View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_high_11 (Length: 501)
Name: NF18491_high_11
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 36730080 - 36729724
Alignment:
| Q |
17 |
catctaacctcctaccaggatgatcaaccaaccatggtcgaacaaaagaaagaaacaaactgcatggtgcattgttattgagtatttcaattatgttata |
116 |
Q |
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| T |
36730080 |
catctaacctcctatcaggatgatcagccaaccatggtcgaacaaaagaaagaaacaaactgcatggtgcattgttattgagtatttcaattatgttata |
36729981 |
T |
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| Q |
117 |
atatcttatggagtttttgggg-aacatatcatatggactttttcggggaagaatgaaacaggttattagtatctaattaagatatgttgcttgtacttg |
215 |
Q |
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| T |
36729980 |
atatcttatggagtttttgggggaacatatcatatggactttttcagggaagaatgaaacaggttattagtatct---taagatacgttgcttgtacttg |
36729884 |
T |
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| Q |
216 |
atataatctagttgcatctcgatttcaatcaaaaatgaattcaatcactgcaactcgattttggattcattcttataatattttaagatgtgttgtgtgt |
315 |
Q |
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| T |
36729883 |
atataatctaattgcatctcgatttcaattaaaaatgaattcaatcactgcaactcgattttagattcattcttataatattttaagatgtgttgtgtgt |
36729784 |
T |
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| Q |
316 |
atctattttaaattcagaatgaatcccaacattgatctcgattcattgcagcatgtaaat |
375 |
Q |
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| T |
36729783 |
atctattttagattcagaatgaatcccaacattaatctcgattcattgcagcatgtaaat |
36729724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 193 - 369
Target Start/End: Complemental strand, 36721086 - 36720910
Alignment:
| Q |
193 |
ttaagatatgttgcttgtacttgatataatctagttgcatctcgatttcaatcaaaaatgaattcaatcactgcaactcgattttggattcattcttata |
292 |
Q |
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| T |
36721086 |
ttaagatacgttgcttgtacttgatataatctagttgcatctcgattttaataaaaaatgaaatcaatcactgcatctcaattttggattcattcttata |
36720987 |
T |
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| Q |
293 |
atattttaagatgtgttgtgtgtatctattttaaattcaga-atgaatcccaacattgatctcgattcattgcagcat |
369 |
Q |
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| T |
36720986 |
ata-tctaagatgtgttgtgtgtatctattttggattcagagatgaatctcaacactgatctcgtttcattgcagcat |
36720910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 384 - 492
Target Start/End: Complemental strand, 36729687 - 36729580
Alignment:
| Q |
384 |
aatatactaggtcattaatcatgttgagatcgaatatggattcacaacttagnnnnnnnngcaatttacaatcatttagatttggttttgttgcttcaaa |
483 |
Q |
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| T |
36729687 |
aatatactaggtcattaatcatgctgagatcgaatatggattcacaacttagttttttg-gcaatttacaatcatttagatttggttttgttgcttcaaa |
36729589 |
T |
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| Q |
484 |
attttgatg |
492 |
Q |
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| T |
36729588 |
attttgatg |
36729580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 36721171 - 36721125
Alignment:
| Q |
82 |
ggtgcattgttattgagtatttcaattatgttataatatcttatgga |
128 |
Q |
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| T |
36721171 |
ggtgcattgttattgagtattgcaattatgttataatatcttatgga |
36721125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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