View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18490_low_1 (Length: 783)
Name: NF18490_low_1
Description: NF18490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18490_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 723; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 9 - 767
Target Start/End: Complemental strand, 24105191 - 24104433
Alignment:
| Q |
9 |
agcacagacacggacgtgacactcttatatgtgaaaatttttaaaataaattaattgaatgtaatcacatatctcagtgtcatattagtcgcagacacat |
108 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24105191 |
agcacagacatggacgtgaaactcttatatgtgaaaattttaaaaataaattaattgaatgtaatcacatatctcagtgtcatattagtcgcagacacat |
24105092 |
T |
|
| Q |
109 |
gcgttgctagagagctatcaaccacaactactccaacaatttatcatcattttcaactccaacattcatatcataaaactctctcacattcttacacatt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24105091 |
gcgttgctagagagctatcaaccacaactactccaacaatttatcatcattttcaactccaacattcatatcataaaactctctcacattcttacacatt |
24104992 |
T |
|
| Q |
209 |
ttcaaacccttttcatccatttccctcaaaaccaacatagcctctttcaacttactcatccccataagcttcccacccaaacaaccaaaaagctcacaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24104991 |
ttcaaacccttttcatccatttccctcaaaaccaacatagcctctttcaacttactcatccccataagcttcccacccaaacaaccaaaaagctcacaat |
24104892 |
T |
|
| Q |
309 |
ccaaacccttatctttcccactaaaacacctcacataactcaaagcttgttcaaacaaatccctcttcaccaacgcttcgatcacaaacatatgcgtcga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24104891 |
ccaaacccttatctttcccactaaaacacctcacataactcaaagcttgttcaaacaaatccctcttcaccaacgcttcgatcacaaacatatgcgtcga |
24104792 |
T |
|
| Q |
409 |
atacaacatcggaactccatcatccaccatcctcctcaccaacaccatagctccaaccacattcctcttcctacacgcgcctaacacaagcgcgtcataa |
508 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24104791 |
atacaacatcggagctccatcatccaccatcctcctcaccaacaccatagctccaaccacattcctcttcctacacgcgcctaacacaagcgcgtcataa |
24104692 |
T |
|
| Q |
509 |
gttcgcgaatcaaaacaaaaaccctcctcccccatcgtcctcaaaaccctaaccgccgcttccacatcaccaacataacaataagtcataagaaaataat |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24104691 |
gttcgcgaatcaaaacaaaaaccctcctcctccatcgtcctcaaaaccgtaaccgccgcttccacatcaccaacataacaataagtcataagaaaataat |
24104592 |
T |
|
| Q |
609 |
tgtgtgccgttaaatctaacggcacaccaagttcagacattacctcgaccacgcgtttagcctggtcgagtgacttaactctagttaaaaaatttagtat |
708 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24104591 |
tgtgtgccgttaagtctaacggcacaccaagttcagacattacctcgaccacgcgtttagcctggtcgagtgacttaactctagttaaaaaacttagtat |
24104492 |
T |
|
| Q |
709 |
tggatgaaaagtacatgctttaagttcattatccgtgtcgtccacacgcgacatggatt |
767 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
24104491 |
tggatgaaaagtacatgctttaagttcattatccatgtcgtccacacgcgacatggatt |
24104433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24105775 - 24105739
Alignment:
| Q |
136 |
ctactccaacaatttatcatcattttcaactccaaca |
172 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
24105775 |
ctactccaacaatttatcatcattttcaactccaaca |
24105739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 38957381 - 38957343
Alignment:
| Q |
51 |
aaaataaattaattgaatgtaatcacatatctcagtgtc |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| |
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|
| T |
38957381 |
aaaataaattaattgaatgtaatcacatgtgtcagtgtc |
38957343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 10926670 - 10926633
Alignment:
| Q |
52 |
aaataaattaattgaatgtaatcacatatctcagtgtc |
89 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||| |
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| T |
10926670 |
aaatgaattaattaaatgtaatcacatatctcagtgtc |
10926633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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