View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_high_24 (Length: 300)
Name: NF18491_high_24
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 12661468 - 12661742
Alignment:
| Q |
8 |
ttttgagtttggtcataaatgagtaaagctctttcattcaacctagttaatttgatgaagacttcaatgttattttattatattcctaataatttcataa |
107 |
Q |
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| T |
12661468 |
ttttgagtttggtcataaatgagtaaagctctttcattcaacctagttaatttgatgaggacttcaatgttattttat---attcctaataatttcataa |
12661564 |
T |
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| Q |
108 |
tgatctctagtgtgtagtatccactatccataggatagattatttacttttcagatcatgaatgttgtaaataagccgaccttgcttttcctttaatgct |
207 |
Q |
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| T |
12661565 |
tgatctctggtgtgtagtatccactatccataggatagattatttacttttcagatcatgaatgttgtaaataagccgatcttgcttttcctttaatgct |
12661664 |
T |
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| Q |
208 |
ttatcactcccaataaacttgtatgaaatagcctctatttattgggattatttaatcaatcgtactcgtatttgttaa |
285 |
Q |
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| T |
12661665 |
ttatcactcccaataaacttgtatgaaatagcctctatttattgggattatttaatcaatcgtactcgtatttgttaa |
12661742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 36 - 272
Target Start/End: Complemental strand, 33627448 - 33627214
Alignment:
| Q |
36 |
ctctttcattcaacctagttaatttgatgaagacttcaatgttattttattatattcctaataatttcat-aatgatctctagtgtgtagtatccactat |
134 |
Q |
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||||||||||| || ||||| ||||||||| |||||||||||| || ||| |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33627448 |
ctctttcattcgacttagttgatttgatgaggacttcaatgttgttgtat---attcctaataatttttttaatgatctctagtgtgtagtatccactat |
33627352 |
T |
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| Q |
135 |
ccataggatagattatttacttttcagatcatgaatgttgtaaataagccgaccttgcttttcctttaatgctttatcactcccaataaacttgtatgaa |
234 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33627351 |
ccataggatagattatttacttttcagatcatgaatgctgtaaataagccgaccttgcttttcctttaatactttatcactcccaataaacttgtatgaa |
33627252 |
T |
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| Q |
235 |
atagcctctatttattgggattatttaatcaatcgtac |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33627251 |
atagcctctatttattgggattatttaatcaatcgtac |
33627214 |
T |
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