View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18491_low_14 (Length: 438)
Name: NF18491_low_14
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Original strand, 52730490 - 52730897
Alignment:
| Q |
10 |
gcaaaggttggagatgtgttgtccaagccaagcaaatagaaaccctggttggctgtaatcctgtgtaatgcaaaatttatcttaactatagtaccgtatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52730490 |
gcaaaggttggagatgtgttgtccaagccaagcaaatagaaaccctggttggctgtaatcctgtgtaatgcaaaatttatcttaactatattaccgtatt |
52730589 |
T |
|
| Q |
110 |
aaatatgtacttaattaatagcttcatgactagggttctcaattctttcttttaatataacaaaacaatactcatactaatatttctggtttcaaattgc |
209 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
52730590 |
aattatgtacttaattaatagcttcattactagggttctcaattctttcttttaatatactaa-----tactaatactaatatttctggtttcaaattgc |
52730684 |
T |
|
| Q |
210 |
ggtttgcaacttaatataaacgattttgaggacttagcaatgacattgcaaccacaatataaattttgattatatccgccacattttctaacaatataat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52730685 |
ggtttgcaacttaatataaacgattttgaggacttagcaatgacatcgcaaccacaatataaattttgattatatctgccacattttctaacaatataat |
52730784 |
T |
|
| Q |
310 |
agtttcacggtataaccacaaacacaatttaaaaccatgatttccatcgatttttcttcttattttactttaaattaactaactaatgatttgtaggtta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52730785 |
agtttcacggtataaccacaaacacaatttaaaaccatgatttccatcgatttttcttcttattttactttaaattaactaactaatgatttgtaggtta |
52730884 |
T |
|
| Q |
410 |
tgagtgggaaaag |
422 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52730885 |
tgagtgggaaaag |
52730897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 7369344 - 7369407
Alignment:
| Q |
10 |
gcaaaggttggagatgtgttgtccaagccaagcaaatagaaaccctggttggctgtaatcctgt |
73 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||| |||||||| || || ||||||||||||| |
|
|
| T |
7369344 |
gcaaaggtaggggatgtgttatccaacccaagcaagtagaaaccttgatttgctgtaatcctgt |
7369407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University