View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_10 (Length: 503)
Name: NF18491_low_10
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 201 - 490
Target Start/End: Complemental strand, 53830367 - 53830073
Alignment:
| Q |
201 |
cgctcattaacattacgaagtggatcaccaaagtttatacatgagggaaatgatggaagaaaacttattaaaagaaaatacagccaccaatgacaacaga |
300 |
Q |
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| T |
53830367 |
cgctcattaacattacgaagtggatcaccacagtttatacatgagggaaatgatggaagaaaacttattaaaagaaaatacagccaccaatgacaacaga |
53830268 |
T |
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| Q |
301 |
aacaaaaaagaccccttaaattaaaagatgaacgtcc----taatatatattttaagataagaaaataacgtcctaattatactaattaggctaagca-t |
395 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |
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| T |
53830267 |
aacaaaaaagaccccttaaattaaaagatgaacgtcctaattaatatatattttaagatcagaaaataacgtcctaattatactaattaggctaagtatt |
53830168 |
T |
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| Q |
396 |
ttacatatatgttgttattactggatataggactggccagtgatgtctatatcacgatccccagatgaaggaggaggattatgtttgggcttgat |
490 |
Q |
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| T |
53830167 |
ttacatatatgttgttattactggatataggactggccagtgatgtctatatcacgatccccagatgaaggaggaggattatgtttgggcttgat |
53830073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 53830495 - 53830367
Alignment:
| Q |
1 |
aaacactaattatttgatacacctttaacaaaataatcataattaaacattgaagttaggcaaaagtttaaattaccattcgattttcaaaccaaaataa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830495 |
aaacactaattatttgatacac-tttaacaaaataatcataattaaacattgaagttaggcaaaagtttaaattaccattcgattttcaaaccaaaataa |
53830397 |
T |
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| Q |
101 |
ataaattaccattccatttgatccttacac |
130 |
Q |
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| T |
53830396 |
ataaattaccattccatttgatccttacac |
53830367 |
T |
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