View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1849-Insertion-4 (Length: 251)

Name: NF1849-Insertion-4
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1849-Insertion-4
NF1849-Insertion-4
[»] chr7 (15 HSPs)
chr7 (8-251)||(22840099-22840342)
chr7 (8-251)||(22898310-22898553)
chr7 (8-251)||(22875963-22876206)
chr7 (8-251)||(22809691-22809934)
chr7 (10-251)||(22831078-22831319)
chr7 (8-251)||(22889339-22889582)
chr7 (8-251)||(22893991-22894234)
chr7 (8-194)||(22805413-22805599)
chr7 (8-194)||(22815131-22815317)
chr7 (8-251)||(22913715-22913958)
chr7 (8-251)||(22885641-22885882)
chr7 (8-186)||(22842264-22842454)
chr7 (9-188)||(22880674-22880853)
chr7 (97-248)||(22858512-22858663)
chr7 (8-45)||(22858672-22858709)
[»] chr1 (1 HSPs)
chr1 (9-251)||(21150425-21150667)
[»] chr2 (1 HSPs)
chr2 (211-248)||(3741523-3741560)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22840342 - 22840099
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||  |||||||||||    
22840342 cttctttctcaactacttttgtattttccataaaatcttcatatccaactcttagtggccatggaattgttttcgttatttctcctacaaaagggctacc 22840243  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| || | ||||| |||||||||||||||||||||||| || | |||    
22840242 aaattcactaccaagtcaataccttggtctctttaaccaatccaacattggaaacggtggcaaccatgtttttggtgttgaacttgatactcttctaagt 22840143  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
22840142 agtgagtttgatgatatcaatgataaccatgttggtattgatat 22840099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22898553 - 22898310
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||||||||||||||| ||| |||||| | ||  | |||||||| || ||||||||||||||||||| ||| | |||||||  |||||||||||    
22898553 cttctttctcaactacttttgtgtttgccataagacctcaatatccaactcttagtggccatggaattgtttttgttgtctctcctacaaaagggctacc 22898454  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    ||||||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||    
22898453 aaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaaatagtagcaaccatgtttttggtgttgaacttgatactattattagt 22898354  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
22898353 agtgagtttaatgatatcaatgataaccatgttggtattgatat 22898310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22876206 - 22875963
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||||||||||||||||||| |||||| | ||  | |||||||| || ||||  ||||||||||||| ||| |||||||||  |||||||||||    
22876206 cttctttctcaactacttttgtatttgccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctacc 22876107  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    ||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||| ||||||||||||||||||||| || || | | |    
22876106 aaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgact 22876007  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
    | |||||||||||||||| |||||||||||||||||||||||||    
22876006 aatgagtttaatgatatcgatgataaccatgttggaattgatat 22875963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22809934 - 22809691
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||||||||||||||||||| |||||| | ||  | |||||||| || ||  |||||||||||| || ||| |||| ||||  |||||||| ||    
22809934 cttctttctcaactacttttgtatttgccataagacctcaatatccaactcttagttcccatggaattgtatttgttgtttcacctacaaaagggctgcc 22809835  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    |||||||  | || ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||| || | |||    
22809834 aaattcaaaagcaagtcaatatcttggtctctttaaccaatccaacaatggaaacagtagtaaccatgttttcggtgttgaactagatactcttctaagt 22809735  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||    
22809734 agtgagtttgatgatatcaatgataaccatattggtattgatat 22809691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 22831319 - 22831078
Alignment:
10 tctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctaccaa 109  Q
    |||||||||||||||||||||||| ||||||||||     ||||| || || ||||||||||||||||||| ||| |||||||||  |||||||||||||    
22831319 tctttctcaactacttttgtatttaccataaaatccatgtatccatctattagtggccatggaattgtttttgttctttctcctacaaaagggctaccaa 22831220  T
110 attcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagtag 209  Q
    |||||||||||  ||||||| |||||||||||||| | ||||||| |||||||||||| ||||| |||||||||||||| ||||| |||  ||  | |      
22831219 attcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtaaaaattt 22831120  T
210 tgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
22831119 tgagtttgatgatatcaatgataatcatgttggaattgatat 22831078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22889582 - 22889339
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||||||||||||| ||||| |||||| | ||  | || ||| | |||||||||||||||||||||| ||||||||||| |  |||||||||||    
22889582 cttctttctcaactacttttttatttgccataatacctcaatatgcaaatattggtggccatggaattgtttttgttatttctccaacaaaagggctacc 22889483  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    | ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||| ||||| |||||||||||||| ||||| |||  |   | |    
22889482 agattcactaccaagtcaataccttggtctctttaacgattccaacagtggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtcaaaat 22889383  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
      ||||||| |||||||||| |||||||||||||||||||||||    
22889382 tttgagtttgatgatatcaacgataaccatgttggaattgatat 22889339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22894234 - 22893991
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||| ||||||||||||||||||||| |||||| |  |  || |||||||| | ||||||||||||||||||| ||| |||||||||  |||||||||||    
22894234 cttcattctcaactacttttgtatttgccataagacatcaaggtccaacttatagtggccatggaattgtttttgttctttctcctacaaaagggctacc 22894135  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    ||||||||| | | ||  |||||||||||||||| || | ||||||||||||||   ||| |||||||||||||||||||||||||||||||||   | |    
22894134 aaattcactccaaggttcataccttggtctctttgacgattccaacaatggaaatcctagcaaccacgtttttggtgttgaacttgatactattgaaaat 22894035  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
     |||||||| ||||||||||||||||||||||||| ||||||||    
22894034 cgtgagtttgatgatatcaatgataaccatgttggtattgatat 22893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 22805599 - 22805413
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||||||||||||||||||| |||||| | ||  | ||||| |||||  |||||||||||||||||| ||| ||||||| |  |||||||||||    
22805599 cttctttctcaactacttttgtatttgccataatacctcaatatccaccttttactggccatggaattgtttttgttctttctccaacaaaagggctacc 22805500  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttga 194  Q
    |||||||||||||  |||||||||||||||||||||  | |||||||||||||||||| | ||||| ||||||||||||||||||||    
22805499 aaattcactaccaaatcaataccttggtctctttaatgattccaacaatggaaacagtggcaaccatgtttttggtgttgaacttga 22805413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 22815317 - 22815131
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||||||||||||||| ||| | |||| | ||  | ||||| ||||| ||||||| ||||||||||| ||| |||||||||  |||||||||||    
22815317 cttctttctcaactacttttgtgtttgcaataagacctcaatatccaccttttagtggccaaggaattgtttttgttctttctcctacaaaagggctacc 22815218  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttga 194  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||  ||||| |||||||||||||| |||||    
22815217 aaattcactaccaagtcaataccttggtctctttaacgattccaacaatggaaacagtaacaaccatgtttttggtgttgagcttga 22815131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22913958 - 22913715
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    |||||||||| ||||||||||| ||| |||||||||||     ||| | | || ||||||||||||||||||| ||| ||||||| |  |||||| ||||    
22913958 cttctttctctactacttttgtttttgccataaaatctgagtttcctaatcttagtggccatggaattgtttttgttctttctccaacaaaagggttacc 22913859  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    ||||||||||||| |||||||||||||||| || ||  | || |||||||||||||  | |||||| ||||||||| | || |||||||||||||| | |    
22913858 aaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat 22913759  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
    |  |||||  ||||||||||||| ||||||||||||||||||||    
22913758 acggagttcgatgatatcaatgacaaccatgttggaattgatat 22913715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 22885882 - 22885641
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacc 107  Q
    ||||||||||||||| || | ||||| | |||||||||| | ||||||||  | ||||||||||||||||||| |||||||| ||||  |||||||||||    
22885882 cttctttctcaactaattctttatttgctataaaatcttaatatccaactcatagtggccatggaattgtttttgttatttcacctacaaaagggctacc 22885783  T
108 aaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagt 207  Q
    ||||||||||| |  | ||||||||||||||  |||| | |||||||||||||||||||| | ||| ||||||||| |||| ||||| |||  |   | |    
22885782 aaattcactacaatattaataccttggtctc--taacaattccaacaatggaaacagtagcagccatgtttttggtattgagcttgacactgatcaaaat 22885685  T
208 agtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
      ||||||| |||| ||||||||||||||| |||| ||||||||    
22885684 tttgagtttgatgaaatcaatgataaccatattggtattgatat 22885641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 22842454 - 22842264
Alignment:
8 cttctttctcaactacttttgtattttccataaaatcttcagatcca------acttttggtggccatggaattgttttc--gtta----tttctcctag 95  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||      ||| || ||||||| || ||||||||   |||     |||| ||||     
22842454 cttctttctcaactacttttttatttgccataaaatctccagatccagaactaactcttagtggccacgggattgttttgttgtttcaactttcacctac 22842355  T
96 caaagggctaccaaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgtt 186  Q
     ||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||| ||||| ||||||||||||    
22842354 aaaagggcaaccaaattcactaccaggtcaataccttggtctctttaacaattccaacaatggaaatagtagcaaccatgtttttggtgtt 22842264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 22880853 - 22880674
Alignment:
9 ttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacca 108  Q
    ||||||||||||||||||||||||| |||| ||||||    || || ||  | ||||||||||| ||||||| ||| |||| || |  ||||||||||||    
22880853 ttctttctcaactacttttgtatttgccatcaaatctaggtatacagctacttgtggccatggacttgtttttgttgtttcaccaacaaaagggctacca 22880754  T
109 aattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttga 188  Q
    ||||| |||||| || ||||||||||||||||| ||   | ||||| |||||||| ||| ||||| ||||||| ||||||    
22880753 aattcgctaccaagtaaataccttggtctctttgacactttcaacactggaaacattagcaaccatgtttttgctgttga 22880674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 248
Target Start/End: Complemental strand, 22858663 - 22858512
Alignment:
97 aaagggctaccaaattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgata 196  Q
    |||||||||||| ||||||| |||   ||||||||||||| ||||||| | ||||||| |||||||| ||| ||||| || |||| |||||| ||||| |    
22858663 aaagggctaccagattcacttccaaaccaataccttggtccctttaacgattccaacattggaaacactagcaaccatgtgtttgctgttgagcttgaca 22858564  T
197 ctattattagtagtgagtttaatgatatcaatgataaccatgttggaattga 248  Q
    |||||     |  ||||||| ||||||||||| ||||||||| ||| |||||    
22858563 ctattcaagatcttgagtttgatgatatcaataataaccatgctggtattga 22858512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 22858709 - 22858672
Alignment:
8 cttctttctcaactacttttgtattttccataaaatct 45  Q
    |||||||||||||||||||| ||||| |||||||||||    
22858709 cttctttctcaactacttttttatttgccataaaatct 22858672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 21150425 - 21150667
Alignment:
9 ttctttctcaactacttttgtattttccataaaatcttcagatccaacttttggtggccatggaattgttttcgttatttctcctagcaaagggctacca 108  Q
    |||||| |||||||||||||||||| |||||| | ||  | |||||||| |||||||||||||||||||||| |||||||||||||  |||| |||||||    
21150425 ttctttttcaactacttttgtatttgccataagacctcaatatccaactcttggtggccatggaattgtttttgttatttctcctacaaaagagctacca 21150524  T
109 aattcactaccacgtcaataccttggtctctttaaccagtccaacaatggaaacagtagtaaccacgtttttggtgttgaacttgatactattattagta 208  Q
    ||||||||||||   ||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||||| ||||| ||| ||     |     
21150525 aattcactaccaacacaataccttggtctctttaacaattccaacaatggaaacagtagcaaccatgtttttggtgttgagcttgacactgttcaagatt 21150624  T
209 gtgagtttaatgatatcaatgataaccatgttggaattgatat 251  Q
     ||||||| ||||||||||| ||||||||||||| ||||||||    
21150625 ttgagtttgatgatatcaataataaccatgttggtattgatat 21150667  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 3741523 - 3741560
Alignment:
211 gagtttaatgatatcaatgataaccatgttggaattga 248  Q
    ||||||||||||||||||| ||||||||||||||||||    
3741523 gagtttaatgatatcaatgctaaccatgttggaattga 3741560  T

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