View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_12 (Length: 463)
Name: NF18491_low_12
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 23407891 - 23408093
Alignment:
| Q |
5 |
ccaagaacaaatttactagtttgaacaatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttccttctaagctcacc |
104 |
Q |
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| T |
23407891 |
ccaagaacaaatttactagtttgaacaatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttctttctaagctcacc |
23407990 |
T |
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| Q |
105 |
tctgaactttcatgtatatattttgtatcagatgtgtttgtgcttacagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaata |
204 |
Q |
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| T |
23407991 |
tctgaactttcatgtatatattttgtatcagatgtgtttgtgcttaaagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaata |
23408090 |
T |
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| Q |
205 |
ata |
207 |
Q |
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||| |
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| T |
23408091 |
ata |
23408093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 217 - 351
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
| Q |
217 |
gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23408192 |
gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag |
23408291 |
T |
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| Q |
317 |
taaaattgattaattataaacaatcacaatccaca |
351 |
Q |
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| T |
23408292 |
taaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 23408328 - 23408387
Alignment:
| Q |
386 |
aggaggaatccaactatattttatgagaaaatgtattcagtctttgatacccctagatca |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23408328 |
aggaggaatccaactatattttatgagaaaatgtattccgtctttgatacccctagatca |
23408387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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