttataaaattacatatttt 38651731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 51661911 - 51661964
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaacc 234  Q
    ||||||| |||||||||   |||||||||||||||||||||| |||||||||||    
T  51661911 ttttttattcaaccgcatggtttggtttggtttgcggtttttgttttaccaacc 51661964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 2565860 - 2565904
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||    
T  2565860 tttggttcggtttgcggttttgattttaccaaccaaaacaaacca 2565904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 10481218 - 10481341
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaaac-taattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    ||||||| |||||| ||||||||||||||   |||||||| ||||| | | ||   ||||| | ||||||||| |||||||| || ||||||| ||||||    
T  10481218 aaccaaaccaaaccgcaacataagaaaaactgtaattaaacatatgccacctagatcaatacttatagaaacttaatggaaatttgtataaaaagacatt 10481317  T
Q  330 ttttgttgttgttaagtttcttctt 354  Q
    ||||| | ||||||| |||||||||    
T  10481318 ttttg-tcttgttaaatttcttctt 10481341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 46253105 - 46253149
Alignment:
Q  285 ccaatattcatagaaactcaatggaaacttttataaaatgacatt 329  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||    
T  46253105 ccaatactcatagaaactcaatgaaaactttaataaaatgacatt 46253149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 4639242 - 4639195
Alignment:
Q  308 gaaacttttataaaatgacattttttgttgttgttaagtttcttcttt 355  Q
    |||| ||||||||||| ||||| |||||| ||||||||||||||||||    
T  4639242 gaaatttttataaaataacattatttgttcttgttaagtttcttcttt 4639195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 34185425 - 34185492
Alignment:
Q  171 attcaaatcatttttt-actcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaa 237  Q
    ||||| |||||||||| |||||||||||   || ||||||||||||  ||||||||||||||||||||    
T  34185425 attcagatcattttttgactcaaccgcatggttcggtttggtttgcactttttattttaccaaccaaa 34185492  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 5640238 - 5640320
Alignment:
Q  156 atttgatttagatatattcaaatcatttt-ttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaa 237  Q
    ||||||||  ||| || |||||||||||| |||||||||||||   ||| |||||||||| | |||| |||||||||||||||    
T  5640238 atttgattcggatgtaatcaaatcattttcttactcaaccgcatggtttagtttggtttgtgattttcattttaccaaccaaa 5640320  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 2831995 - 2831954
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2831995 tttggttttgtttgcggtttttattttacaaaccaaaccaaa 2831954  T

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Target: scaffold0001 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 428129 - 428004
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat- 328  Q
    |||||||||||| | |||||| ||||||| | |||||||| ||||||| ||||| |||||| ||||  |||||||||| ||||||||||||||||||||     
T  428129 aaccaaatcaaatctcaacatcagaaaaataataattaaacatatgtcacataaaccaatactcattaaaactcaatgaaaacttttataaaatgacata 428030  T
Q  329 tttttgttgttgttaagtttcttctt 354  Q
    |||||  | |||||||||||||||||    
T  428029 ttttttctcttgttaagtttcttctt 428004  T

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Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 405826 - 405859
Alignment:
Q  292 tcatagaaactcaatggaaacttttataaaatga 325  Q
    ||||||||| ||||||||||||||||||||||||    
T  405826 tcatagaaattcaatggaaacttttataaaatga 405859  T

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Target: scaffold0688 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 3255 - 3125
Alignment:
Q  231 aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatag-----aaactcaatggaaacttttataaaatg 324  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||| |    ||| |||||||||||||     |||||||||| ||||||||||||||||    
T  3255 aaccaaaccaaaccacaacataagaaaaacactaattaaacatatattgtctaaaccaatattcatagaaactaaactcaatgaaaacttttataaaatg 3156  T
Q  325 acattttttgttgttgttaagtttcttcttt 355  Q
    |||| ||||  | ||||||||||||||||||    
T  3155 acatatttttctcttgttaagtttcttcttt 3125  T

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Target: scaffold0688; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 1702 - 1531
Alignment:
Q  201 tttggtttggtttgcggtttttattttacc----------aaccaaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaat 289  Q
    ||||||||||||||||||||||||||||||          ||||||| ||||||||||||||||||||| |||||||||| ||||||    ||  |||||    
T  1702 tttggtttggtttgcggtttttattttaccaaccgaatcaaaccaaaccaaaccacaacataagaaaaacactaattaaacatatgttgtctagaccaat 1603  T
Q  290 attcatag-----aaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    ||||||||     |||||||||| |||||||||||||||||||| |||||  | |||||||||||| |||||    
T  1602 attcatagaaactaaactcaatgaaaacttttataaaatgacatattttttctcttgttaagtttcctcttt 1531  T

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Target: scaffold0688; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 4849 - 4792
Alignment:
Q  298 aaactcaatggaaacttttataaaatgacattttttgttgttgttaagtttcttcttt 355  Q
    |||||||||| |||||||||||||||||||| ||||  | ||||||||||||||||||    
T  4849 aaactcaatgaaaacttttataaaatgacatatttttctcttgttaagtttcttcttt 4792  T

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Target: scaffold0688; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 8158 - 8100
Alignment:
Q  298 aaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttcttt 355  Q
    |||||||||| |||||||||||||||||||| |||||  | |||||||||||| |||||    
T  8158 aaactcaatgaaaacttttataaaatgacatattttttctcttgttaagtttcctcttt 8100  T

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Target: scaffold0664 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 6461 - 6339
Alignment:
Q  235 aaatcaaaccacaacataagaaaaa-actaattaaatatatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttt 332  Q
    ||||||||||  ||||||||||||| |||||||||| ||||||| | ||| |||||| ||||||||||| |||| |||||| ||||| ||||||| ||||    
T  6461 aaatcaaaccgtaacataagaaaaacactaattaaacatatgtcacctaaaccaatactcatagaaacttaatgaaaacttctataacatgacatatttt 6362  T
Q  333 tgttgttgttaagtttcttcttt 355  Q
    |  | ||||||||||||||||||    
T  6361 ttctcttgttaagtttcttcttt 6339  T

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Target: scaffold0204 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 26404 - 26222
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca----------caacataagaaaaaactaattaaat 270  Q
    |||||| ||||||||||   ||||||||||||||||||||| |||||||||||| || |||||||          ||||||||||||||     |  |||    
T  26404 ttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacaaaaccgcaacataagaaaaat----tctaat 26309  T
Q  271 atatgtctcataatccaatattcatagaaactcaatggaaacttttataaaatgacat-tttttgttgttgttaagtttcttctttg 356  Q
     |||||| | ||  |||||| ||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||    
T  26308 ctatgtcacctagaccaatactcatagaaactcaatggaaacttttataaaatgacatattttttctattgttaagtttcttctttg 26222  T

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Target: scaffold0204; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 15088 - 14999
Alignment:
Q  156 atttgatttagatatattcaaatcattttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||| ||| ||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||||| |||||||||||| || |||||||    
T  15088 atttggtttggatgtattcagatcactttttactcaaccgcatagtttggtttggtctgcggttttcattttaccaaccgaaccaaacca 14999  T

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Target: scaffold0210 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 18958 - 18999
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||    
T  18958 tttggtttggtttgcggctttgattttaccaaccaaaccaaa 18999  T

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Target: scaffold0210; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 26850 - 26891
Alignment:
Q  201 tttggtttggtttgcggtttttattttaccaaccaaatcaaa 242  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||    
T  26850 tttggtttggtttgcggctttgattttaccaaccaaaccaaa 26891  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 62922 - 62858
Alignment:
Q  181 ttttttactcaaccgcacaatttggtttggtttgcggtttttattttaccaaccaaatcaaacca 245  Q
    ||||||||||||  |||  |||| ||||||||||||||||| |||||||||| | || |||||||    
T  62922 ttttttactcaatagcatgattttgtttggtttgcggttttgattttaccaatcgaaccaaacca 62858  T

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