View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18491_high_8 (Length: 515)

Name: NF18491_high_8
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18491_high_8
NF18491_high_8
[»] chr6 (2 HSPs)
chr6 (14-515)||(21005470-21005971)
chr6 (390-444)||(21005990-21006044)
[»] scaffold0014 (1 HSPs)
scaffold0014 (14-79)||(66796-66861)
[»] scaffold0557 (5 HSPs)
scaffold0557 (385-447)||(5969-6031)
scaffold0557 (385-444)||(5885-5944)
scaffold0557 (311-351)||(5969-6009)
scaffold0557 (385-447)||(5021-5083)
scaffold0557 (384-444)||(5107-5167)
[»] scaffold0442 (4 HSPs)
scaffold0442 (385-447)||(9363-9425)
scaffold0442 (385-444)||(9279-9338)
scaffold0442 (385-447)||(8386-8448)
scaffold0442 (311-351)||(9363-9403)
[»] scaffold0115 (3 HSPs)
scaffold0115 (311-351)||(46896-46936)
scaffold0115 (385-444)||(46961-47020)
scaffold0115 (407-447)||(46896-46936)
[»] chr1 (1 HSPs)
chr1 (385-488)||(41336427-41336527)


Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Original strand, 21005470 - 21005971
Alignment:
Q  14 cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagatta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005470 cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagatta 21005569  T
Q  114 caaaaccttcaaatctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005570 caaaaccttcaaatctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgtt 21005669  T
Q  214 gatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005670 gatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctca 21005769  T
Q  314 aatctatcctgcaagtgttcaacaggagaagaacaacaccgtcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatc 413  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005770 aatctaccctgcaagtgttcaacaggagaagaataacaccgtcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatc 21005869  T
Q  414 taccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttgatcaaccagagaagaacaacacgagtacta 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21005870 taccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttgatcaaccagagaagaacaacatgagtacta 21005969  T
Q  514 tg 515  Q
    ||    
T  21005970 tg 21005971  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 21005990 - 21006044
Alignment:
Q  390 aatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 444  Q
    |||||||||||||||| ||||||||| | || |||||||||||||||||||||||    
T  21005990 aatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaaca 21006044  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 66796 - 66861
Alignment:
Q  14 cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatg 79  Q
    ||||||||||||||||||| ||| |||||| |||| |||||||||| | |||||||||||||||||    
T  66796 cacagataacacaacaaattataaatcgtatttaatgtgaattcttccgatgaagttatccccatg 66861  T

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Target: scaffold0557 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 6031 - 5969
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 447  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  6031 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 5944 - 5885
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 444  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  5944 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaaca 5885  T

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Target: scaffold0557; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 6009 - 5969
Alignment:
Q  311 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 351  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  6009 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 5021 - 5083
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 447  Q
    |||| |||||||||||||| | |||||||||| ||| ||||||||||||  | ||||||||||    
T  5021 gtgttaatcaaaacatgcaccatcaaatctacaatgaaagtgttcaacatgagaagaacaaca 5083  T

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Target: scaffold0557; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 5107 - 5167
Alignment:
Q  384 agtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 444  Q
    ||||| ||| ||| |||| ||| ||||||||||| |  |||||||||||||||||||||||    
T  5107 agtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaaca 5167  T

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Target: scaffold0442 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 9425 - 9363
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 447  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  9425 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0442; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 9338 - 9279
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 444  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  9338 gtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaaca 9279  T

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Target: scaffold0442; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 8386 - 8448
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 447  Q
    |||| |||||||||||||| | |||||||||||||  ||||||||||||  | ||||||||||    
T  8386 gtgttaatcaaaacatgcaccatcaaatctaccataaaagtgttcaacatgagaagaacaaca 8448  T

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Target: scaffold0442; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 9403 - 9363
Alignment:
Q  311 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 351  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  9403 tcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  311 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 351  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

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Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 46961 - 47020
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 444  Q
    |||| ||||||| |||||| | ||||||||||| || ||||||||||||| |||||||||    
T  46961 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaaca 47020  T

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Target: scaffold0115; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  407 tcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 447  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 488
Target Start/End: Original strand, 41336427 - 41336527
Alignment:
Q  385 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttga 484  Q
    |||| ||||||| |||||| | ||||||||||  || |||||||||||| ||||||   |||||| ||| |||||| ||| |||||  |||||||||| |    
T  41336427 gtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaag---aacaccatcatgagtactatggttccaactcctggtgttaa 41336523  T
Q  485 tcaa 488  Q
    ||||    
T  41336524 tcaa 41336527  T

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