View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1849-Insertion-5 (Length: 350)
Name: NF1849-Insertion-5
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1849-Insertion-5 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 42451212 - 42451553
Alignment:
| Q |
8 |
gttgctacatgatttgttgttgcataaaagtacaaagcttgatttgctcaacattcatacacaatgaatacaataagtacaatgctgatttttattaata |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42451212 |
gttgctgcatgatttgttgttgcataaaagtacaaagcttgatttgctcaacattcatacacaatgaatacaataagtacaatgctgatttttattaata |
42451311 |
T |
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| Q |
108 |
tgtgtgaaaattgcaaaagtagctcattataagggacatatnnnnnnntaaataagggacatagatagtagcaggtctaagcagcacctaaaaagccggt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
42451312 |
tgtgtgaaaattgcaaaagtagctcattataagggacatataaaaaaataaataagggacatagatagttgcaggcctaagcagcacctaaaaagccggt |
42451411 |
T |
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| Q |
208 |
tgaaaggtggatggaatcttttccagtctagagactggcggattaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgt |
307 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
42451412 |
tgaaaagtggatggaatcttttccagtctagagactggcggattaccctcgaaagaaaggatacaaatccggttaggaaagacttgtaagaaatatatgt |
42451511 |
T |
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| Q |
308 |
gcttggttgttttgtctaccaaccctgaaagaattgtgactc |
349 |
Q |
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| T |
42451512 |
gcttggttgttttgtctaccaaccctgaaagaattgtgactc |
42451553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 221 - 349
Target Start/End: Original strand, 11677850 - 11677978
Alignment:
| Q |
221 |
gaatcttttccagtctagagactggcggattaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgtttt |
320 |
Q |
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| T |
11677850 |
gaatcttttccagtctagagactggtggattaccctcgaaagaaaggatacaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgtttt |
11677949 |
T |
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| Q |
321 |
gtctaccaaccctgaaagaattgtgactc |
349 |
Q |
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| T |
11677950 |
gtttaccaaccctgaaagaattgtgactc |
11677978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 7079 - 6951
Alignment:
| Q |
221 |
gaatcttttccagtctagagactggcggattaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgtttt |
320 |
Q |
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||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7079 |
gaatcttttcccgtctaaagaatggcggattaccctcgaaagaaaggatacaaattcgattaggaaagacttgtaagaaatgtatgtgtttggttgtttt |
6980 |
T |
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| Q |
321 |
gtctaccaaccctgaaagaattgtgactc |
349 |
Q |
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| T |
6979 |
gtttaccaaccctgaaagaattgtgactc |
6951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 34369082 - 34368982
Alignment:
| Q |
249 |
attaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgact |
348 |
Q |
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|||| ||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
34369082 |
attatccttgaaagaaatgatacaaatccacttaggaaagacttgtaagaaatgtatgtgcttcgttggtttgtttaccaaccctgaaagaattgtgact |
34368983 |
T |
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| Q |
349 |
c |
349 |
Q |
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| T |
34368982 |
c |
34368982 |
T |
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