View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18491_high_42 (Length: 241)
Name: NF18491_high_42
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_high_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 42513537 - 42513346
Alignment:
| Q |
12 |
aattcagattgtttagtttgtcatcattttgtttcaattatttaaattaaaatgtaaatgaaatgtggtgcaatatatttcaatctctctatgaagcata |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42513537 |
aattcagattatttagtttgtcatcattttgtttcaattatttaaattaaaatgtaaatgaaatgtggtgcaatatatttcaatctctctatgaagcata |
42513438 |
T |
|
| Q |
112 |
aaacacatgcaactcgtatatagtaatctgagagaattgaagttagtgaatgtaaccacatgcatcagtgtcatgttagttcgagatactat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42513437 |
aaacacatgcaactcgtatatagtaatctgagagaattgaagttagtgaatgtaaccacatgcatcagtgtcatgttagttcgagatactat |
42513346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University